UHGV-0137897

Genome information

Genome length 31,866 bps

CDS count 45

Completeness 79.78% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137897
vOTU ID	vOTU-030138
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_387576
BioSample	SAMN04261229
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.85
Jumbo phage	No

Genome content
Genome length	31,866 bps
GC content	49.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	95.10%
Average CDS length	678.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137897_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0137897_1	PHROG	phrog_291	endolysin	lysis
UHGV-0137897_1	eggNOG-mapper	1280706.AUJE01000010_gene684	Glycosyl hydrolase family 25	NA
UHGV-0137897_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0137897_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0137897_2	PHROG	phrog_199	holin	lysis
UHGV-0137897_2	UniRef90	UniRef90_R6AE25	Conserved domain protein	NA
UHGV-0137897_2	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-0137897_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0137897_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0137897_4	PHROG	phrog_33356	NA	unknown function
UHGV-0137897_4	eggNOG-mapper	1232428.CAVO010000021_gene791	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0137897_4	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0137897_5	PHROG	phrog_6061	NA	unknown function
UHGV-0137897_6	PHROG	phrog_2427	NA	unknown function
UHGV-0137897_6	eggNOG-mapper	910314.HMPREF9220_1082	NA	NA
UHGV-0137897_7	PHROG	phrog_1101	tail protein	tail
UHGV-0137897_7	UniRef90	UniRef90_R6AN79	Conserved domain protein	NA
UHGV-0137897_7	eggNOG-mapper	592028.GCWU000321_01390	Putative phage tail protein	NA
UHGV-0137897_7	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0137897_7	COG	COG1511	NA	NA
UHGV-0137897_7	Structural annotation	PF13550, PF16323, NF040662, NF010681, COG4733	NA	NA
UHGV-0137897_8	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0137897_8	PHROG	phrog_329	minor tail protein	tail
UHGV-0137897_8	UniRef90	UniRef90_R6BA09	Cell wall-associated hydrolase	NA
UHGV-0137897_8	eggNOG-mapper	592028.GCWU000321_01389	NlpC/P60 family	NA
UHGV-0137897_8	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0137897_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0137897_8	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0137897_9	PHROG	phrog_778	tail assembly protein	tail
UHGV-0137897_9	UniRef90	UniRef90_R6AUE0	Conserved domain protein	NA
UHGV-0137897_9	eggNOG-mapper	592028.GCWU000321_01388	NA	NA
UHGV-0137897_9	Pfam	PF09931	NA	DUF2163
UHGV-0137897_9	COG	COG5449	NA	NA
UHGV-0137897_9	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0137897_10	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0137897_10	UniRef90	UniRef90_UPI000C7C1E73	NA	NA
UHGV-0137897_10	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0137897_10	Pfam	PF09343	NA	DUF2460
UHGV-0137897_10	COG	COG5448	NA	NA
UHGV-0137897_10	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0137897_11	PHROG	phrog_12798	NA	unknown function
UHGV-0137897_11	UniRef90	UniRef90_R6AN74	Tape measure domain protein	NA
UHGV-0137897_11	eggNOG-mapper	2754.EH55_13250	tape measure	NA
UHGV-0137897_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0137897_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0137897_11	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0137897_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0137897_12	eggNOG-mapper	1123288.SOV_2c03530	NA	NA
UHGV-0137897_13	eggNOG-mapper	1111454.HMPREF1250_1052	NA	NA
UHGV-0137897_13	Structural annotation	PF19591	NA	NA
UHGV-0137897_14	PHROG	phrog_1407	major tail protein	tail
UHGV-0137897_14	UniRef90	UniRef90_R6AUD7	Phage major tail protein TP901-1 family	NA
UHGV-0137897_14	eggNOG-mapper	568816.Acin_1911	Phage tail tube protein	NA
UHGV-0137897_14	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0137897_14	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0137897_14	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0137897_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0137897_15	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0137897_15	eggNOG-mapper	1280706.AUJE01000003_gene2256	NA	NA
UHGV-0137897_15	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0137897_16	eggNOG-mapper	1000569.HMPREF1040_0193	NA	NA
UHGV-0137897_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0137897_17	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0137897_17	eggNOG-mapper	1232428.CAVO010000021_gene802	NA	NA
UHGV-0137897_17	Structural annotation	TIGR01725	NA	NA
UHGV-0137897_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0137897_18	UniRef90	UniRef90_R6B9Z9	Gp7	NA
UHGV-0137897_18	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-0137897_18	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0137897_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0137897_19	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0137897_19	Structural annotation	PF06810	NA	NA
UHGV-0137897_20	Structural annotation	PF15597	NA	NA
UHGV-0137897_21	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0137897_21	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0137897_21	eggNOG-mapper	1280706.AUJE01000003_gene2262	NA	NA
UHGV-0137897_21	Pfam	PF14021	Tuberculosis necrotizing toxin	TNT
UHGV-0137897_21	Structural annotation	PF14021	NA	NA
UHGV-0137897_22	PHROG	phrog_145	portal protein	head and packaging
UHGV-0137897_22	UniRef90	UniRef90_R6B9Z5	Conserved domain protein	NA
UHGV-0137897_22	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0137897_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0137897_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0137897_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0137897_23	UniRef90	UniRef90_R6AUD0	Phage terminase large subunit	NA
UHGV-0137897_23	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0137897_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0137897_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0137897_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0137897_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0137897_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0137897_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0137897_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0137897_24	UniRef90	UniRef90_R6AGU2	Phage terminase small subunit	NA
UHGV-0137897_24	eggNOG-mapper	1321779.HMPREF1984_01312	terminase small subunit	NA
UHGV-0137897_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0137897_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0137897_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0137897_25	PHROG	phrog_3243	NA	unknown function
UHGV-0137897_25	eggNOG-mapper	568816.Acin_1295	NA	NA
UHGV-0137897_25	Structural annotation	PF17185, MF_00075, NF007814, COG0361	NA	NA
UHGV-0137897_26	eggNOG-mapper	936572.HMPREF1148_0670	NA	NA
UHGV-0137897_26	Structural annotation	PF08281, TIGR01636, COG2739	NA	NA
UHGV-0137897_27	UniRef90	UniRef90_A0A3B9DVA1	MYND-type domain-containing protein	NA
UHGV-0137897_28	PHROG	phrog_16126	NA	unknown function
UHGV-0137897_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0137897_29	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0137897_29	UniRef90	UniRef90_R6AUC5	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0137897_29	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0137897_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0137897_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0137897_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0137897_32	Structural annotation	PF05406	NA	NA
UHGV-0137897_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0137897_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0137897_33	UniRef90	UniRef90_A0A8D5A5X5	Single-stranded DNA-binding protein	NA
UHGV-0137897_33	eggNOG-mapper	1296662.S5MUT4_9CAUD	Single-strand binding protein family	NA
UHGV-0137897_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0137897_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0137897_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0137897_33	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0137897_34	PHROG	phrog_9804	NA	unknown function
UHGV-0137897_34	UniRef90	UniRef90_A0A0R3JUV7	Loader and inhibitor of phage G40P	NA
UHGV-0137897_34	eggNOG-mapper	1273103.NM10_01154	NA	NA
UHGV-0137897_34	Structural annotation	PF11417	NA	NA
UHGV-0137897_35	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0137897_35	UniRef90	UniRef90_UPI000C99E04B	conserved phage C-terminal domain-containing protein	NA
UHGV-0137897_35	eggNOG-mapper	1423807.BACO01000050_gene1452	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0137897_35	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0137897_35	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0137897_36	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0137897_36	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0137897_36	UniRef90	UniRef90_S7HTJ9	RecT protein	NA
UHGV-0137897_36	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-0137897_36	Pfam	PF03837	RecT family	RecT
UHGV-0137897_36	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0137897_36	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0137897_36	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0137897_37	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137897_37	UniRef90	UniRef90_S7HTF0	Phage-type endonuclease	NA
UHGV-0137897_37	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-0137897_37	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0137897_37	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0137897_37	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0137897_37	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0137897_38	Structural annotation	PF17600	NA	NA
UHGV-0137897_39	PHROG	phrog_31911	NA	unknown function
UHGV-0137897_39	UniRef90	UniRef90_A0A1C5SJ26	MYND finger	NA
UHGV-0137897_39	eggNOG-mapper	1122217.KB899585_gene226	NA	NA
UHGV-0137897_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0137897_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0137897_44	UniRef90	UniRef90_G4Q2G9	Bro-N domain-containing protein	NA
UHGV-0137897_44	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-0137897_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0137897_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0137897_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0137897_44	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0137897_45	UniRef90	UniRef90_A0A7X2T9I7	NA	NA