UHGV-0137958

Genome information

Genome length 36,222 bps

CDS count 44

Completeness 86.27% (medium-quality)

geNomad score 0.9060

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137958
vOTU ID	vOTU-021756
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_379911
BioSample	SAMN04168656
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9060
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.85
Jumbo phage	No

Genome content
Genome length	36,222 bps
GC content	52.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	89.09%
Average CDS length	735.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137958_1	UniRef90	UniRef90_UPI0013EA6218	RteC domain-containing protein	NA
UHGV-0137958_1	eggNOG-mapper	1501391.LG35_05580	RteC protein	NA
UHGV-0137958_1	Pfam	PF09357	RteC protein	RteC
UHGV-0137958_1	Structural annotation	PF09357	NA	NA
UHGV-0137958_3	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0137958_3	eggNOG-mapper	1273103.NM10_01164	DnaD domain protein	NA
UHGV-0137958_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0137958_3	Structural annotation	PF01978, MF_01819, NF041230, COG3355	NA	NA
UHGV-0137958_4	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0137958_4	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0137958_4	UniRef90	UniRef90_UPI001B37FC83	ATP-binding protein	NA
UHGV-0137958_4	eggNOG-mapper	1158294.JOMI01000001_gene1619	NA	NA
UHGV-0137958_4	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0137958_6	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0137958_6	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137958_6	UniRef90	UniRef90_UPI0013EB3847	HNH endonuclease	NA
UHGV-0137958_6	eggNOG-mapper	398512.JQKC01000005_gene5427	HNH endonuclease	NA
UHGV-0137958_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0137958_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0137958_7	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0137958_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0137958_7	UniRef90	UniRef90_UPI0013ED82B6	tyrosine-type recombinase/integrase	NA
UHGV-0137958_7	eggNOG-mapper	1433126.BN938_0085	Belongs to the 'phage' integrase family	NA
UHGV-0137958_7	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0137958_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0137958_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0137958_7	Structural annotation	PF00589, PF02899, MF_01807, NF001399, COG4974	NA	NA
UHGV-0137958_8	PHROG	phrog_11900	NA	unknown function
UHGV-0137958_8	UniRef90	UniRef90_UPI00195A1DDB	Fic family protein	NA
UHGV-0137958_8	eggNOG-mapper	1235803.C825_01806	Fic/DOC family	NA
UHGV-0137958_8	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0137958_8	COG	COG3177	Fic family protein	NA
UHGV-0137958_8	Structural annotation	PF02661, PF12728, TIGR02613, TIGR01764, COG3177, COG3311	NA	NA
UHGV-0137958_9	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0137958_9	UniRef90	UniRef90_UPI001EDFAC6C	phage terminase small subunit P27 family	NA
UHGV-0137958_9	eggNOG-mapper	1433126.BN938_0084	Phage terminase, small subunit	NA
UHGV-0137958_9	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0137958_9	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0137958_9	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0137958_9	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0137958_10	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0137958_10	UniRef90	UniRef90_UPI0018A05C8D	terminase large subunit	NA
UHGV-0137958_10	eggNOG-mapper	2754.EH55_13175	Terminase	NA
UHGV-0137958_10	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0137958_10	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0137958_10	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0137958_10	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0137958_12	PHROG	phrog_9592	NA	unknown function
UHGV-0137958_12	UniRef90	UniRef90_UPI001F312253	ParB/Srx family N-terminal domain-containing protein	NA
UHGV-0137958_12	eggNOG-mapper	553218.CAMRE0001_1256	chromosome segregation	NA
UHGV-0137958_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0137958_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0137958_12	Structural annotation	MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0137958_13	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0137958_13	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0137958_13	UniRef90	UniRef90_UPI00037BCD11	DNA adenine methylase	NA
UHGV-0137958_13	eggNOG-mapper	1123058.KB894236_gene750	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0137958_13	PADLOC	MTase_II_00144	Type II methyltransferase	RM
UHGV-0137958_13	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0137958_13	COG	COG0338	DNA-adenine methylase	NA
UHGV-0137958_13	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0137958_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0137958_14	UniRef90	UniRef90_UPI001EDCC252	phage portal protein	NA
UHGV-0137958_14	eggNOG-mapper	1408303.JNJJ01000024_gene3009	portal protein	NA
UHGV-0137958_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0137958_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0137958_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0137958_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0137958_15	KOfam	K06904	NA	NA
UHGV-0137958_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0137958_15	UniRef90	UniRef90_UPI00101D63F6	HK97 family phage prohead protease	NA
UHGV-0137958_15	eggNOG-mapper	443152.MDG893_20619	Caudovirus prohead serine protease	NA
UHGV-0137958_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0137958_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0137958_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0137958_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0137958_16	PHROG	phrog_14722	NA	unknown function
UHGV-0137958_16	UniRef90	UniRef90_UPI001CA7BFDA	MjaI family restriction endonuclease	NA
UHGV-0137958_16	eggNOG-mapper	714943.Mucpa_0862	MjaI restriction endonuclease	NA
UHGV-0137958_16	PADLOC	REase_II_00121	Type II restriction enzyme	RM
UHGV-0137958_16	Pfam	PF09568	MjaI restriction endonuclease	RE_MjaI
UHGV-0137958_17	KOfam	K24451	zim; modification methylase	NA
UHGV-0137958_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0137958_17	UniRef90	UniRef90_UPI0006A6653B	site-specific DNA-methyltransferase	NA
UHGV-0137958_17	eggNOG-mapper	714943.Mucpa_0861	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0137958_17	PADLOC	MTase_II_00069	Type II methyltransferase	RM
UHGV-0137958_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0137958_17	COG	COG0863	DNA modification methylase	NA
UHGV-0137958_17	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0137958_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0137958_18	UniRef90	UniRef90_UPI0013E9AE26	phage major capsid protein	NA
UHGV-0137958_18	eggNOG-mapper	1433126.BN938_0523	Phage capsid family	NA
UHGV-0137958_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0137958_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0137958_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0137958_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0137958_19	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0137958_19	UniRef90	UniRef90_UPI00189F93C6	phage gp6-like head-tail connector protein	NA
UHGV-0137958_19	eggNOG-mapper	391896.A1I_06260	Phage gp6-like head-tail connector protein	NA
UHGV-0137958_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0137958_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0137958_19	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0137958_20	UniRef90	UniRef90_UPI00189E23FD	phage head closure protein	NA
UHGV-0137958_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0137958_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0137958_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0137958_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0137958_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0137958_21	UniRef90	UniRef90_UPI001B3652B9	HK97 gp10 family phage protein	NA
UHGV-0137958_21	eggNOG-mapper	1433126.BN938_0520	NA	NA
UHGV-0137958_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0137958_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0137958_21	Structural annotation	PF06763, TIGR01725	NA	NA
UHGV-0137958_22	Structural annotation	PF11367	NA	NA
UHGV-0137958_23	PHROG	phrog_1407	major tail protein	tail
UHGV-0137958_23	UniRef90	UniRef90_UPI00101DFFCB	phage tail tube protein	NA
UHGV-0137958_23	eggNOG-mapper	1236517.BAKO01000013_gene1445	Phage tail tube protein	NA
UHGV-0137958_23	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0137958_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0137958_24	Structural annotation	PF11836	NA	NA
UHGV-0137958_27	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0137958_27	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0137958_27	UniRef90	UniRef90_UPI001E56E7CE	DNA adenine methylase	NA
UHGV-0137958_27	eggNOG-mapper	1433126.BN938_0136	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0137958_27	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0137958_27	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0137958_27	COG	COG0338	DNA-adenine methylase	NA
UHGV-0137958_27	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0137958_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0137958_28	UniRef90	UniRef90_UPI00101BBD21	phosphoadenosine phosphosulfate reductase	NA
UHGV-0137958_28	eggNOG-mapper	1378168.N510_01911	NA	NA
UHGV-0137958_28	PADLOC	SspD_00001	SspD	SSP
UHGV-0137958_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0137958_28	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-0137958_29	Structural annotation	PF15513, COG5353	NA	NA
UHGV-0137958_31	PHROG	phrog_1987	NA	unknown function
UHGV-0137958_33	UniRef90	UniRef90_UPI001EDD5E2B	NA	NA
UHGV-0137958_33	Pfam	PF14192	NA	DUF4314
UHGV-0137958_33	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0137958_33	Structural annotation	PF14192, NF007106	NA	NA
UHGV-0137958_35	KOfam	K18369	adh2; alcohol dehydrogenase [EC:1.1.1.-]	NA
UHGV-0137958_35	PHROG	phrog_2640	zinc containing alcohol dehydrogenase superfamily	other
UHGV-0137958_35	UniRef90	UniRef90_UPI00101BD1BB	alcohol dehydrogenase	NA
UHGV-0137958_35	eggNOG-mapper	449673.BACSTE_00208	NA	NA
UHGV-0137958_35	Pfam	PF08240	Alcohol dehydrogenase GroES-like domain	ADH_N
UHGV-0137958_35	Pfam	PF00107	Zinc-binding dehydrogenase	ADH_zinc_N
UHGV-0137958_35	COG	COG1063	Threonine dehydrogenase or related Zn-dependent dehydrogenase	NA
UHGV-0137958_35	Structural annotation	PF08240, PF16912, MF_00627, NF007489, COG1063	NA	NA
UHGV-0137958_37	PHROG	phrog_9915	NA	unknown function
UHGV-0137958_37	UniRef90	UniRef90_UPI00101CDCED	BspA family leucine-rich repeat surface protein	NA
UHGV-0137958_37	Pfam	PF03382	NA	DUF285
UHGV-0137958_37	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0137958_37	Structural annotation	PF03382	NA	NA
UHGV-0137958_39	PHROG	phrog_38044	NA	unknown function
UHGV-0137958_39	eggNOG-mapper	742727.HMPREF9447_04846	Phage minor structural protein	NA
UHGV-0137958_39	COG	COG4926	Phage-related protein	NA
UHGV-0137958_41	PHROG	phrog_27166	tail length tape measure protein	tail
UHGV-0137958_41	UniRef90	UniRef90_UPI000C15DCE7	phage tail length tape measure family protein	NA
UHGV-0137958_41	eggNOG-mapper	1433126.BN938_0515	domain protein	NA
UHGV-0137958_41	COG	COG5283	Phage-related tail protein	NA
UHGV-0137958_41	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-0137958_42	PHROG	phrog_873	endolysin	head and packaging
UHGV-0137958_42	UniRef90	UniRef90_UPI00189C60BB	structural protein P5	NA
UHGV-0137958_42	eggNOG-mapper	1433126.BN938_0138	NA	NA
UHGV-0137958_44	PHROG	phrog_30639	NA	unknown function
UHGV-0137958_44	eggNOG-mapper	1433126.BN938_0140	NA	NA
UHGV-0137958_44	Structural annotation	PF18975, PF10916, MF_01282, NF000022, COG4257, COG4379	NA	NA