UHGV-0138012

Genome information

Genome length 33,066 bps

CDS count 54

Completeness 85.33% (medium-quality)

geNomad score 0.9564

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138012
vOTU ID	vOTU-027151
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370332
BioSample	SAMN03279760
Country	Singapore
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9564
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.66
Jumbo phage	No

Genome content
Genome length	33,066 bps
GC content	69.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	94.33%
Average CDS length	580.33 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138012_1	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0138012_1	COG	COG2369	NA	NA
UHGV-0138012_2	Structural annotation	PF21279, NF040942	NA	NA
UHGV-0138012_3	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0138012_4	eggNOG-mapper	1504822.CCNO01000013_gene318	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0138012_5	KOfam	K14059	int; integrase	NA
UHGV-0138012_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0138012_5	UniRef90	UniRef90_A0A1Y4DUY6	Tyr recombinase domain-containing protein	NA
UHGV-0138012_5	eggNOG-mapper	1504822.CCNO01000013_gene317	DNA integration	NA
UHGV-0138012_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0138012_5	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0138012_7	eggNOG-mapper	1504822.CCNO01000015_gene585	Belongs to the 'phage' integrase family	NA
UHGV-0138012_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0138012_9	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0138012_9	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0138012_9	UniRef90	UniRef90_UPI0003FADD15	XRE family transcriptional regulator	NA
UHGV-0138012_9	eggNOG-mapper	1504822.CCNO01000013_gene315	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0138012_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138012_9	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0138012_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0138012_9	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0138012_10	eggNOG-mapper	1504822.CCNO01000015_gene588	sequence-specific DNA binding	NA
UHGV-0138012_10	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0138012_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0138012_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0138012_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0138012_12	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0138012_12	UniRef90	UniRef90_B6GAL4	Phage antirepressor protein	NA
UHGV-0138012_12	eggNOG-mapper	445975.COLSTE_01114	BRO family, N-terminal domain	NA
UHGV-0138012_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0138012_12	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0138012_12	COG	COG3617	Prophage antirepressor	NA
UHGV-0138012_12	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0138012_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0138012_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0138012_17	UniRef90	UniRef90_UPI0009323E96	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0138012_17	eggNOG-mapper	1504822.CCNO01000013_gene309	crossover junction endodeoxyribonuclease activity	NA
UHGV-0138012_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0138012_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0138012_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0138012_18	PHROG	phrog_34396	NA	unknown function
UHGV-0138012_18	UniRef90	UniRef90_UPI0009856E29	NA	NA
UHGV-0138012_18	Pfam	PF07083	NA	DUF1351
UHGV-0138012_18	Structural annotation	PF07083	NA	NA
UHGV-0138012_19	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0138012_19	UniRef90	UniRef90_UPI00123B0CBF	recombinase RecT	NA
UHGV-0138012_19	eggNOG-mapper	1504822.CCNO01000013_gene307	NA	NA
UHGV-0138012_19	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0138012_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0138012_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0138012_20	UniRef90	UniRef90_Z4WX95	Single-stranded DNA-binding protein	NA
UHGV-0138012_20	eggNOG-mapper	1504822.CCNO01000013_gene306	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0138012_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0138012_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0138012_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0138012_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0138012_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0138012_25	Structural annotation	PF18337, TIGR03318	NA	NA
UHGV-0138012_32	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0138012_32	UniRef90	UniRef90_UPI0014922982	transposase	NA
UHGV-0138012_32	eggNOG-mapper	1504822.CCNO01000013_gene289	transposase activity	NA
UHGV-0138012_32	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0138012_32	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0138012_32	Structural annotation	PF07141	NA	NA
UHGV-0138012_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0138012_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0138012_33	UniRef90	UniRef90_N2BLR4	PBSX family phage terminase, large subunit	NA
UHGV-0138012_33	eggNOG-mapper	1504822.CCNO01000013_gene288	DNA packaging	NA
UHGV-0138012_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0138012_33	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0138012_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0138012_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0138012_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0138012_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0138012_34	UniRef90	UniRef90_A0A174A8R0	Phage portal protein, SPP1 family	NA
UHGV-0138012_34	eggNOG-mapper	411468.CLOSCI_00292	Phage portal protein, SPP1 family	NA
UHGV-0138012_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0138012_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0138012_35	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0138012_35	UniRef90	UniRef90_A0A425W9E6	Phage_Mu_F domain-containing protein	NA
UHGV-0138012_35	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0138012_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0138012_35	COG	COG2369	NA	NA
UHGV-0138012_35	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0138012_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0138012_37	UniRef90	UniRef90_A0A6A8M6L6	HK97 gp10 family phage protein	NA
UHGV-0138012_37	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0138012_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0138012_37	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0138012_37	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0138012_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0138012_38	UniRef90	UniRef90_A0A174AAF6	Clp R domain-containing protein	NA
UHGV-0138012_38	Structural annotation	PF06810	NA	NA
UHGV-0138012_39	PHROG	phrog_283	major head protein	head and packaging
UHGV-0138012_39	UniRef90	UniRef90_A0A174ACN4	p22 coat protein-gene protein 5	NA
UHGV-0138012_39	eggNOG-mapper	1504822.CCNO01000013_gene282	P22 coat protein - gene protein 5	NA
UHGV-0138012_39	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0138012_39	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0138012_41	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0138012_42	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0138012_42	Structural annotation	PF11367	NA	NA
UHGV-0138012_43	PHROG	phrog_885	major tail protein	tail
UHGV-0138012_43	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0138012_43	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0138012_43	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0138012_45	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0138012_45	eggNOG-mapper	1504822.CCNO01000015_gene1083	phage tail tape measure protein	NA
UHGV-0138012_45	COG	COG5412	Phage-related protein	NA
UHGV-0138012_46	PHROG	phrog_23345	NA	unknown function
UHGV-0138012_46	eggNOG-mapper	1504822.CCNO01000015_gene1084	glycerophosphodiester phosphodiesterase activity	NA
UHGV-0138012_46	Pfam	PF18885	NA	DUF5648
UHGV-0138012_46	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0138012_46	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0138012_47	eggNOG-mapper	1504822.CCNO01000016_gene271	NA	NA
UHGV-0138012_47	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0138012_48	PHROG	phrog_30068	NA	unknown function
UHGV-0138012_48	eggNOG-mapper	1125712.HMPREF1316_2357	the current gene model (or a revised gene model) may contain a premature stop	NA
UHGV-0138012_48	Pfam	PF18885	NA	DUF5648
UHGV-0138012_50	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0138012_52	PHROG	phrog_881	holin	lysis
UHGV-0138012_52	UniRef90	UniRef90_A0A437UU50	Holin	NA
UHGV-0138012_52	eggNOG-mapper	1504822.CCNO01000015_gene626	Putative phage holin Dp-1	NA
UHGV-0138012_52	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0138012_52	Structural annotation	PF16938	NA	NA
UHGV-0138012_54	PHROG	phrog_2742	endolysin	lysis
UHGV-0138012_54	UniRef90	UniRef90_A0A1C5YBQ9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0138012_54	eggNOG-mapper	1504822.CCNO01000015_gene628	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0138012_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0138012_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0138012_54	Structural annotation	PF01520, PF08230, MF_00562, TIGR02883, COG0860	NA	NA