UHGV-0138258

Genome information

Genome length 44,707 bps

CDS count 65

Completeness 99.74% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138258
vOTU ID	vOTU-014285
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_378844
BioSample	SAMN03922500
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.56
Jumbo phage	No

Genome content
Genome length	44,707 bps
GC content	37.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.18%
Average CDS length	623.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138258_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0138258_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0138258_1	UniRef90	UniRef90_A0A412BM28	Transposase	NA
UHGV-0138258_1	eggNOG-mapper	457424.BFAG_02375	Belongs to the 'phage' integrase family	NA
UHGV-0138258_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0138258_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0138258_1	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-0138258_2	PHROG	phrog_21933	NA	unknown function
UHGV-0138258_2	eggNOG-mapper	457424.BFAG_04897	NA	NA
UHGV-0138258_3	UniRef90	UniRef90_UPI00044FE5B9	helix-turn-helix domain-containing protein	NA
UHGV-0138258_3	eggNOG-mapper	762984.HMPREF9445_00136	Transcriptional regulator	NA
UHGV-0138258_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0138258_3	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0138258_8	KOfam	K07686	uhpA; two-component system, NarL family, uhpT operon response regulator UhpA	NA
UHGV-0138258_8	UniRef90	UniRef90_A0A5M5M903	Response regulator transcription factor	NA
UHGV-0138258_8	eggNOG-mapper	1121101.HMPREF1532_02567	helix_turn_helix, Lux Regulon	NA
UHGV-0138258_8	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0138258_8	Structural annotation	PF00196, COG2771	NA	NA
UHGV-0138258_11	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0138258_11	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0138258_13	PHROG	phrog_3657	NA	unknown function
UHGV-0138258_13	eggNOG-mapper	1211813.CAPH01000015_gene728	NA	NA
UHGV-0138258_13	Structural annotation	PF04404	NA	NA
UHGV-0138258_14	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-0138258_14	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138258_14	UniRef90	UniRef90_R5UMS0	YqaJ domain-containing protein	NA
UHGV-0138258_14	eggNOG-mapper	1121100.JCM6294_520	YqaJ-like viral recombinase domain	NA
UHGV-0138258_14	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0138258_14	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0138258_15	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0138258_15	eggNOG-mapper	411901.BACCAC_01189	NA	NA
UHGV-0138258_15	Structural annotation	PF21662, NF038178	NA	NA
UHGV-0138258_16	PHROG	phrog_10608	NA	unknown function
UHGV-0138258_16	eggNOG-mapper	272559.BF9343_2324	NA	NA
UHGV-0138258_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0138258_17	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0138258_17	UniRef90	UniRef90_UPI0018A01643	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0138258_17	eggNOG-mapper	435590.BVU_2854	Endodeoxyribonuclease RusA	NA
UHGV-0138258_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0138258_17	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0138258_19	PHROG	phrog_19415	NA	unknown function
UHGV-0138258_19	UniRef90	UniRef90_UPI0012304DB7	NA	NA
UHGV-0138258_19	eggNOG-mapper	1236514.BAKL01000051_gene3707	NA	NA
UHGV-0138258_19	Pfam	PF19808	NA	DUF6291
UHGV-0138258_19	Structural annotation	PF19808	NA	NA
UHGV-0138258_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0138258_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0138258_20	UniRef90	UniRef90_A0A174JGJ7	DNA helicase	NA
UHGV-0138258_20	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-0138258_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0138258_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0138258_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0138258_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0138258_22	UniRef90	UniRef90_H2A0H1	Putative nuclease	NA
UHGV-0138258_22	Structural annotation	TIGR01453	NA	NA
UHGV-0138258_23	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0138258_23	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0138258_23	UniRef90	UniRef90_UPI0018981E25	N-6 DNA methylase	NA
UHGV-0138258_23	eggNOG-mapper	411476.BACOVA_03912	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0138258_23	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0138258_23	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0138258_23	Structural annotation	TIGR02469, COG0827	NA	NA
UHGV-0138258_24	KOfam	K14059	int; integrase	NA
UHGV-0138258_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0138258_24	UniRef90	UniRef90_UPI001F3B02E3	site-specific integrase	NA
UHGV-0138258_24	eggNOG-mapper	411476.BACOVA_03915	Belongs to the 'phage' integrase family	NA
UHGV-0138258_24	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0138258_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0138258_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0138258_24	Structural annotation	PF00589, PF13102, MF_02055, NF040815, COG4974	NA	NA
UHGV-0138258_25	Structural annotation	PF09465, MF_00667	NA	NA
UHGV-0138258_26	eggNOG-mapper	457424.BFAG_04829	NA	NA
UHGV-0138258_27	UniRef90	UniRef90_UPI0018A90267	NA	NA
UHGV-0138258_27	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0138258_27	Pfam	PF04448	NA	DUF551
UHGV-0138258_27	Structural annotation	NF037951	NA	NA
UHGV-0138258_30	eggNOG-mapper	411901.BACCAC_01173	NA	NA
UHGV-0138258_31	PHROG	phrog_12005	NA	unknown function
UHGV-0138258_33	PHROG	phrog_874	NA	unknown function
UHGV-0138258_33	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0138258_33	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0138258_34	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0138258_34	UniRef90	UniRef90_UPI001C379852	DNA-packaging protein	NA
UHGV-0138258_34	eggNOG-mapper	483215.BACFIN_07524	DNA-packaging protein gp3	NA
UHGV-0138258_34	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0138258_34	Structural annotation	PF16677	NA	NA
UHGV-0138258_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0138258_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0138258_35	UniRef90	UniRef90_UPI001C37D255	phage terminase large subunit	NA
UHGV-0138258_35	eggNOG-mapper	762984.HMPREF9445_00167	Terminase-like family	NA
UHGV-0138258_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0138258_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0138258_35	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0138258_36	PHROG	phrog_28240	NA	unknown function
UHGV-0138258_36	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0138258_36	eggNOG-mapper	762984.HMPREF9445_00168	NA	NA
UHGV-0138258_37	PHROG	phrog_33245	NA	unknown function
UHGV-0138258_37	UniRef90	UniRef90_F3PDW1	Conserved domain protein	NA
UHGV-0138258_37	eggNOG-mapper	357276.EL88_08405	NA	NA
UHGV-0138258_37	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0138258_38	PHROG	phrog_31246	NA	unknown function
UHGV-0138258_38	UniRef90	UniRef90_F3PDW2	Conserved domain protein	NA
UHGV-0138258_38	eggNOG-mapper	762984.HMPREF9445_00170	NA	NA
UHGV-0138258_39	PHROG	phrog_37065	NA	unknown function
UHGV-0138258_39	eggNOG-mapper	762984.HMPREF9445_00171	NA	NA
UHGV-0138258_39	Structural annotation	PF12245, PF06199, TIGR02126, TIGR04488, COG4718	NA	NA
UHGV-0138258_40	PHROG	phrog_33698	NA	unknown function
UHGV-0138258_40	eggNOG-mapper	483215.BACFIN_07520	NA	NA
UHGV-0138258_40	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0138258_41	PHROG	phrog_37298	NA	unknown function
UHGV-0138258_41	UniRef90	UniRef90_A0A0P0M3D9	Erythrocyte binding protein 1	NA
UHGV-0138258_41	eggNOG-mapper	357276.EL88_08385	domain protein	NA
UHGV-0138258_41	COG	COG1511	NA	NA
UHGV-0138258_41	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0138258_42	PHROG	phrog_17790	NA	unknown function
UHGV-0138258_42	UniRef90	UniRef90_A0A7W7AUU3	Aminopeptidase N	NA
UHGV-0138258_42	eggNOG-mapper	357276.EL88_08380	NA	NA
UHGV-0138258_43	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0138258_43	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0138258_43	UniRef90	UniRef90_UPI001C37822A	Clp protease ClpP	NA
UHGV-0138258_43	eggNOG-mapper	357276.EL88_08375	Clp protease	NA
UHGV-0138258_43	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0138258_43	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0138258_43	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0138258_44	PHROG	phrog_38780	NA	unknown function
UHGV-0138258_44	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-0138258_44	eggNOG-mapper	762984.HMPREF9445_00180	NA	NA
UHGV-0138258_44	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0138258_45	PHROG	phrog_21217	NA	unknown function
UHGV-0138258_45	eggNOG-mapper	357276.EL88_08365	NA	NA
UHGV-0138258_46	PHROG	phrog_37138	NA	unknown function
UHGV-0138258_46	UniRef90	UniRef90_F3PDX4	Conserved domain protein	NA
UHGV-0138258_46	eggNOG-mapper	762984.HMPREF9445_00182	NA	NA
UHGV-0138258_47	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0138258_47	eggNOG-mapper	357276.EL88_08355	NA	NA
UHGV-0138258_47	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0138258_48	PHROG	phrog_24616	NA	unknown function
UHGV-0138258_48	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-0138258_48	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-0138258_48	Structural annotation	PF20459	NA	NA
UHGV-0138258_49	COG	COG4675	Phage tail collar domain	NA
UHGV-0138258_50	UniRef90	UniRef90_A0A373G273	NA	NA
UHGV-0138258_50	eggNOG-mapper	411901.BACCAC_01123	NA	NA
UHGV-0138258_50	Pfam	PF14301	NA	DUF4376
UHGV-0138258_50	Structural annotation	PF14301	NA	NA
UHGV-0138258_51	UniRef90	UniRef90_A0A5M5ISN7	Glycosyl transferase	NA
UHGV-0138258_51	eggNOG-mapper	411901.BACCAC_01122	NA	NA
UHGV-0138258_51	Structural annotation	PF10277, COG3371	NA	NA
UHGV-0138258_52	UniRef90	UniRef90_UPI00189CD2F4	phage holin family protein	NA
UHGV-0138258_52	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-0138258_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0138258_52	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-0138258_53	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0138258_53	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0138258_53	UniRef90	UniRef90_A0A413JXI2	Methyltransferase	NA
UHGV-0138258_53	eggNOG-mapper	865938.Weevi_0267	DNA methylase	NA
UHGV-0138258_53	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0138258_53	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0138258_53	COG	COG0863	DNA modification methylase	NA
UHGV-0138258_53	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0138258_54	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0138258_54	PHROG	phrog_894	endolysin	lysis
UHGV-0138258_54	UniRef90	UniRef90_A5ZE08	Peptidase M15	NA
UHGV-0138258_54	eggNOG-mapper	411901.BACCAC_01119	Peptidase M15	NA
UHGV-0138258_54	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0138258_54	COG	COG3108	NA	NA
UHGV-0138258_54	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0138258_55	eggNOG-mapper	411901.BACCAC_01118	NA	NA
UHGV-0138258_57	eggNOG-mapper	1121481.AUAS01000004_gene1673	tail collar domain protein	NA
UHGV-0138258_57	COG	COG4675	Phage tail collar domain	NA
UHGV-0138258_59	PHROG	phrog_26448	NA	unknown function
UHGV-0138258_59	eggNOG-mapper	411901.BACCAC_01114	NA	NA
UHGV-0138258_59	Pfam	PF20647	NA	DUF6808
UHGV-0138258_59	Structural annotation	PF20647	NA	NA
UHGV-0138258_60	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0138258_63	Structural annotation	PF10628	NA	NA
UHGV-0138258_65	eggNOG-mapper	411476.BACOVA_02552	NA	NA