UHGV-0138276

Genome information

Genome length 38,507 bps

CDS count 54

Completeness 87.22% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138276
vOTU ID	vOTU-032470
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_393427
BioSample	SAMN04436758
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	84.12
Jumbo phage	No

Genome content
Genome length	38,507 bps
GC content	51.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	94.43%
Average CDS length	676.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138276_1	KOfam	K14059	int; integrase	NA
UHGV-0138276_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0138276_1	UniRef90	UniRef90_A0A841QZE2	Integrase	NA
UHGV-0138276_1	eggNOG-mapper	1122216.AUHW01000014_gene235	Phage integrase family	NA
UHGV-0138276_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0138276_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0138276_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0138276_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0138276_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0138276_2	UniRef90	UniRef90_A0A496P9T2	Helix-turn-helix domain-containing protein	NA
UHGV-0138276_2	eggNOG-mapper	748727.CLJU_c36670	Peptidase S24-like	NA
UHGV-0138276_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0138276_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138276_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0138276_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0138276_2	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0138276_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0138276_3	UniRef90	UniRef90_A0A0J6ZQ79	HTH cro/C1-type domain-containing protein	NA
UHGV-0138276_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0138276_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138276_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0138276_3	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0138276_14	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138276_14	UniRef90	UniRef90_UPI0018CF832F	NA	NA
UHGV-0138276_14	eggNOG-mapper	1134413.ANNK01000054_gene2216	NA	NA
UHGV-0138276_14	Pfam	PF10926	NA	DUF2800
UHGV-0138276_14	COG	COG2887	RecB family exonuclease	NA
UHGV-0138276_14	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0138276_15	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0138276_15	UniRef90	UniRef90_A0A2S5I3K5	NA	NA
UHGV-0138276_15	eggNOG-mapper	411902.CLOBOL_02546	COG NOG11396 non supervised orthologous group	NA
UHGV-0138276_15	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0138276_15	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0138276_16	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0138276_16	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0138276_16	UniRef90	UniRef90_UPI000836FB3B	DNA polymerase	NA
UHGV-0138276_16	eggNOG-mapper	1262914.BN533_00799	DNA polymerase	NA
UHGV-0138276_16	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0138276_16	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0138276_16	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0138276_17	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0138276_17	UniRef90	UniRef90_UPI001CC6CF21	virulence-associated E family protein	NA
UHGV-0138276_17	eggNOG-mapper	1274524.BSONL12_06063	Virulence-associated protein E	NA
UHGV-0138276_17	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0138276_17	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0138276_17	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0138276_18	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138276_18	UniRef90	UniRef90_A0A840W5X4	VRR-NUC domain-containing protein	NA
UHGV-0138276_18	eggNOG-mapper	1260356.D920_01725	VRR_NUC	NA
UHGV-0138276_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0138276_18	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0138276_19	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0138276_19	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0138276_19	UniRef90	UniRef90_A0A2V2YDX2	SNF2 domain-containing protein	NA
UHGV-0138276_19	eggNOG-mapper	1274524.BSONL12_06073	SNF2 family N-terminal domain	NA
UHGV-0138276_19	PADLOC	DpdE_00012	DpdE	DPD
UHGV-0138276_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0138276_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0138276_19	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0138276_20	PHROG	phrog_236	nucleotide kinase	other
UHGV-0138276_20	UniRef90	UniRef90_A0A418MBD6	NA	NA
UHGV-0138276_20	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0138276_20	Pfam	PF11753	NA	DUF3310
UHGV-0138276_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0138276_21	UniRef90	UniRef90_A0A329NRW1	NA	NA
UHGV-0138276_21	eggNOG-mapper	1095750.HMPREF9970_0179	NA	NA
UHGV-0138276_21	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0138276_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0138276_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0138276_22	UniRef90	UniRef90_A0A841QZN7	Phage terminase small subunit	NA
UHGV-0138276_22	eggNOG-mapper	1071073.KI530547_gene3806	Terminase small subunit	NA
UHGV-0138276_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0138276_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0138276_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0138276_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0138276_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0138276_23	UniRef90	UniRef90_A0A841R1K1	Phage terminase large subunit	NA
UHGV-0138276_23	eggNOG-mapper	546273.VEIDISOL_00710	Phage terminase, large subunit	NA
UHGV-0138276_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0138276_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0138276_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0138276_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0138276_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0138276_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0138276_24	UniRef90	UniRef90_A0A841R2A3	SPP1 family phage portal protein	NA
UHGV-0138276_24	eggNOG-mapper	1121289.JHVL01000082_gene1210	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0138276_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0138276_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0138276_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0138276_25	UniRef90	UniRef90_A0A841R1L1	SPP1 gp7 family putative phage head morphogenesis protein	NA
UHGV-0138276_25	eggNOG-mapper	1111454.HMPREF1250_0178	Phage Mu protein F like protein	NA
UHGV-0138276_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0138276_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0138276_25	COG	COG2369	NA	NA
UHGV-0138276_25	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0138276_27	Structural annotation	PF20124	NA	NA
UHGV-0138276_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0138276_28	UniRef90	UniRef90_A0A841R315	Seryl-tRNA synthetase	NA
UHGV-0138276_28	eggNOG-mapper	1111454.HMPREF1250_0176	Phage minor structural protein GP20	NA
UHGV-0138276_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0138276_28	Structural annotation	PF06810	NA	NA
UHGV-0138276_29	PHROG	phrog_422	major head protein	head and packaging
UHGV-0138276_29	UniRef90	UniRef90_R5SNJ0	Lj928 prophage protein	NA
UHGV-0138276_29	eggNOG-mapper	1123489.AUAN01000010_gene359	NA	NA
UHGV-0138276_29	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0138276_31	eggNOG-mapper	1111454.HMPREF1250_0173	NA	NA
UHGV-0138276_31	Structural annotation	PF05135	NA	NA
UHGV-0138276_32	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0138276_32	UniRef90	UniRef90_A9KQ07	NA	NA
UHGV-0138276_32	eggNOG-mapper	357809.Cphy_2962	NA	NA
UHGV-0138276_32	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0138276_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0138276_33	UniRef90	UniRef90_A0A6L6TPP5	HK97 gp10 family phage protein	NA
UHGV-0138276_33	eggNOG-mapper	546273.VEIDISOL_01061	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0138276_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0138276_33	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0138276_34	PHROG	phrog_525	NA	unknown function
UHGV-0138276_34	UniRef90	UniRef90_A0A841R2B4	Ribosomal protein L39E	NA
UHGV-0138276_34	eggNOG-mapper	1111454.HMPREF1250_0170	NA	NA
UHGV-0138276_34	Pfam	PF20765	NA	DUF6838
UHGV-0138276_34	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0138276_36	PHROG	phrog_279	tail sheath	tail
UHGV-0138276_36	UniRef90	UniRef90_A0A2A2IJB2	Phage tail protein	NA
UHGV-0138276_36	eggNOG-mapper	546273.VEIDISOL_00720	Phage tail sheath C-terminal domain	NA
UHGV-0138276_36	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0138276_36	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0138276_36	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0138276_36	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0138276_37	PHROG	phrog_365	tail protein	tail
UHGV-0138276_37	UniRef90	UniRef90_U7UQT8	Putative core tail protein	NA
UHGV-0138276_37	eggNOG-mapper	1111454.HMPREF1250_0167	Phage tail tube protein	NA
UHGV-0138276_37	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0138276_37	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0138276_38	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0138276_38	UniRef90	UniRef90_R5SN61	XkdN-like protein	NA
UHGV-0138276_38	eggNOG-mapper	1111454.HMPREF1250_0166	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0138276_38	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0138276_38	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0138276_39	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0138276_39	UniRef90	UniRef90_A0A841QWT2	Tape measure domain-containing protein	NA
UHGV-0138276_39	eggNOG-mapper	1111454.HMPREF1250_0164	tape measure	NA
UHGV-0138276_39	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0138276_39	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0138276_39	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0138276_39	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0138276_40	PHROG	phrog_380	endolysin	lysis
UHGV-0138276_40	UniRef90	UniRef90_A0A4R1PW24	LysM domain-containing protein	NA
UHGV-0138276_40	eggNOG-mapper	1123511.KB905868_gene170	PFAM LysM domain	NA
UHGV-0138276_40	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0138276_40	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0138276_41	PHROG	phrog_400	tail protein	tail
UHGV-0138276_41	UniRef90	UniRef90_A0A6L6TN73	Hydrolase	NA
UHGV-0138276_41	eggNOG-mapper	1123511.KB905868_gene169	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0138276_41	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0138276_41	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0138276_42	PHROG	phrog_579	NA	unknown function
UHGV-0138276_42	UniRef90	UniRef90_UPI00142F7EE5	NA	NA
UHGV-0138276_42	eggNOG-mapper	1123511.KB905868_gene168	NA	NA
UHGV-0138276_42	Pfam	PF10844	NA	DUF2577
UHGV-0138276_42	Structural annotation	PF10844, COG0186	NA	NA
UHGV-0138276_43	PHROG	phrog_120	baseplate protein	tail
UHGV-0138276_43	UniRef90	UniRef90_A0A841R2C3	Phage baseplate assembly protein W	NA
UHGV-0138276_43	eggNOG-mapper	1123511.KB905868_gene167	NA	NA
UHGV-0138276_43	Pfam	PF10934	NA	DUF2634
UHGV-0138276_43	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0138276_43	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0138276_44	PHROG	phrog_6	baseplate protein	tail
UHGV-0138276_44	UniRef90	UniRef90_A0A841R1N2	Putative phage protein gp47/JayE	NA
UHGV-0138276_44	eggNOG-mapper	1123511.KB905868_gene166	Baseplate J-like protein	NA
UHGV-0138276_44	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0138276_44	COG	COG3299	NA	NA
UHGV-0138276_44	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0138276_45	PHROG	phrog_521	tail protein	tail
UHGV-0138276_45	UniRef90	UniRef90_UPI000569202C	NA	NA
UHGV-0138276_45	eggNOG-mapper	1195236.CTER_3988	NA	NA
UHGV-0138276_45	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0138276_45	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0138276_45	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0138276_46	PHROG	phrog_2557	virion structural protein	head and packaging
UHGV-0138276_46	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0138276_47	PHROG	phrog_17587	tail fiber protein	tail
UHGV-0138276_47	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0138276_48	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0138276_48	PHROG	phrog_819	tail protein	tail
UHGV-0138276_48	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-0138276_48	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0138276_49	PHROG	phrog_35892	NA	unknown function
UHGV-0138276_49	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0138276_50	PHROG	phrog_199	holin	lysis
UHGV-0138276_50	UniRef90	UniRef90_UPI001D055399	phage holin family protein	NA
UHGV-0138276_50	eggNOG-mapper	883156.HMPREF9282_01264	Bacteriophage holin family	NA
UHGV-0138276_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0138276_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0138276_51	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0138276_51	PHROG	phrog_5867	endolysin	lysis
UHGV-0138276_51	UniRef90	UniRef90_A0A841R5A4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0138276_51	eggNOG-mapper	883156.HMPREF9282_00575	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0138276_51	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0138276_51	Structural annotation	MF_04111	NA	NA
UHGV-0138276_53	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0138276_53	UniRef90	UniRef90_A0A841R2D3	HTH_59 domain-containing protein	NA
UHGV-0138276_53	eggNOG-mapper	1071073.KI530536_gene1228	NA	NA
UHGV-0138276_53	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0138276_53	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0138276_54	Structural annotation	COG1859	NA	NA