UHGV-0138389

Genome information

Genome length 38,046 bps

CDS count 59

Completeness 93.84% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138389
vOTU ID	vOTU-068197
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_367159
BioSample	SAMN03283251
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.64
Jumbo phage	No

Genome content
Genome length	38,046 bps
GC content	40.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.60%
Average CDS length	601.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138389_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0138389_1	PHROG	phrog_291	endolysin	lysis
UHGV-0138389_1	UniRef90	UniRef90_A0A060BQH8	Glyco_hydro_25 (Fragment)	NA
UHGV-0138389_1	eggNOG-mapper	537007.BLAHAN_04972	Glycosyl hydrolases family 25	NA
UHGV-0138389_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0138389_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0138389_1	Structural annotation	PF01183, TIGR02493, COG3757	NA	NA
UHGV-0138389_2	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0138389_3	PHROG	phrog_37799	NA	unknown function
UHGV-0138389_3	UniRef90	UniRef90_A0A373N7C7	Protein utxA	NA
UHGV-0138389_3	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0138389_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0138389_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0138389_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0138389_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0138389_4	PHROG	phrog_20274	NA	unknown function
UHGV-0138389_4	UniRef90	UniRef90_A0A173TUK0	Predicted membrane protein	NA
UHGV-0138389_4	eggNOG-mapper	1235799.C818_04238	Putative ABC-transporter type IV	NA
UHGV-0138389_4	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0138389_4	COG	COG4905	NA	NA
UHGV-0138389_4	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0138389_5	UniRef90	UniRef90_UPI001C0C21D5	acyl carrier protein	NA
UHGV-0138389_5	eggNOG-mapper	1235799.C818_04237	NA	NA
UHGV-0138389_5	Structural annotation	PF14301	NA	NA
UHGV-0138389_6	eggNOG-mapper	553973.CLOHYLEM_06551	to Mitochondrial intermediate peptidase K01410	NA
UHGV-0138389_6	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0138389_6	Structural annotation	NF012201	NA	NA
UHGV-0138389_7	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0138389_7	PHROG	phrog_819	tail protein	tail
UHGV-0138389_7	UniRef90	UniRef90_UPI001A9A6571	collagen-like protein	NA
UHGV-0138389_7	eggNOG-mapper	877414.ATWA01000019_gene2051	NA	NA
UHGV-0138389_7	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0138389_7	Structural annotation	PF05737	NA	NA
UHGV-0138389_8	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0138389_8	PHROG	phrog_819	tail protein	tail
UHGV-0138389_8	UniRef90	UniRef90_UPI0011C154AF	collagen-like protein	NA
UHGV-0138389_8	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-0138389_8	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0138389_9	PHROG	phrog_16164	NA	unknown function
UHGV-0138389_9	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0138389_9	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0138389_10	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0138389_10	PHROG	phrog_10972	tail fiber protein	tail
UHGV-0138389_10	UniRef90	UniRef90_A0A374E9Q0	Collagen-like protein	NA
UHGV-0138389_10	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0138389_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0138389_10	Structural annotation	PF10651, NF007636, COG5456	NA	NA
UHGV-0138389_11	PHROG	phrog_14030	NA	unknown function
UHGV-0138389_11	UniRef90	UniRef90_UPI0018A8CA3B	phage tail tip lysozyme	NA
UHGV-0138389_11	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0138389_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0138389_11	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0138389_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0138389_11	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0138389_12	PHROG	phrog_13289	tail protein	tail
UHGV-0138389_12	UniRef90	UniRef90_UPI000E46B429	phage tail protein	NA
UHGV-0138389_12	eggNOG-mapper	1232452.BAIB02000007_gene1614	Prophage endopeptidase tail	NA
UHGV-0138389_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0138389_12	COG	COG4926	Phage-related protein	NA
UHGV-0138389_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0138389_13	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0138389_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0138389_13	COG	COG4926	Phage-related protein	NA
UHGV-0138389_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0138389_14	UniRef90	UniRef90_A0A3R6C171	Phage tail protein	NA
UHGV-0138389_14	eggNOG-mapper	999413.HMPREF1094_02000	phage tail	NA
UHGV-0138389_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0138389_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0138389_15	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0138389_15	PHROG	phrog_5218	NA	unknown function
UHGV-0138389_15	UniRef90	UniRef90_UPI000E504F09	phage tail tape measure protein	NA
UHGV-0138389_15	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0138389_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0138389_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0138389_15	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0138389_17	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-0138389_17	Structural annotation	PF11836	NA	NA
UHGV-0138389_18	PHROG	phrog_88	major tail protein	tail
UHGV-0138389_18	UniRef90	UniRef90_UPI000E51AB4C	major tail protein	NA
UHGV-0138389_18	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0138389_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0138389_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0138389_19	UniRef90	UniRef90_UPI000E471C89	phage tail protein	NA
UHGV-0138389_19	eggNOG-mapper	97139.C824_05966	NA	NA
UHGV-0138389_19	Structural annotation	PF05657	NA	NA
UHGV-0138389_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0138389_20	UniRef90	UniRef90_A5ZPL5	Phage protein, HK97 gp10 family	NA
UHGV-0138389_20	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0138389_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0138389_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0138389_20	Structural annotation	TIGR01725	NA	NA
UHGV-0138389_21	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0138389_21	UniRef90	UniRef90_A5ZPL6	Putative phage head-tail adaptor	NA
UHGV-0138389_21	eggNOG-mapper	97139.C824_05968	NA	NA
UHGV-0138389_21	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0138389_22	PHROG	phrog_5223	neck protein	connector
UHGV-0138389_22	eggNOG-mapper	1235792.C808_03062	NA	NA
UHGV-0138389_22	Structural annotation	TIGR01560	NA	NA
UHGV-0138389_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0138389_23	UniRef90	UniRef90_UPI000E46F05C	phage major capsid protein	NA
UHGV-0138389_23	eggNOG-mapper	1235792.C808_03063	phage major capsid protein, HK97 family	NA
UHGV-0138389_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0138389_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0138389_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0138389_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0138389_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0138389_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0138389_24	UniRef90	UniRef90_UPI000E4C463A	Clp protease ClpP	NA
UHGV-0138389_24	eggNOG-mapper	411459.RUMOBE_00936	Belongs to the peptidase S14 family	NA
UHGV-0138389_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0138389_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0138389_24	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0138389_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0138389_25	UniRef90	UniRef90_UPI000E534E57	phage portal protein	NA
UHGV-0138389_25	eggNOG-mapper	411459.RUMOBE_00937	NA	NA
UHGV-0138389_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0138389_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0138389_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0138389_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0138389_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0138389_26	UniRef90	UniRef90_UPI000E4C9919	terminase large subunit	NA
UHGV-0138389_26	eggNOG-mapper	1235792.C808_03066	Phage Terminase	NA
UHGV-0138389_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0138389_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0138389_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0138389_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0138389_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0138389_27	UniRef90	UniRef90_UPI000E4F2EB1	phage terminase small subunit P27 family	NA
UHGV-0138389_27	eggNOG-mapper	1235792.C808_03067	Phage terminase, small subunit	NA
UHGV-0138389_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0138389_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0138389_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0138389_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0138389_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138389_28	UniRef90	UniRef90_UPI000E53828D	HNH endonuclease	NA
UHGV-0138389_28	eggNOG-mapper	1235792.C808_03068	HNH endonuclease	NA
UHGV-0138389_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0138389_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0138389_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0138389_30	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-0138389_30	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0138389_30	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0138389_34	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0138389_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0138389_34	UniRef90	UniRef90_A0A844KFT8	Helix-turn-helix domain-containing protein	NA
UHGV-0138389_34	eggNOG-mapper	1048834.TC41_2515	sequence-specific DNA binding	NA
UHGV-0138389_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138389_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0138389_35	PHROG	phrog_8684	NA	unknown function
UHGV-0138389_35	UniRef90	UniRef90_A0A373MXN9	YopX domain-containing protein	NA
UHGV-0138389_35	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0138389_35	Pfam	PF09643	YopX protein	YopX
UHGV-0138389_36	PHROG	phrog_15198	NA	unknown function
UHGV-0138389_36	UniRef90	UniRef90_A0A416P6G8	NA	NA
UHGV-0138389_36	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0138389_36	Pfam	PF04448	NA	DUF551
UHGV-0138389_39	PHROG	phrog_7566	NA	unknown function
UHGV-0138389_39	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0138389_40	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-0138389_41	PHROG	phrog_15077	NA	unknown function
UHGV-0138389_41	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0138389_41	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0138389_41	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0138389_42	PHROG	phrog_8470	NA	unknown function
UHGV-0138389_42	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0138389_42	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0138389_42	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0138389_42	Structural annotation	PF14284	NA	NA
UHGV-0138389_43	PHROG	phrog_4433	NA	unknown function
UHGV-0138389_43	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0138389_43	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0138389_44	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0138389_45	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0138389_45	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0138389_45	UniRef90	UniRef90_D4M578	Ribonuclease HI	NA
UHGV-0138389_45	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0138389_45	Pfam	PF00075	RNase H	RNase_H
UHGV-0138389_45	COG	COG0328	Ribonuclease HI	NA
UHGV-0138389_45	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0138389_46	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0138389_46	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0138389_46	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0138389_50	Structural annotation	PF11195	NA	NA
UHGV-0138389_52	PHROG	phrog_32192	NA	unknown function
UHGV-0138389_53	PHROG	phrog_9607	NA	unknown function
UHGV-0138389_53	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-0138389_53	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0138389_56	NCBIFam	TIGR02098.1	MJ0042-type zinc finger domain-containing protein	NA
UHGV-0138389_56	COG	COG0675	Transposase	NA
UHGV-0138389_58	UniRef90	UniRef90_A0A352SIQ1	HTH cro/C1-type domain-containing protein	NA
UHGV-0138389_58	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0138389_58	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0138389_59	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0138389_59	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0138389_59	UniRef90	UniRef90_A0A7G5N146	XRE family transcriptional regulator	NA
UHGV-0138389_59	eggNOG-mapper	796940.HMPREF9628_00178	Peptidase S24-like	NA
UHGV-0138389_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138389_59	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0138389_59	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0138389_59	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA