UHGV-0138434

Genome information

Genome length 33,064 bps

CDS count 52

Completeness 91.87% (high-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138434
vOTU ID	vOTU-072114
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_389082
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.87% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.46
Jumbo phage	No

Genome content
Genome length	33,064 bps
GC content	45.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.10%
Average CDS length	601.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138434_7	PHROG	phrog_3777	NA	unknown function
UHGV-0138434_7	UniRef90	UniRef90_UPI00142FF24A	NA	NA
UHGV-0138434_7	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0138434_7	Structural annotation	PF18441	NA	NA
UHGV-0138434_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0138434_10	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0138434_10	eggNOG-mapper	1235798.C817_02593	NA	NA
UHGV-0138434_10	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0138434_11	COG	COG0328	Ribonuclease HI	NA
UHGV-0138434_11	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0138434_12	PHROG	phrog_7566	NA	unknown function
UHGV-0138434_12	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-0138434_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0138434_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0138434_13	UniRef90	UniRef90_A0A1C5WD91	Single-stranded DNA-binding protein	NA
UHGV-0138434_13	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-0138434_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0138434_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0138434_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0138434_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0138434_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0138434_14	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0138434_15	PHROG	phrog_8470	NA	unknown function
UHGV-0138434_15	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0138434_15	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0138434_15	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0138434_15	Structural annotation	PF14284	NA	NA
UHGV-0138434_16	PHROG	phrog_15077	NA	unknown function
UHGV-0138434_16	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0138434_16	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0138434_16	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0138434_18	PHROG	phrog_19515	NA	unknown function
UHGV-0138434_18	eggNOG-mapper	457412.RSAG_01163	NA	NA
UHGV-0138434_19	PHROG	phrog_4601	NA	unknown function
UHGV-0138434_19	Structural annotation	PF17888	NA	NA
UHGV-0138434_23	UniRef90	UniRef90_A0A412ELZ1	NA	NA
UHGV-0138434_23	Pfam	PF19789	NA	DUF6273
UHGV-0138434_23	Structural annotation	PF19789	NA	NA
UHGV-0138434_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0138434_26	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0138434_26	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-0138434_26	Structural annotation	PF02996	NA	NA
UHGV-0138434_28	UniRef90	UniRef90_A0A416J0I8	Chemotaxis protein	NA
UHGV-0138434_28	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0138434_28	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0138434_29	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138434_29	UniRef90	UniRef90_A0A1C6J641	HNH domain-containing protein	NA
UHGV-0138434_29	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0138434_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0138434_30	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0138434_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0138434_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0138434_31	UniRef90	UniRef90_A0A1C5WDN1	Phage terminase-like protein, large subunit	NA
UHGV-0138434_31	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0138434_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0138434_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0138434_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0138434_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0138434_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0138434_32	UniRef90	UniRef90_A0A3D4R9X8	Phage portal protein	NA
UHGV-0138434_32	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0138434_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0138434_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0138434_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0138434_32	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0138434_33	KOfam	K06904	NA	NA
UHGV-0138434_33	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0138434_33	UniRef90	UniRef90_A0A3D4RB23	HK97 family phage prohead protease	NA
UHGV-0138434_33	eggNOG-mapper	1414720.CBYM010000002_gene573	Phage prohead protease, HK97 family	NA
UHGV-0138434_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0138434_33	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0138434_33	COG	COG3740	Phage head maturation protease	NA
UHGV-0138434_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0138434_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0138434_34	UniRef90	UniRef90_A0A1C5WC56	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0138434_34	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0138434_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0138434_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0138434_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0138434_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0138434_35	UniRef90	UniRef90_A0A3R6IUJ7	Phage gp6-like head-tail connector protein	NA
UHGV-0138434_35	eggNOG-mapper	397288.C806_00072	Phage gp6-like head-tail connector protein	NA
UHGV-0138434_35	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0138434_35	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0138434_36	PHROG	phrog_25	head closure Hc1	connector
UHGV-0138434_36	UniRef90	UniRef90_A0A3R6GCF7	Head-tail adaptor protein	NA
UHGV-0138434_36	eggNOG-mapper	397288.C806_00071	Phage head-tail joining protein	NA
UHGV-0138434_36	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0138434_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0138434_36	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0138434_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0138434_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0138434_37	UniRef90	UniRef90_A0A3R6JLV1	HK97 gp10 family phage protein	NA
UHGV-0138434_37	eggNOG-mapper	393480.FNP_1691	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0138434_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0138434_37	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0138434_38	PHROG	phrog_525	NA	unknown function
UHGV-0138434_38	eggNOG-mapper	397288.C806_00069	NA	NA
UHGV-0138434_38	Pfam	PF20765	NA	DUF6838
UHGV-0138434_38	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0138434_39	PHROG	phrog_1480	tail sheath	tail
UHGV-0138434_39	UniRef90	UniRef90_A0A3D4RAL2	Phage tail sheath protein	NA
UHGV-0138434_39	eggNOG-mapper	1408324.JNJK01000006_gene1387	Phage tail sheath C-terminal domain	NA
UHGV-0138434_39	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0138434_39	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0138434_39	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0138434_40	PHROG	phrog_365	tail protein	tail
UHGV-0138434_40	UniRef90	UniRef90_A0A1C6J560	Phage-like element PBSX protein xkdM	NA
UHGV-0138434_40	eggNOG-mapper	1408324.JNJK01000006_gene1388	Phage tail tube protein	NA
UHGV-0138434_40	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0138434_40	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0138434_41	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0138434_41	UniRef90	UniRef90_UPI001645A435	XkdN-like protein	NA
UHGV-0138434_41	eggNOG-mapper	1408324.JNJK01000006_gene1389	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0138434_41	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0138434_41	Structural annotation	PF08890	NA	NA
UHGV-0138434_42	PHROG	phrog_2722	NA	unknown function
UHGV-0138434_43	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0138434_43	UniRef90	UniRef90_A0A3D4R9X1	Phage tail tape measure protein	NA
UHGV-0138434_43	eggNOG-mapper	1408324.JNJK01000006_gene1391	Phage-related minor tail protein	NA
UHGV-0138434_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0138434_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0138434_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0138434_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0138434_44	PHROG	phrog_380	endolysin	lysis
UHGV-0138434_44	UniRef90	UniRef90_A0A6N9QEX3	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0138434_44	eggNOG-mapper	665950.HMPREF1025_01343	LysM domain	NA
UHGV-0138434_44	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0138434_44	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0138434_45	PHROG	phrog_400	tail protein	tail
UHGV-0138434_45	UniRef90	UniRef90_A0A6L5XWJ4	NlpC/P60 family protein	NA
UHGV-0138434_45	eggNOG-mapper	397288.C806_00062	NLP P60 protein	NA
UHGV-0138434_45	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0138434_45	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0138434_46	Structural annotation	PF01957, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0138434_47	PHROG	phrog_120	baseplate protein	tail
UHGV-0138434_47	UniRef90	UniRef90_A0A3R6GDN3	NA	NA
UHGV-0138434_47	eggNOG-mapper	397288.C806_00060	NA	NA
UHGV-0138434_47	Pfam	PF10934	NA	DUF2634
UHGV-0138434_47	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0138434_47	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0138434_48	PHROG	phrog_1608	tail protein	tail
UHGV-0138434_48	UniRef90	UniRef90_A0A3D4RAP0	Baseplate_J domain-containing protein	NA
UHGV-0138434_48	eggNOG-mapper	1408324.JNJK01000006_gene1396	Baseplate J-like protein	NA
UHGV-0138434_48	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0138434_48	COG	COG3299	NA	NA
UHGV-0138434_48	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0138434_49	PHROG	phrog_521	tail protein	tail
UHGV-0138434_49	UniRef90	UniRef90_UPI001A61F525	NA	NA
UHGV-0138434_49	eggNOG-mapper	397288.C806_00058	NA	NA
UHGV-0138434_49	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0138434_49	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0138434_49	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0138434_50	eggNOG-mapper	1408428.JNJP01000079_gene3365	Phage tail-collar fibre protein	NA
UHGV-0138434_50	COG	COG4675	Phage tail collar domain	NA
UHGV-0138434_51	PHROG	phrog_16164	NA	unknown function
UHGV-0138434_51	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0138434_52	PHROG	phrog_199	holin	lysis
UHGV-0138434_52	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-0138434_52	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0138434_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0138434_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0138434_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0138434_52	Structural annotation	PF05105, COG4824	NA	NA