UHGV-0138644

Genome information

Genome length 45,045 bps

CDS count 57

Completeness 96.98% (high-quality)

geNomad score 0.9671

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138644
vOTU ID	vOTU-077922
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_381380
BioSample	SAMN04158616
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9671
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.77
Jumbo phage	No

Genome content
Genome length	45,045 bps
GC content	51.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	94.61%
Average CDS length	751.90 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138644_1	PHROG	phrog_1847	NA	unknown function
UHGV-0138644_1	UniRef90	UniRef90_C3JB91	T5orf172 domain-containing protein	NA
UHGV-0138644_1	eggNOG-mapper	553175.POREN0001_1534	T5orf172	NA
UHGV-0138644_1	Pfam	PF13250	NA	DUF4041
UHGV-0138644_1	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0138644_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0138644_1	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0138644_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0138644_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0138644_2	UniRef90	UniRef90_UPI0018997A55	helix-turn-helix transcriptional regulator	NA
UHGV-0138644_2	eggNOG-mapper	357276.EL88_11575	Transcriptional regulator	NA
UHGV-0138644_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0138644_2	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0138644_2	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0138644_5	Structural annotation	PF14084	NA	NA
UHGV-0138644_8	PHROG	phrog_14584	NA	unknown function
UHGV-0138644_8	eggNOG-mapper	1268240.ATFI01000008_gene2554	NA	NA
UHGV-0138644_9	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0138644_9	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0138644_9	UniRef90	UniRef90_UPI0018A94F46	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0138644_9	eggNOG-mapper	1268240.ATFI01000008_gene2555	NA	NA
UHGV-0138644_9	Pfam	PF12684	NA	DUF3799
UHGV-0138644_9	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0138644_11	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138644_11	UniRef90	UniRef90_UPI0018AC7931	recombination protein NinG	NA
UHGV-0138644_11	eggNOG-mapper	762982.HMPREF9442_00543	NA	NA
UHGV-0138644_11	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0138644_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0138644_11	Structural annotation	PF05766	NA	NA
UHGV-0138644_12	PHROG	phrog_26490	NA	unknown function
UHGV-0138644_12	eggNOG-mapper	1178825.ALIH01000017_gene686	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0138644_12	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-0138644_13	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138644_13	UniRef90	UniRef90_UPI0018A9D85E	HNH endonuclease	NA
UHGV-0138644_13	eggNOG-mapper	657309.BXY_08710	HNH nucleases	NA
UHGV-0138644_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0138644_14	PHROG	phrog_16304	NA	unknown function
UHGV-0138644_14	UniRef90	UniRef90_UPI001898327E	NA	NA
UHGV-0138644_14	Pfam	PF19808	NA	DUF6291
UHGV-0138644_15	PHROG	phrog_15937	NA	unknown function
UHGV-0138644_15	eggNOG-mapper	742727.HMPREF9447_04879	NA	NA
UHGV-0138644_16	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0138644_16	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0138644_16	UniRef90	UniRef90_UPI001B39CDDA	site-specific DNA-methyltransferase	NA
UHGV-0138644_16	eggNOG-mapper	1123304.AQYA01000037_gene207	DNA methylase	NA
UHGV-0138644_16	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0138644_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0138644_16	COG	COG0863	DNA modification methylase	NA
UHGV-0138644_16	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0138644_17	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0138644_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0138644_17	UniRef90	UniRef90_A0A5B5VP29	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0138644_17	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0138644_17	PADLOC	SspD_00001	SspD	SSP
UHGV-0138644_17	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0138644_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0138644_17	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0138644_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0138644_18	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0138644_18	UniRef90	UniRef90_UPI0018AB7658	DNA cytosine methyltransferase	NA
UHGV-0138644_18	eggNOG-mapper	445970.ALIPUT_00030	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0138644_18	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0138644_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0138644_18	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0138644_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0138644_18	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0138644_21	PHROG	phrog_8684	NA	unknown function
UHGV-0138644_21	UniRef90	UniRef90_UPI00189E151F	YopX family protein	NA
UHGV-0138644_21	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-0138644_21	Pfam	PF09643	YopX protein	YopX
UHGV-0138644_21	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0138644_21	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0138644_22	PHROG	phrog_874	NA	unknown function
UHGV-0138644_22	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0138644_22	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0138644_25	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0138644_28	eggNOG-mapper	1366050.N234_31825	HNH endonuclease	NA
UHGV-0138644_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0138644_29	UniRef90	UniRef90_A0A191ZDI3	Putative terminase small subunit	NA
UHGV-0138644_29	eggNOG-mapper	935837.JAEK01000054_gene1463	DNA-packaging protein gp3	NA
UHGV-0138644_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0138644_29	Structural annotation	PF16677	NA	NA
UHGV-0138644_30	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0138644_30	UniRef90	UniRef90_UPI001C3B1480	Phage terminase large subunit	NA
UHGV-0138644_30	eggNOG-mapper	445970.ALIPUT_00048	domain protein	NA
UHGV-0138644_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0138644_30	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0138644_30	COG	COG5410	NA	NA
UHGV-0138644_30	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0138644_31	PHROG	phrog_8193	major head protein	head and packaging
UHGV-0138644_31	UniRef90	UniRef90_I6S2L8	Putative tail protein	NA
UHGV-0138644_31	eggNOG-mapper	1176422.I6S2L8_9CAUD	NA	NA
UHGV-0138644_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0138644_32	PHROG	phrog_7376	portal protein	head and packaging
UHGV-0138644_32	UniRef90	UniRef90_A0A7U3MXY7	Portal protein	NA
UHGV-0138644_32	eggNOG-mapper	1121101.HMPREF1532_02599	NA	NA
UHGV-0138644_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0138644_34	PHROG	phrog_7970	virion structural protein	head and packaging
UHGV-0138644_34	UniRef90	UniRef90_W8CQQ4	Putative capsid associated protein	NA
UHGV-0138644_34	eggNOG-mapper	1176422.I6S6X7_9CAUD	NA	NA
UHGV-0138644_34	Structural annotation	PF21662	NA	NA
UHGV-0138644_35	PHROG	phrog_7231	virion structural protein	head and packaging
UHGV-0138644_35	UniRef90	UniRef90_A0A7U3MY95	Major capsid protein	NA
UHGV-0138644_35	eggNOG-mapper	99179.B5TRC7_9CAUD	NA	NA
UHGV-0138644_35	Structural annotation	PF05065, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0138644_36	PHROG	phrog_8189	NA	unknown function
UHGV-0138644_36	eggNOG-mapper	1105171.H2A0E2_9CAUD	NA	NA
UHGV-0138644_36	Structural annotation	PF02839, NF041539	NA	NA
UHGV-0138644_37	PHROG	phrog_6195	tail protein	tail
UHGV-0138644_37	UniRef90	UniRef90_A0A7U3MW91	Virion morphogenesis protein	NA
UHGV-0138644_37	eggNOG-mapper	1121101.HMPREF1532_02604	NA	NA
UHGV-0138644_37	Structural annotation	PF05069	NA	NA
UHGV-0138644_38	PHROG	phrog_8145	NA	unknown function
UHGV-0138644_38	eggNOG-mapper	1176422.I6R1A5_9CAUD	NA	NA
UHGV-0138644_38	Structural annotation	PF08873	NA	NA
UHGV-0138644_40	PHROG	phrog_8914	virion structural protein	head and packaging
UHGV-0138644_40	UniRef90	UniRef90_A0A088C4G9	Tail assembly chaperone	NA
UHGV-0138644_40	eggNOG-mapper	99179.B5TR86_9CAUD	NA	NA
UHGV-0138644_41	PHROG	phrog_20660	tail length tape measure protein	tail
UHGV-0138644_41	UniRef90	UniRef90_H2A0C7	Putative DNA segregation protein	NA
UHGV-0138644_41	eggNOG-mapper	1105171.H2A0C7_9CAUD	NA	NA
UHGV-0138644_41	Structural annotation	PF10145, PF02321, TIGR01760, COG5280	NA	NA
UHGV-0138644_42	PHROG	phrog_19383	NA	unknown function
UHGV-0138644_42	eggNOG-mapper	1105171.H2A0C6_9CAUD	NA	NA
UHGV-0138644_42	Structural annotation	PF17994, NF033675	NA	NA
UHGV-0138644_43	KOfam	K13735	yeeJ; adhesin/invasin	NA
UHGV-0138644_43	PHROG	phrog_35885	NA	unknown function
UHGV-0138644_43	UniRef90	UniRef90_UPI000AF88608	carboxypeptidase-like regulatory domain-containing protein	NA
UHGV-0138644_43	eggNOG-mapper	1176422.I6S2N2_9CAUD	NA	NA
UHGV-0138644_45	Pfam	PF07196	Flagellin hook IN motif	Flagellin_IN
UHGV-0138644_46	Structural annotation	PF07603	NA	NA
UHGV-0138644_47	Structural annotation	PF02185	NA	NA
UHGV-0138644_49	eggNOG-mapper	449673.BACSTE_00852	NA	NA
UHGV-0138644_50	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0138644_50	PHROG	phrog_894	endolysin	lysis
UHGV-0138644_50	UniRef90	UniRef90_A0A143XLQ9	Peptidase M15	NA
UHGV-0138644_50	eggNOG-mapper	547042.BACCOPRO_00949	Peptidase M15	NA
UHGV-0138644_50	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0138644_50	COG	COG3108	NA	NA
UHGV-0138644_50	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0138644_51	PHROG	phrog_26448	NA	unknown function
UHGV-0138644_51	Pfam	PF20647	NA	DUF6808
UHGV-0138644_51	Structural annotation	PF20647	NA	NA
UHGV-0138644_52	PHROG	phrog_1762	NA	unknown function
UHGV-0138644_52	UniRef90	UniRef90_A0A396M4G4	NA	NA
UHGV-0138644_52	eggNOG-mapper	1230343.CANP01000031_gene2337	NA	NA
UHGV-0138644_52	Pfam	PF11185	NA	DUF2971
UHGV-0138644_53	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0138644_53	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0138644_53	UniRef90	UniRef90_UPI00050A2096	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0138644_53	eggNOG-mapper	1121887.AUDK01000033_gene1450	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0138644_53	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0138644_53	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0138644_54	UniRef90	UniRef90_UPI00050A273C	helix-turn-helix transcriptional regulator	NA
UHGV-0138644_54	eggNOG-mapper	1121887.AUDK01000033_gene1451	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0138644_54	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0138644_54	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-0138644_56	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0138644_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0138644_56	UniRef90	UniRef90_R5UB18	Site-specific recombinase XerD	NA
UHGV-0138644_56	eggNOG-mapper	679935.Alfi_3042	Belongs to the 'phage' integrase family	NA
UHGV-0138644_56	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0138644_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0138644_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0138644_56	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0138644_57	eggNOG-mapper	435591.BDI_3751	NA	NA