UHGV-0138662

Genome information

Genome length 38,043 bps

CDS count 57

Completeness 89.67% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138662
vOTU ID	vOTU-024641
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_373540
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.52
Jumbo phage	No

Genome content
Genome length	38,043 bps
GC content	39.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.37%
Average CDS length	627.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138662_1	eggNOG-mapper	411469.EUBHAL_02546	MobA MobL family protein	NA
UHGV-0138662_1	Pfam	PF03389	MobA/MobL family	MobA_MobL
UHGV-0138662_1	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0138662_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0138662_3	PHROG	phrog_10250	NA	unknown function
UHGV-0138662_3	UniRef90	UniRef90_A0A8D9PDX0	Large terminase	NA
UHGV-0138662_3	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-0138662_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0138662_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0138662_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0138662_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0138662_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0138662_4	UniRef90	UniRef90_A0A1V5S9S5	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0138662_4	eggNOG-mapper	86416.Clopa_2538	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0138662_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0138662_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0138662_5	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0138662_5	UniRef90	UniRef90_A0A8D9PDR7	Minor structural protein	NA
UHGV-0138662_5	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0138662_5	Structural annotation	PF06810	NA	NA
UHGV-0138662_6	PHROG	phrog_840	major head protein	head and packaging
UHGV-0138662_6	UniRef90	UniRef90_A0A6H1F174	Phage capsid protein	NA
UHGV-0138662_6	eggNOG-mapper	562981.HMPREF0428_00981	NA	NA
UHGV-0138662_6	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0138662_7	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0138662_7	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0138662_8	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0138662_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0138662_9	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0138662_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0138662_11	PHROG	phrog_1407	major tail protein	tail
UHGV-0138662_11	UniRef90	UniRef90_A0A8D9UH75	Major tail protein	NA
UHGV-0138662_11	eggNOG-mapper	398512.JQKC01000005_gene5456	NA	NA
UHGV-0138662_11	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0138662_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0138662_12	Structural annotation	PF11836	NA	NA
UHGV-0138662_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0138662_14	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-0138662_14	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0138662_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0138662_15	PHROG	phrog_1194	NA	unknown function
UHGV-0138662_15	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0138662_15	Pfam	PF20458	NA	DUF6711
UHGV-0138662_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0138662_16	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0138662_18	PHROG	phrog_16164	NA	unknown function
UHGV-0138662_18	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA
UHGV-0138662_19	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA
UHGV-0138662_21	PHROG	phrog_937	hemolysin	other
UHGV-0138662_22	KOfam	K07273	acm; lysozyme	NA
UHGV-0138662_22	PHROG	phrog_291	endolysin	lysis
UHGV-0138662_22	UniRef90	UniRef90_A0A3D1HW72	1,4-beta-N-acetylmuramidase	NA
UHGV-0138662_22	eggNOG-mapper	518637.EUBIFOR_00103	Glycosyl hydrolase family 25	NA
UHGV-0138662_22	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0138662_22	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0138662_22	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0138662_22	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0138662_23	PHROG	phrog_443	holin	lysis
UHGV-0138662_23	UniRef90	UniRef90_A0A1M6RHE6	Holin, r1t family	NA
UHGV-0138662_23	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0138662_23	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0138662_23	Structural annotation	PF16945	NA	NA
UHGV-0138662_25	UniRef90	UniRef90_A0A7C6W8B1	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0138662_26	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0138662_26	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0138662_26	UniRef90	UniRef90_A0A7C6S767	DEAD/DEAH box helicase	NA
UHGV-0138662_26	eggNOG-mapper	926692.AZYG01000022_gene2593	snf2 family	NA
UHGV-0138662_26	PADLOC	DpdE_00003	DpdE	DPD
UHGV-0138662_26	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0138662_26	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0138662_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0138662_26	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0138662_27	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0138662_27	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0138662_27	UniRef90	UniRef90_A0A8D9PDS0	DNA polymerase	NA
UHGV-0138662_27	eggNOG-mapper	10685.B6V2J7_BPSP1	DNA polymerase family A	NA
UHGV-0138662_27	PADLOC	drt-cluster58	DRT	DRT
UHGV-0138662_27	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0138662_27	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0138662_27	Structural annotation	PF00476, PF01612, MF_04101, NF011541, COG0749	NA	NA
UHGV-0138662_28	Structural annotation	PF01702, MF_01634, TIGR00432, COG0343	NA	NA
UHGV-0138662_29	PHROG	phrog_236	nucleotide kinase	other
UHGV-0138662_29	UniRef90	UniRef90_A0A3M1R3H0	NA	NA
UHGV-0138662_29	eggNOG-mapper	247490.KSU1_C1482	NA	NA
UHGV-0138662_29	Pfam	PF11753	NA	DUF3310
UHGV-0138662_29	Structural annotation	PF11753	NA	NA
UHGV-0138662_30	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0138662_30	UniRef90	UniRef90_UPI001788C72C	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0138662_30	eggNOG-mapper	1078083.HMPREF1208_00639	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0138662_30	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0138662_30	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0138662_31	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-0138662_31	PHROG	phrog_4899	NA	unknown function
UHGV-0138662_31	UniRef90	UniRef90_A0A8D9PDW2	Putative vitamin uptake transporter	NA
UHGV-0138662_31	eggNOG-mapper	1002367.HMPREF0673_01941	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	NA
UHGV-0138662_31	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-0138662_31	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-0138662_31	COG	COG1738	NA	NA
UHGV-0138662_31	HAMAP	MF_02088	Probable queuosine precursor transporter	NA
UHGV-0138662_31	Structural annotation	PF02592, MF_02088, TIGR00697, COG1738	NA	NA
UHGV-0138662_32	KOfam	K06920	queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]	NA
UHGV-0138662_32	PHROG	phrog_1550	QueC-like queuosine biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0138662_32	UniRef90	UniRef90_A0A6A8M5Q4	7-cyano-7-deazaguanine synthase	NA
UHGV-0138662_32	eggNOG-mapper	591001.Acfer_1643	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	NA
UHGV-0138662_32	PADLOC	QueC_00001	QueC	CBASS
UHGV-0138662_32	Pfam	PF06508	Queuosine biosynthesis protein QueC	QueC
UHGV-0138662_32	NCBIFam	TIGR00364.1	7-cyano-7-deazaguanine synthase QueC	NA
UHGV-0138662_32	COG	COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	NA
UHGV-0138662_32	HAMAP	MF_01633	7-cyano-7-deazaguanine synthase [queC]	NA
UHGV-0138662_32	Structural annotation	PF06508, MF_01633, TIGR00364, COG0603	NA	NA
UHGV-0138662_33	Structural annotation	PF21100, MF_01911, NF040642, COG0640	NA	NA
UHGV-0138662_34	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0138662_34	PHROG	phrog_18685	NA	unknown function
UHGV-0138662_34	UniRef90	UniRef90_A0A8D9PDW5	DNA directed DNA polymerase	NA
UHGV-0138662_34	eggNOG-mapper	360911.EAT1b_0006	DNA primase activity	NA
UHGV-0138662_34	PADLOC	drt-cluster192	DRT	DRT
UHGV-0138662_34	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0138662_34	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0138662_34	Pfam	PF00493	MCM P-loop domain	MCM
UHGV-0138662_34	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0138662_34	Structural annotation	PF00493, PF01807, PF13155, PF14947, MF_00974, MF_01314, NF040949, TIGR01391, COG1241	NA	NA
UHGV-0138662_35	PHROG	phrog_3724	NA	unknown function
UHGV-0138662_35	Pfam	PF05037	NA	DUF669
UHGV-0138662_35	Structural annotation	PF05037, NF011800	NA	NA
UHGV-0138662_36	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0138662_36	UniRef90	UniRef90_A0A8D9PDX3	AAA domain protein	NA
UHGV-0138662_36	eggNOG-mapper	1499967.BAYZ01000197_gene3023	plasmid maintenance	NA
UHGV-0138662_36	Pfam	PF13479	AAA domain	AAA_24
UHGV-0138662_36	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0138662_36	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0138662_37	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138662_37	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0138662_37	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-0138662_38	PHROG	phrog_3489	NA	unknown function
UHGV-0138662_38	Structural annotation	PF19157, NF002506	NA	NA
UHGV-0138662_39	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0138662_42	UniRef90	UniRef90_A0A8D9PE04	Cyanate hydratase	NA
UHGV-0138662_45	PHROG	phrog_10714	NA	unknown function
UHGV-0138662_50	Pfam	PF12116	Stage III sporulation protein D	SpoIIID
UHGV-0138662_56	Structural annotation	PF13973, TIGR00739, COG4481	NA	NA