UHGV-0138694

Genome information

Genome length 36,462 bps

CDS count 52

Completeness 91.25% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138694
vOTU ID	vOTU-061632
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_365405
BioSample	SAMN03283291
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.25% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.41
Jumbo phage	No

Genome content
Genome length	36,462 bps
GC content	50.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.35%
Average CDS length	667.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138694_3	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-0138694_3	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0138694_3	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0138694_5	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0138694_5	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0138694_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0138694_6	PHROG	phrog_291	endolysin	lysis
UHGV-0138694_6	UniRef90	UniRef90_R6AN85	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0138694_6	eggNOG-mapper	1273103.NM10_01741	Glycosyl hydrolase family 25	NA
UHGV-0138694_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0138694_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0138694_6	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0138694_8	UniRef90	UniRef90_R6AE25	Conserved domain protein	NA
UHGV-0138694_8	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-0138694_8	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0138694_8	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0138694_9	PHROG	phrog_32639	NA	unknown function
UHGV-0138694_9	Structural annotation	PF21611	NA	NA
UHGV-0138694_10	KOfam	K14059	int; integrase	NA
UHGV-0138694_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0138694_10	UniRef90	UniRef90_A0A3B9DV66	Recombinase XerC	NA
UHGV-0138694_10	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0138694_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0138694_10	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0138694_10	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0138694_11	PHROG	phrog_2557	virion structural protein	head and packaging
UHGV-0138694_11	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-0138694_11	COG	COG4675	Phage tail collar domain	NA
UHGV-0138694_12	PHROG	phrog_1101	tail protein	tail
UHGV-0138694_12	UniRef90	UniRef90_A0A3B9DV75	Phage-tail_3 domain-containing protein	NA
UHGV-0138694_12	eggNOG-mapper	742743.HMPREF9453_00552	Putative phage tail protein	NA
UHGV-0138694_12	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0138694_12	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0138694_12	Structural annotation	PF13550, NF040662, COG4733	NA	NA
UHGV-0138694_13	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0138694_13	PHROG	phrog_329	minor tail protein	tail
UHGV-0138694_13	UniRef90	UniRef90_A0A3B9DUZ7	Hydrolase	NA
UHGV-0138694_13	eggNOG-mapper	742743.HMPREF9453_00553	cysteine-type peptidase activity	NA
UHGV-0138694_13	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0138694_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0138694_13	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0138694_14	PHROG	phrog_778	tail assembly protein	tail
UHGV-0138694_14	UniRef90	UniRef90_A0A3B9DWJ4	NA	NA
UHGV-0138694_14	eggNOG-mapper	742743.HMPREF9453_00554	NA	NA
UHGV-0138694_14	Pfam	PF09931	NA	DUF2163
UHGV-0138694_14	COG	COG5449	NA	NA
UHGV-0138694_14	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0138694_15	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0138694_15	UniRef90	UniRef90_UPI000C7C1E73	NA	NA
UHGV-0138694_15	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0138694_15	Pfam	PF09343	NA	DUF2460
UHGV-0138694_15	COG	COG5448	NA	NA
UHGV-0138694_15	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0138694_16	PHROG	phrog_12798	NA	unknown function
UHGV-0138694_16	UniRef90	UniRef90_A0A3B9DV14	TMP_3 domain-containing protein	NA
UHGV-0138694_16	eggNOG-mapper	1000569.HMPREF1040_0188	tape measure	NA
UHGV-0138694_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0138694_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0138694_16	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0138694_16	Structural annotation	PF20155, TIGR01760, NF033930, COG3941	NA	NA
UHGV-0138694_17	eggNOG-mapper	568816.Acin_1229	NA	NA
UHGV-0138694_18	Structural annotation	PF11836	NA	NA
UHGV-0138694_19	PHROG	phrog_1407	major tail protein	tail
UHGV-0138694_19	UniRef90	UniRef90_A0A3B9DV80	Phage major tail protein, TP901-1 family	NA
UHGV-0138694_19	eggNOG-mapper	1000569.HMPREF1040_0191	Phage tail tube protein	NA
UHGV-0138694_19	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0138694_19	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0138694_19	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0138694_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0138694_20	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0138694_21	eggNOG-mapper	1000569.HMPREF1040_0193	NA	NA
UHGV-0138694_22	UniRef90	UniRef90_UPI0005090E80	HK97 gp10 family phage protein	NA
UHGV-0138694_22	eggNOG-mapper	983328.AFGH01000032_gene923	Phage virion morphogenesis	NA
UHGV-0138694_22	COG	COG5005	NA	NA
UHGV-0138694_22	Structural annotation	TIGR01725	NA	NA
UHGV-0138694_23	PHROG	phrog_212	major head protein	head and packaging
UHGV-0138694_23	UniRef90	UniRef90_A0A3B9DUZ1	Phage capsid protein	NA
UHGV-0138694_23	eggNOG-mapper	1122918.KB907248_gene4499	NA	NA
UHGV-0138694_23	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0138694_24	eggNOG-mapper	706434.HMPREF9429_00526	NA	NA
UHGV-0138694_24	Structural annotation	PF06810	NA	NA
UHGV-0138694_25	PHROG	phrog_29609	NA	unknown function
UHGV-0138694_25	UniRef90	UniRef90_R5BIR3	Ntox50 domain-containing protein	NA
UHGV-0138694_25	eggNOG-mapper	706434.HMPREF9429_00528	NA	NA
UHGV-0138694_25	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0138694_25	Structural annotation	PF18451	NA	NA
UHGV-0138694_26	PHROG	phrog_145	portal protein	head and packaging
UHGV-0138694_26	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-0138694_26	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-0138694_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0138694_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0138694_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0138694_27	UniRef90	UniRef90_A0A380NJL4	Phage terminase, large subunit, PBSX family	NA
UHGV-0138694_27	eggNOG-mapper	742733.HMPREF9469_01827	Terminase RNAseH like domain	NA
UHGV-0138694_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0138694_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0138694_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0138694_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0138694_29	KOfam	K22226	ahbC; Fe-coproporphyrin III synthase	NA
UHGV-0138694_29	PHROG	phrog_21308	radical SAM domain-containing protein	other
UHGV-0138694_29	UniRef90	UniRef90_H3K6T6	Radical SAM core domain-containing protein	NA
UHGV-0138694_29	eggNOG-mapper	411459.RUMOBE_01047	Radical SAM superfamily	NA
UHGV-0138694_29	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0138694_29	COG	COG0535	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	NA
UHGV-0138694_29	Structural annotation	PF00834, MF_00660, NF012164, COG0535	NA	NA
UHGV-0138694_30	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0138694_30	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0138694_30	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0138694_30	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0138694_30	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0138694_31	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0138694_31	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0138694_31	UniRef90	UniRef90_D6KP87	Prophage LambdaWp4, DNA methylase	NA
UHGV-0138694_31	eggNOG-mapper	1416334.X2CXX2_9CAUD	N-methyltransferase activity	NA
UHGV-0138694_31	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0138694_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0138694_31	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0138694_32	Structural annotation	PF08281, TIGR01636, COG2739	NA	NA
UHGV-0138694_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0138694_35	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0138694_35	UniRef90	UniRef90_R6AUC5	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0138694_35	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-0138694_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0138694_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0138694_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0138694_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0138694_38	UniRef90	UniRef90_R7CMF9	Single-stranded DNA-binding protein	NA
UHGV-0138694_38	eggNOG-mapper	592028.GCWU000321_00485	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0138694_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0138694_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0138694_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0138694_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0138694_38	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0138694_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0138694_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0138694_40	UniRef90	UniRef90_A0A517DS75	IstB-like ATP binding protein	NA
UHGV-0138694_40	eggNOG-mapper	1401067.HMPREF0872_03455	DNA-dependent DNA replication	NA
UHGV-0138694_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0138694_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0138694_40	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0138694_41	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0138694_41	UniRef90	UniRef90_R9KLZ4	Phage_rep_org_N domain-containing protein	NA
UHGV-0138694_41	eggNOG-mapper	1235793.C809_02194	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0138694_41	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0138694_41	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0138694_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0138694_41	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0138694_42	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0138694_42	PHROG	phrog_22514	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138694_42	UniRef90	UniRef90_UPI0018C6C2FD	HNH endonuclease	NA
UHGV-0138694_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0138694_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0138694_42	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0138694_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0138694_43	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0138694_43	Structural annotation	PF05772	NA	NA
UHGV-0138694_44	PHROG	phrog_14970	NA	unknown function
UHGV-0138694_44	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0138694_44	eggNOG-mapper	411476.BACOVA_03882	double-strand break repair protein	NA
UHGV-0138694_44	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0138694_44	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0138694_44	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0138694_45	PHROG	phrog_674	NA	unknown function
UHGV-0138694_45	UniRef90	UniRef90_A0A2S0M9A8	NA	NA
UHGV-0138694_45	eggNOG-mapper	318464.IO99_00465	NA	NA
UHGV-0138694_45	Pfam	PF07083	NA	DUF1351
UHGV-0138694_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0138694_51	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0138694_51	UniRef90	UniRef90_A0A7X9GM97	Helix-turn-helix transcriptional regulator (Fragment)	NA
UHGV-0138694_51	eggNOG-mapper	411461.DORFOR_01990	Helix-turn-helix domain	NA
UHGV-0138694_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138694_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0138694_51	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0138694_52	eggNOG-mapper	1200567.JNKD01000011_gene667	NA	NA
UHGV-0138694_52	Structural annotation	PF04232, MF_01122, NF003088	NA	NA