UHGV-0138696

Genome information

vOTU vOTU-032017

Genome length 24,553 bps

CDS count 48

Completeness 58.40% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138696
vOTU ID	vOTU-032017
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370516
BioSample	SAMN03281006
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.56
Jumbo phage	No

Genome content
Genome length	24,553 bps
GC content	49.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	85.71%
Average CDS length	441.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138696_1	PHROG	phrog_14911	NA	unknown function
UHGV-0138696_1	eggNOG-mapper	198214.SF0216	Phage P22-like portal protein	NA
UHGV-0138696_1	Pfam	PF16510	Phage P22-like portal protein	P22_portal
UHGV-0138696_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0138696_2	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0138696_2	UniRef90	UniRef90_A0A345CE66	Terminase	NA
UHGV-0138696_2	eggNOG-mapper	1127357.I1TEI5_9CAUD	Terminase-like family	NA
UHGV-0138696_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0138696_2	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0138696_2	HAMAP	MF_04148	Terminase, large subunit	NA
UHGV-0138696_2	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0138696_3	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0138696_3	UniRef90	UniRef90_UPI000336903B	DNA-packaging protein	NA
UHGV-0138696_3	eggNOG-mapper	90371.CY43_01855	DNA-packaging protein gp3	NA
UHGV-0138696_3	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0138696_3	Structural annotation	PF16677	NA	NA
UHGV-0138696_4	PHROG	phrog_2423	NA	unknown function
UHGV-0138696_4	eggNOG-mapper	1141137.K4FBA3_9CAUD	NA	NA
UHGV-0138696_5	PHROG	phrog_1365	NA	unknown function
UHGV-0138696_5	eggNOG-mapper	90371.CY43_01845	NA	NA
UHGV-0138696_6	PHROG	phrog_571	NA	unknown function
UHGV-0138696_6	UniRef90	UniRef90_A0A721BFP4	NA	NA
UHGV-0138696_6	eggNOG-mapper	90371.CY43_01840	NA	NA
UHGV-0138696_6	Pfam	PF10834	NA	DUF2560
UHGV-0138696_6	Structural annotation	PF10834	NA	NA
UHGV-0138696_8	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0138696_8	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0138696_8	UniRef90	UniRef90_A0A4P6WRZ7	Lysis protein	NA
UHGV-0138696_8	eggNOG-mapper	399742.Ent638_2247	Bacteriophage Rz lysis protein	NA
UHGV-0138696_8	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0138696_8	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0138696_8	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0138696_9	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0138696_9	PHROG	phrog_7	endolysin	lysis
UHGV-0138696_9	UniRef90	UniRef90_A0A381G4L9	Lysozyme	NA
UHGV-0138696_9	eggNOG-mapper	716541.ECL_03572	lysozyme	NA
UHGV-0138696_9	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0138696_9	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0138696_9	HAMAP	MF_04110	Endolysin	NA
UHGV-0138696_9	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0138696_10	PHROG	phrog_20	holin	lysis
UHGV-0138696_10	UniRef90	UniRef90_A0A8F3QVU8	Phage holin family protein	NA
UHGV-0138696_10	eggNOG-mapper	716541.ECL_03573	Bacteriophage holin family HP1	NA
UHGV-0138696_10	Pfam	PF16080	Bacteriophage holin family HP1	Phage_holin_2_3
UHGV-0138696_11	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0138696_11	UniRef90	UniRef90_A0A3S7DD60	NA	NA
UHGV-0138696_11	eggNOG-mapper	1005994.GTGU_01479	NA	NA
UHGV-0138696_11	Pfam	PF06576	NA	DUF1133
UHGV-0138696_12	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138696_12	UniRef90	UniRef90_A0A3Q8DVF4	Protein NinG	NA
UHGV-0138696_12	eggNOG-mapper	1005994.GTGU_00291	NinG protein	NA
UHGV-0138696_12	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0138696_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0138696_12	Structural annotation	PF05766	NA	NA
UHGV-0138696_13	KOfam	K07314	pphB; serine/threonine protein phosphatase 2 [EC:3.1.3.16]	NA
UHGV-0138696_13	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138696_13	UniRef90	UniRef90_A0A7W3H657	Metallophosphoesterase	NA
UHGV-0138696_13	eggNOG-mapper	1147144.K7P6H8_9CAUD	phosphoprotein phosphatase activity	NA
UHGV-0138696_13	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0138696_13	Structural annotation	PF12850, MF_01443, NF007425, COG0622	NA	NA
UHGV-0138696_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0138696_14	UniRef90	UniRef90_UPI000A0D7F0B	YbcN family protein	NA
UHGV-0138696_14	eggNOG-mapper	693444.D782_2500	bubble DNA binding	NA
UHGV-0138696_14	NCBIFam	NF007281.0	hypothetical protein	NA
UHGV-0138696_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0138696_15	PHROG	phrog_1785	NA	unknown function
UHGV-0138696_15	eggNOG-mapper	173443.Q8HAG1_BPST6	NA	NA
UHGV-0138696_16	PHROG	phrog_12449	NA	unknown function
UHGV-0138696_16	UniRef90	UniRef90_UPI0015EA03F3	NA	NA
UHGV-0138696_16	eggNOG-mapper	1527519.A0A076G611_9CAUD	NA	NA
UHGV-0138696_17	PHROG	phrog_28696	NA	unknown function
UHGV-0138696_17	eggNOG-mapper	1348114.OM33_08605	NA	NA
UHGV-0138696_18	PHROG	phrog_250	NA	unknown function
UHGV-0138696_18	UniRef90	UniRef90_UPI0018916D78	ead/Ea22-like family protein	NA
UHGV-0138696_18	eggNOG-mapper	469008.B21_00708	Ead/Ea22-like protein	NA
UHGV-0138696_18	Pfam	PF13935	Ead/Ea22-like protein	Ead_Ea22
UHGV-0138696_18	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0138696_19	PHROG	phrog_492	NA	unknown function
UHGV-0138696_19	eggNOG-mapper	1498172.A0A0F6N6A6_9CAUD	NA	NA
UHGV-0138696_20	PHROG	phrog_16585	NA	unknown function
UHGV-0138696_21	PHROG	phrog_1687	MarR family transcrition regulator	transcription regulation
UHGV-0138696_21	UniRef90	UniRef90_A0A4U6HCA4	Transcriptional regulator	NA
UHGV-0138696_21	eggNOG-mapper	716541.ECL_03582	ROK family	NA
UHGV-0138696_21	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0138696_21	Pfam	PF09339	IclR helix-turn-helix domain	HTH_IclR
UHGV-0138696_21	COG	COG3888	Predicted transcriptional regulator	NA
UHGV-0138696_22	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0138696_22	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0138696_22	UniRef90	UniRef90_A0A509IMU6	DNA helicase	NA
UHGV-0138696_22	eggNOG-mapper	37554.Q9MCP7_BPHK7	DNA helicase activity	NA
UHGV-0138696_22	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0138696_22	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0138696_22	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0138696_23	PHROG	phrog_277	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0138696_23	UniRef90	UniRef90_UPI0015E98501	replication protein	NA
UHGV-0138696_23	eggNOG-mapper	754331.AEME01000001_gene3595	Bacteriophage replication protein O	NA
UHGV-0138696_23	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0138696_23	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-0138696_23	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0138696_23	Structural annotation	PF04492, TIGR01610, COG3388	NA	NA
UHGV-0138696_24	PHROG	phrog_1331	NA	unknown function
UHGV-0138696_24	UniRef90	UniRef90_A0A0M7DK93	Gp53	NA
UHGV-0138696_24	eggNOG-mapper	10761.Q716D4_BPSFV	NA	NA
UHGV-0138696_25	PHROG	phrog_191	CII-like transcriptional activator	transcription regulation
UHGV-0138696_25	UniRef90	UniRef90_UPI0018AC8978	CII family transcriptional regulator	NA
UHGV-0138696_25	eggNOG-mapper	10710.RPC2_LAMBD	Bacteriophage CII protein	NA
UHGV-0138696_25	Pfam	PF05269	Bacteriophage CII protein	Phage_CII
UHGV-0138696_25	Structural annotation	PF05269	NA	NA
UHGV-0138696_26	UniRef90	UniRef90_UPI001C6FFB0D	Cro/Cl family transcriptional regulator	NA
UHGV-0138696_26	eggNOG-mapper	1147157.K7PHM0_9CAUD	Cro	NA
UHGV-0138696_26	Pfam	PF09048	Cro	Cro
UHGV-0138696_26	Structural annotation	PF09048	NA	NA
UHGV-0138696_27	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0138696_27	PHROG	phrog_8558	NA	unknown function
UHGV-0138696_27	UniRef90	UniRef90_A0A509IRM5	Repressor	NA
UHGV-0138696_27	eggNOG-mapper	10710.RPC1_LAMBD	sequence-specific DNA binding	NA
UHGV-0138696_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138696_27	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0138696_27	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0138696_30	PHROG	phrog_3975	NA	unknown function
UHGV-0138696_30	eggNOG-mapper	1115512.EH105704_01_02700	NA	NA
UHGV-0138696_30	Structural annotation	PF10798, NF040640	NA	NA
UHGV-0138696_31	PHROG	phrog_271	anti-termination protein N-like	transcription regulation
UHGV-0138696_31	UniRef90	UniRef90_A0A7L6DS72	Antitermination protein	NA
UHGV-0138696_31	eggNOG-mapper	411464.DESPIG_00395	36-mer N-terminal peptide of the N protein (N36)	NA
UHGV-0138696_31	Pfam	PF11438	36-mer N-terminal peptide of the N protein (N36)	N36
UHGV-0138696_31	Structural annotation	PF11438	NA	NA
UHGV-0138696_33	eggNOG-mapper	1453496.AT03_13425	NA	NA
UHGV-0138696_34	PHROG	phrog_2201	NA	unknown function
UHGV-0138696_35	PHROG	phrog_6396	NA	unknown function
UHGV-0138696_35	eggNOG-mapper	906669.G8C7T3_9CAUD	NA	NA
UHGV-0138696_35	Structural annotation	PF08141	NA	NA
UHGV-0138696_36	PHROG	phrog_2055	Kil protein for bacterial septation inhibition	other
UHGV-0138696_36	UniRef90	UniRef90_A0A7W3D3J9	Host cell division inhibitory peptide Kil	NA
UHGV-0138696_36	eggNOG-mapper	10761.Q716E4_BPSFV	Bacteriophage lambda Kil protein	NA
UHGV-0138696_37	PHROG	phrog_7704	NA	unknown function
UHGV-0138696_37	UniRef90	UniRef90_UPI0018915E02	NA	NA
UHGV-0138696_37	eggNOG-mapper	406818.XBJ1_1178	NA	NA
UHGV-0138696_37	Pfam	PF04448	NA	DUF551
UHGV-0138696_37	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0138696_38	PHROG	phrog_1723	recombinase	other
UHGV-0138696_38	UniRef90	UniRef90_A0A0H3CPM1	Gp42	NA
UHGV-0138696_38	eggNOG-mapper	10761.Q716E6_BPSFV	NA	NA
UHGV-0138696_39	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0138696_39	UniRef90	UniRef90_A0A509J0U3	Single-stranded DNA-binding protein	NA
UHGV-0138696_39	eggNOG-mapper	1005994.GTGU_00274	ERF superfamily	NA
UHGV-0138696_39	Pfam	PF04404	ERF superfamily	ERF
UHGV-0138696_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0138696_39	Structural annotation	PF04404, MF_00984, TIGR00607, COG5055	NA	NA
UHGV-0138696_40	PHROG	phrog_11492	NA	unknown function
UHGV-0138696_40	UniRef90	UniRef90_A0A2X2S4G5	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0138696_40	eggNOG-mapper	716541.ECL_01293	NA	NA
UHGV-0138696_40	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0138696_40	Structural annotation	NF040595	NA	NA
UHGV-0138696_41	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0138696_41	UniRef90	UniRef90_UPI00110ED5CB	phage N-6-adenine-methyltransferase	NA
UHGV-0138696_41	eggNOG-mapper	630626.EBL_c22100	DNA methylase	NA
UHGV-0138696_41	PADLOC	oMTase_00010	orphan methyltransferase	RM
UHGV-0138696_41	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0138696_41	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0138696_41	Structural annotation	PF05869, MF_01872, TIGR01712, COG4123	NA	NA
UHGV-0138696_42	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0138696_43	PHROG	phrog_54	DksA-like zinc-finger protein	other
UHGV-0138696_43	UniRef90	UniRef90_UPI0018910B22	TraR/DksA C4-type zinc finger protein	NA
UHGV-0138696_43	eggNOG-mapper	911008.GLAD_00753	zinc ion binding	NA
UHGV-0138696_43	Pfam	PF01258	Prokaryotic dksA/traR C4-type zinc finger	zf-dskA_traR
UHGV-0138696_43	NCBIFam	TIGR02419.1	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	NA
UHGV-0138696_43	COG	COG1734	RNA polymerase-binding transcription factor DksA	NA
UHGV-0138696_43	Structural annotation	PF01258, MF_00926, TIGR02419, COG1734	NA	NA
UHGV-0138696_44	PHROG	phrog_444	NA	unknown function
UHGV-0138696_44	UniRef90	UniRef90_UPI0015EA2ACE	NA	NA
UHGV-0138696_44	eggNOG-mapper	1113547.A0A060DBF8_9CAUD	NA	NA
UHGV-0138696_44	Pfam	PF10765	Bacteriophage P22, NinX	Phage_P22_NinX
UHGV-0138696_44	Structural annotation	PF10765	NA	NA
UHGV-0138696_45	PHROG	phrog_285	NA	unknown function
UHGV-0138696_45	UniRef90	UniRef90_A0A168T2U6	NA	NA
UHGV-0138696_45	eggNOG-mapper	716541.ECL_01289	NA	NA
UHGV-0138696_45	Pfam	PF13973	NA	DUF4222
UHGV-0138696_45	Structural annotation	PF13973, NF037951, COG4481	NA	NA
UHGV-0138696_46	PHROG	phrog_10666	NA	unknown function
UHGV-0138696_46	eggNOG-mapper	637910.ROD_26271	NA	NA
UHGV-0138696_47	PHROG	phrog_24243	NA	unknown function
UHGV-0138696_47	UniRef90	UniRef90_A0A0D7LFK8	DNA-binding protein	NA
UHGV-0138696_47	eggNOG-mapper	469595.CSAG_02184	oxidized base lesion DNA N-glycosylase activity	NA
UHGV-0138696_47	COG	COG4047	N-glycosylase/DNA lyase (8-oxoguanine DNA glycosylase)	NA
UHGV-0138696_48	KOfam	K05875	tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor	NA
UHGV-0138696_48	PHROG	phrog_8572	NA	unknown function
UHGV-0138696_48	UniRef90	UniRef90_A0A155W8Q6	Chemotaxis protein	NA
UHGV-0138696_48	eggNOG-mapper	469595.CSAG_02187	Homologues of the ligand binding domain of Tar	NA
UHGV-0138696_48	Pfam	PF08376	Nitrate and nitrite sensing	NIT
UHGV-0138696_48	Pfam	PF00672	HAMP domain	HAMP
UHGV-0138696_48	Pfam	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain	MCPsignal
UHGV-0138696_48	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA