UHGV-0138708

Genome information

Genome length 40,133 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138708
vOTU ID	vOTU-009505
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_358167
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.25
Jumbo phage	No

Genome content
Genome length	40,133 bps
GC content	55.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.42%
Average CDS length	546.64 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138708_1	eggNOG-mapper	537013.CLOSTMETH_00989	Abi-like protein	NA
UHGV-0138708_1	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0138708_2	PHROG	phrog_608	holin	lysis
UHGV-0138708_2	UniRef90	UniRef90_UPI00046E80CD	phage holin, LLH family	NA
UHGV-0138708_2	eggNOG-mapper	1336234.JAGN01000004_gene510	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0138708_2	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0138708_2	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0138708_3	PHROG	phrog_918	NA	unknown function
UHGV-0138708_3	UniRef90	UniRef90_UPI00096A904F	NA	NA
UHGV-0138708_3	eggNOG-mapper	272626.lin0103	NA	NA
UHGV-0138708_3	Pfam	PF19791	NA	DUF6275
UHGV-0138708_3	Structural annotation	PF19791	NA	NA
UHGV-0138708_4	PHROG	phrog_937	hemolysin	other
UHGV-0138708_4	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0138708_5	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0138708_5	PHROG	phrog_894	endolysin	lysis
UHGV-0138708_5	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0138708_5	eggNOG-mapper	903814.ELI_0090	Peptidoglycan-binding domain 1 protein	NA
UHGV-0138708_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0138708_5	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0138708_5	COG	COG3108	NA	NA
UHGV-0138708_5	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0138708_9	Structural annotation	PF14686, PF21253, NF040788, COG2512	NA	NA
UHGV-0138708_10	PHROG	phrog_38044	NA	unknown function
UHGV-0138708_10	eggNOG-mapper	931626.Awo_c30920	COG NOG18825 non supervised orthologous group	NA
UHGV-0138708_13	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0138708_13	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0138708_14	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0138708_14	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0138708_14	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0138708_15	PHROG	phrog_1194	NA	unknown function
UHGV-0138708_15	eggNOG-mapper	673837.D2IZU9_9CAUD	NA	NA
UHGV-0138708_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0138708_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0138708_16	eggNOG-mapper	1121871.AUAT01000030_gene1035	Phage tail tape measure protein	NA
UHGV-0138708_16	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0138708_17	Structural annotation	PF12691	NA	NA
UHGV-0138708_19	eggNOG-mapper	1414720.CBYM010000002_gene568	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0138708_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-0138708_20	eggNOG-mapper	1096930.L284_19115	head-tail adaptor	NA
UHGV-0138708_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0138708_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0138708_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0138708_22	Structural annotation	PF11836	NA	NA
UHGV-0138708_23	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0138708_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0138708_25	UniRef90	UniRef90_UPI001AE094BA	phage major capsid protein	NA
UHGV-0138708_25	eggNOG-mapper	198094.BA_3784	Phage capsid family	NA
UHGV-0138708_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0138708_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0138708_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0138708_25	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0138708_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0138708_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0138708_26	UniRef90	UniRef90_UPI001ADF09D6	Clp protease ClpP	NA
UHGV-0138708_26	eggNOG-mapper	1121864.OMO_01325	Clp protease	NA
UHGV-0138708_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0138708_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0138708_26	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0138708_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0138708_27	UniRef90	UniRef90_UPI001AE072D2	phage portal protein	NA
UHGV-0138708_27	eggNOG-mapper	693746.OBV_20020	Phage portal protein	NA
UHGV-0138708_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0138708_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0138708_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0138708_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0138708_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0138708_29	UniRef90	UniRef90_A0A2U1BC08	Phage terminase large subunit-like protein	NA
UHGV-0138708_29	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0138708_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0138708_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0138708_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0138708_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0138708_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0138708_30	UniRef90	UniRef90_A0A0U4WKG5	Phage terminase, small subunit	NA
UHGV-0138708_30	eggNOG-mapper	411459.RUMOBE_01738	phage terminase, small subunit	NA
UHGV-0138708_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0138708_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0138708_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0138708_31	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138708_31	UniRef90	UniRef90_UPI001C3BDB2A	HNH endonuclease	NA
UHGV-0138708_31	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0138708_31	AcrCatalog	cluster_19695	NA	NA
UHGV-0138708_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0138708_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0138708_31	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0138708_32	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0138708_32	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0138708_32	Structural annotation	PF14205	NA	NA
UHGV-0138708_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0138708_33	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0138708_33	eggNOG-mapper	1203606.HMPREF1526_01330	NA	NA
UHGV-0138708_33	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0138708_42	PHROG	phrog_8684	NA	unknown function
UHGV-0138708_42	UniRef90	UniRef90_D7NFS0	Prophage Lp2 protein 26	NA
UHGV-0138708_42	eggNOG-mapper	563008.HMPREF0665_02419	YopX protein	NA
UHGV-0138708_42	Pfam	PF09643	YopX protein	YopX
UHGV-0138708_42	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0138708_42	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0138708_44	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0138708_44	PHROG	phrog_27290	NA	unknown function
UHGV-0138708_44	UniRef90	UniRef90_R5EBB0	ParB domain-containing protein	NA
UHGV-0138708_44	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0138708_44	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0138708_44	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0138708_44	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0138708_45	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0138708_45	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0138708_45	UniRef90	UniRef90_R5EEH2	CobQ/CobB/MinD/ParA nucleotide binding domain protein	NA
UHGV-0138708_45	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0138708_45	Pfam	PF13614	AAA domain	AAA_31
UHGV-0138708_45	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0138708_45	Structural annotation	PF13614, MF_00533, NF041546, COG1192	NA	NA
UHGV-0138708_46	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0138708_46	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0138708_46	UniRef90	UniRef90_UPI001D0205B9	AAA family ATPase	NA
UHGV-0138708_46	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0138708_46	Pfam	PF13614	AAA domain	AAA_31
UHGV-0138708_46	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0138708_47	eggNOG-mapper	1408324.JNJK01000014_gene1982	NA	NA
UHGV-0138708_48	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0138708_48	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0138708_48	UniRef90	UniRef90_R5ENX5	DNA helicase	NA
UHGV-0138708_48	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0138708_48	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0138708_48	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0138708_48	COG	COG0305	Replicative DNA helicase	NA
UHGV-0138708_48	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0138708_49	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0138708_49	UniRef90	UniRef90_UPI001369664B	helix-turn-helix domain-containing protein	NA
UHGV-0138708_49	eggNOG-mapper	458233.MCCL_1540	Helix-turn-helix domain	NA
UHGV-0138708_49	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0138708_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0138708_49	Structural annotation	PF02002, MF_01909, NF040939, COG5529	NA	NA
UHGV-0138708_50	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0138708_50	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0138708_50	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0138708_53	PHROG	phrog_3306	NA	unknown function
UHGV-0138708_53	UniRef90	UniRef90_UPI000CF972A3	NA	NA
UHGV-0138708_53	eggNOG-mapper	500633.CLOHIR_01403	NA	NA
UHGV-0138708_53	AcrCatalog	cluster_5078	NA	NA
UHGV-0138708_53	Pfam	PF19670	NA	DUF6173
UHGV-0138708_53	Structural annotation	PF19670	NA	NA
UHGV-0138708_55	UniRef90	UniRef90_C0D708	DNA-binding helix-turn-helix protein	NA
UHGV-0138708_55	eggNOG-mapper	1235800.C819_02266	Helix-turn-helix XRE-family like proteins	NA
UHGV-0138708_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0138708_56	PHROG	phrog_37629	NA	unknown function
UHGV-0138708_56	eggNOG-mapper	742741.HMPREF9475_00398	NA	NA
UHGV-0138708_57	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0138708_57	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0138708_57	UniRef90	UniRef90_A0A564UIL3	HicB-like domain-containing protein	NA
UHGV-0138708_57	eggNOG-mapper	1514668.JOOA01000001_gene181	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0138708_57	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0138708_57	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0138708_57	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0138708_58	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0138708_58	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0138708_58	UniRef90	UniRef90_UPI00130EBAF4	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0138708_58	eggNOG-mapper	1121887.AUDK01000033_gene1450	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0138708_58	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0138708_58	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0138708_60	KOfam	K14059	int; integrase	NA
UHGV-0138708_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0138708_60	UniRef90	UniRef90_A0A0M2NGB2	DNA integration/recombination/inversion protein	NA
UHGV-0138708_60	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0138708_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0138708_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0138708_60	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0138708_61	PHROG	phrog_38239	NA	unknown function
UHGV-0138708_61	UniRef90	UniRef90_R5EF16	Ferredoxin:thioredoxin reductase	NA
UHGV-0138708_61	eggNOG-mapper	1160721.RBI_I01767	Ferredoxin thioredoxin reductase catalytic beta chain	NA
UHGV-0138708_61	Pfam	PF02943	Ferredoxin thioredoxin reductase catalytic beta chain	FeThRed_B
UHGV-0138708_61	Structural annotation	NF041072, COG4802	NA	NA
UHGV-0138708_62	PHROG	phrog_289	GTP-binding domain	other
UHGV-0138708_62	UniRef90	UniRef90_A0A3B8NV29	NA	NA
UHGV-0138708_62	eggNOG-mapper	1378168.N510_01588	NA	NA
UHGV-0138708_62	Pfam	PF06908	YspA SLOG family	YpsA
UHGV-0138708_62	COG	COG4474	NA	NA
UHGV-0138708_62	Structural annotation	PF06908, MF_01575, NF010181, COG4474	NA	NA
UHGV-0138708_63	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0138708_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0138708_63	UniRef90	UniRef90_R5EBH7	DNA-binding helix-turn-helix protein	NA
UHGV-0138708_63	eggNOG-mapper	1378168.N510_01587	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0138708_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138708_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0138708_63	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0138708_64	KOfam	K03327	TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family	NA
UHGV-0138708_64	PHROG	phrog_6241	NA	unknown function
UHGV-0138708_64	UniRef90	UniRef90_A0A1C6KYZ8	Multidrug-efflux transporter	NA
UHGV-0138708_64	eggNOG-mapper	1235797.C816_01022	MatE	NA
UHGV-0138708_64	Pfam	PF01554	MatE	MatE
UHGV-0138708_64	NCBIFam	TIGR00797.1	MATE family efflux transporter	NA
UHGV-0138708_64	COG	COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	NA
UHGV-0138708_64	Structural annotation	PF03023, MF_00400, NF041801, COG0534	NA	NA
UHGV-0138708_65	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0138708_65	PHROG	phrog_7158	NA	unknown function
UHGV-0138708_65	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0138708_66	PHROG	phrog_7158	NA	unknown function