UHGV-0138728

Genome information

Genome length 73,990 bps

CDS count 100

Completeness 99.90% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138728
vOTU ID	vOTU-008478
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_342020
BioSample	SAMN02333947
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.06
Jumbo phage	No

Genome content
Genome length	73,990 bps
GC content	46.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	100
CDS density	89.04%
Average CDS length	660.99 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138728_8	PHROG	phrog_10066	NA	unknown function
UHGV-0138728_9	PHROG	phrog_872	NA	unknown function
UHGV-0138728_9	UniRef90	UniRef90_UPI001F1A0D8B	NA	NA
UHGV-0138728_9	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0138728_9	Pfam	PF11195	NA	DUF2829
UHGV-0138728_9	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0138728_9	Structural annotation	PF11195	NA	NA
UHGV-0138728_11	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0138728_11	PHROG	phrog_200	lipoprotein	other
UHGV-0138728_11	UniRef90	UniRef90_A0A3R6JWU3	PHB domain-containing protein	NA
UHGV-0138728_11	eggNOG-mapper	1122621.ATZA01000001_gene1899	stress-induced mitochondrial fusion	NA
UHGV-0138728_11	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0138728_11	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0138728_11	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0138728_14	Structural annotation	PF20012	NA	NA
UHGV-0138728_15	Structural annotation	PF17600	NA	NA
UHGV-0138728_19	UniRef90	UniRef90_A0A7H1MQK0	Fructan hydrolase	NA
UHGV-0138728_19	eggNOG-mapper	483215.BACFIN_05621	NA	NA
UHGV-0138728_20	Structural annotation	PF17457	NA	NA
UHGV-0138728_22	PHROG	phrog_8684	NA	unknown function
UHGV-0138728_22	UniRef90	UniRef90_UPI001F45D98B	YopX family protein	NA
UHGV-0138728_22	eggNOG-mapper	742767.HMPREF9456_02399	YopX protein	NA
UHGV-0138728_22	Pfam	PF09643	YopX protein	YopX
UHGV-0138728_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0138728_24	Structural annotation	PF09560	NA	NA
UHGV-0138728_28	Structural annotation	PF14120	NA	NA
UHGV-0138728_31	PHROG	phrog_8470	NA	unknown function
UHGV-0138728_31	UniRef90	UniRef90_UPI001B8CE2D4	PcfJ domain-containing protein	NA
UHGV-0138728_31	eggNOG-mapper	879243.Poras_1549	PcfJ-like protein	NA
UHGV-0138728_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0138728_31	Structural annotation	PF14284	NA	NA
UHGV-0138728_32	PHROG	phrog_7445	NA	unknown function
UHGV-0138728_32	UniRef90	UniRef90_UPI001BD0AC72	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0138728_32	eggNOG-mapper	470145.BACCOP_01610	NA	NA
UHGV-0138728_32	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0138728_32	Structural annotation	PF14058	NA	NA
UHGV-0138728_34	UniRef90	UniRef90_UPI001F3CE8CE	DpnD/PcfM family protein	NA
UHGV-0138728_34	eggNOG-mapper	170187.SP_1849	defense response	NA
UHGV-0138728_34	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-0138728_34	Structural annotation	PF14207	NA	NA
UHGV-0138728_40	UniRef90	UniRef90_UPI001F1D17D3	helix-turn-helix domain-containing protein	NA
UHGV-0138728_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138728_40	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0138728_41	eggNOG-mapper	619693.HMPREF6745_1672	NA	NA
UHGV-0138728_44	KOfam	K05811	yfiM; putative lipoprotein	NA
UHGV-0138728_44	PHROG	phrog_26616	lipoprotein	other
UHGV-0138728_44	Structural annotation	PF10043, NF008028, COG5544	NA	NA
UHGV-0138728_45	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0138728_48	PHROG	phrog_10691	NA	unknown function
UHGV-0138728_48	UniRef90	UniRef90_A0A415VE78	Helicase ATP-binding domain-containing protein	NA
UHGV-0138728_48	eggNOG-mapper	1121447.JONL01000012_gene3405	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	NA
UHGV-0138728_48	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0138728_48	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0138728_48	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0138728_48	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0138728_48	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0138728_48	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0138728_49	PHROG	phrog_27246	NA	unknown function
UHGV-0138728_49	eggNOG-mapper	563031.HMPREF0666_01149	NA	NA
UHGV-0138728_51	PHROG	phrog_32516	NA	unknown function
UHGV-0138728_51	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-0138728_51	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0138728_52	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0138728_52	UniRef90	UniRef90_UPI00192482D4	terminase	NA
UHGV-0138728_52	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0138728_52	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0138728_52	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0138728_55	Structural annotation	PF02368	NA	NA
UHGV-0138728_58	PHROG	phrog_156	portal protein	head and packaging
UHGV-0138728_58	eggNOG-mapper	679191.HMPREF9018_0455	NA	NA
UHGV-0138728_58	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0138728_59	PHROG	phrog_22323	NA	unknown function
UHGV-0138728_59	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-0138728_60	eggNOG-mapper	742817.HMPREF9449_01785	NA	NA
UHGV-0138728_60	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0138728_62	Structural annotation	PF17212	NA	NA
UHGV-0138728_63	Structural annotation	PF17994	NA	NA
UHGV-0138728_64	PHROG	phrog_892	tail fiber protein	tail
UHGV-0138728_65	PHROG	phrog_17273	NA	unknown function
UHGV-0138728_65	Pfam	PF03382	NA	DUF285
UHGV-0138728_65	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0138728_65	Structural annotation	PF03382	NA	NA
UHGV-0138728_67	eggNOG-mapper	596152.DesU5LDRAFT_2368	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0138728_67	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0138728_68	eggNOG-mapper	1122621.ATZA01000050_gene2920	NA	NA
UHGV-0138728_70	PHROG	phrog_38431	NA	unknown function
UHGV-0138728_70	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0138728_70	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-0138728_72	PHROG	phrog_28898	NA	unknown function
UHGV-0138728_72	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0138728_72	Structural annotation	PF10781	NA	NA
UHGV-0138728_73	PHROG	phrog_31654	NA	unknown function
UHGV-0138728_73	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0138728_74	PHROG	phrog_16490	NA	unknown function
UHGV-0138728_74	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0138728_74	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0138728_75	UniRef90	UniRef90_A0A8F1B604	Excisionase, terminase small subunit	NA
UHGV-0138728_75	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0138728_76	eggNOG-mapper	762982.HMPREF9442_01199	NA	NA
UHGV-0138728_77	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0138728_77	PHROG	phrog_181	endolysin	lysis
UHGV-0138728_77	UniRef90	UniRef90_A0A6A7U2A4	Glycoside hydrolase family 19 protein	NA
UHGV-0138728_77	eggNOG-mapper	1441629.PCH70_35190	hmm pf00182	NA
UHGV-0138728_77	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0138728_77	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0138728_77	Structural annotation	PF00182, COG3179	NA	NA
UHGV-0138728_78	PHROG	phrog_15037	NA	unknown function
UHGV-0138728_78	UniRef90	UniRef90_UPI001C46F9DA	phage holin family protein	NA
UHGV-0138728_78	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0138728_78	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0138728_79	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0138728_79	PHROG	phrog_1	integrase	integration and excision
UHGV-0138728_79	UniRef90	UniRef90_UPI001F444C6F	site-specific integrase	NA
UHGV-0138728_79	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0138728_79	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0138728_79	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0138728_79	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0138728_79	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0138728_79	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0138728_81	UniRef90	UniRef90_UPI001F3A91FA	helix-turn-helix domain-containing protein	NA
UHGV-0138728_81	eggNOG-mapper	1035197.HMPREF9999_00116	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0138728_81	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138728_81	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0138728_81	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0138728_82	PHROG	phrog_16858	NA	unknown function
UHGV-0138728_82	Structural annotation	PF08587	NA	NA
UHGV-0138728_85	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0138728_85	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138728_85	UniRef90	UniRef90_UPI001F328015	AAA family ATPase	NA
UHGV-0138728_85	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0138728_85	PADLOC	AAA_15	NA	NA
UHGV-0138728_85	Pfam	PF13476	AAA domain	AAA_23
UHGV-0138728_85	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0138728_85	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0138728_86	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0138728_86	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0138728_86	UniRef90	UniRef90_A0A3R6PLT7	Recombinase	NA
UHGV-0138728_86	eggNOG-mapper	445970.ALIPUT_02693	Recombinase, phage RecT family	NA
UHGV-0138728_86	Pfam	PF03837	RecT family	RecT
UHGV-0138728_86	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0138728_86	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0138728_86	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0138728_87	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0138728_87	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0138728_87	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-0138728_87	eggNOG-mapper	1235788.C802_00050	Metallo-beta-lactamase superfamily	NA
UHGV-0138728_87	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0138728_87	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-0138728_89	Structural annotation	NF001644	NA	NA
UHGV-0138728_91	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0138728_92	UniRef90	UniRef90_UPI001F322840	NA	NA
UHGV-0138728_92	eggNOG-mapper	537011.PREVCOP_03857	NA	NA
UHGV-0138728_92	Pfam	PF11325	NA	DUF3127
UHGV-0138728_92	Structural annotation	PF11325, MF_00720, NF005674, COG2965	NA	NA
UHGV-0138728_93	PHROG	phrog_19415	NA	unknown function
UHGV-0138728_93	UniRef90	UniRef90_A0A413BUX7	RepL domain-containing protein	NA
UHGV-0138728_93	eggNOG-mapper	294631.Q5ZGB4_9CAUD	NA	NA
UHGV-0138728_93	Structural annotation	PF20024, MF_01819, NF041413, COG1959	NA	NA
UHGV-0138728_94	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0138728_94	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0138728_94	UniRef90	UniRef90_A0A1M6ES02	DNA replication protein DnaC	NA
UHGV-0138728_94	eggNOG-mapper	1236504.HMPREF2132_11435	NA	NA
UHGV-0138728_94	Pfam	PF20720	Novel STAND NTPase 3	nSTAND3
UHGV-0138728_94	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA