UHGV-0138775

Genome information

Genome length 36,391 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138775
vOTU ID	vOTU-061183
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_383254
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.42
Jumbo phage	No

Genome content
Genome length	36,391 bps
GC content	37.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.33%
Average CDS length	599.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138775_1	UniRef90	UniRef90_UPI001570CAF6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0138775_1	eggNOG-mapper	592031.GCWU000322_00057	NA	NA
UHGV-0138775_1	Pfam	PF20573	NA	DUF6782
UHGV-0138775_1	Structural annotation	PF13058, MF_00745	NA	NA
UHGV-0138775_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0138775_2	PHROG	phrog_435	endolysin	lysis
UHGV-0138775_2	UniRef90	UniRef90_A0A6N2UUF0	Autolysin	NA
UHGV-0138775_2	eggNOG-mapper	537007.BLAHAN_05253	Ami_3	NA
UHGV-0138775_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0138775_2	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0138775_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0138775_2	Structural annotation	PF01520, PF19127, MF_00417, TIGR02883, TIGR04035, COG0860	NA	NA
UHGV-0138775_3	PHROG	phrog_443	holin	lysis
UHGV-0138775_3	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0138775_3	eggNOG-mapper	411463.EUBVEN_02210	Putative lactococcus lactis phage r1t holin	NA
UHGV-0138775_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0138775_3	Structural annotation	PF16945	NA	NA
UHGV-0138775_5	PHROG	phrog_2310	NA	unknown function
UHGV-0138775_5	eggNOG-mapper	931276.Cspa_c27110	NA	NA
UHGV-0138775_6	PHROG	phrog_16164	NA	unknown function
UHGV-0138775_6	eggNOG-mapper	457412.RSAG_01112	NA	NA
UHGV-0138775_7	PHROG	phrog_16164	NA	unknown function
UHGV-0138775_7	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0138775_7	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0138775_9	eggNOG-mapper	537007.BLAHAN_05250	NA	NA
UHGV-0138775_10	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0138775_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0138775_11	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0138775_11	PHROG	phrog_14030	NA	unknown function
UHGV-0138775_11	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-0138775_11	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0138775_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0138775_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0138775_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0138775_11	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0138775_12	PHROG	phrog_13289	tail protein	tail
UHGV-0138775_12	UniRef90	UniRef90_A0A844KBR1	Prophage_tail domain-containing protein	NA
UHGV-0138775_12	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0138775_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0138775_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0138775_12	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0138775_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0138775_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0138775_13	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-0138775_13	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0138775_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0138775_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0138775_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0138775_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0138775_14	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0138775_14	UniRef90	UniRef90_A0A7G5N113	Phage tail tape measure protein	NA
UHGV-0138775_14	eggNOG-mapper	387909.A0EX03_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0138775_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0138775_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0138775_17	PHROG	phrog_88	major tail protein	tail
UHGV-0138775_17	UniRef90	UniRef90_A0A3E3JYD8	Phage tail protein	NA
UHGV-0138775_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0138775_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0138775_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0138775_18	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0138775_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0138775_18	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0138775_19	PHROG	phrog_78	tail terminator	connector
UHGV-0138775_19	Structural annotation	PF05657	NA	NA
UHGV-0138775_20	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-0138775_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0138775_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0138775_22	UniRef90	UniRef90_A0A3E3JY53	Phage major capsid protein	NA
UHGV-0138775_22	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0138775_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0138775_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0138775_22	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0138775_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0138775_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0138775_23	UniRef90	UniRef90_A0A3E3JYT5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0138775_23	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0138775_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0138775_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0138775_23	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0138775_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0138775_24	UniRef90	UniRef90_A0A3E3JY21	Phage portal protein	NA
UHGV-0138775_24	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0138775_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0138775_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0138775_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0138775_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0138775_25	UniRef90	UniRef90_A0A3E3JY25	Terminase large subunit	NA
UHGV-0138775_25	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0138775_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0138775_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0138775_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0138775_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0138775_26	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0138775_26	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0138775_26	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0138775_26	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0138775_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0138775_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138775_27	UniRef90	UniRef90_UPI00164A3ACF	HNH endonuclease	NA
UHGV-0138775_27	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0138775_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0138775_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0138775_28	PHROG	phrog_11237	NA	unknown function
UHGV-0138775_28	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0138775_29	PHROG	phrog_6568	NA	unknown function
UHGV-0138775_31	PHROG	phrog_15198	NA	unknown function
UHGV-0138775_31	UniRef90	UniRef90_UPI001185FC09	NA	NA
UHGV-0138775_31	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0138775_31	Pfam	PF04448	NA	DUF551
UHGV-0138775_32	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0138775_32	UniRef90	UniRef90_UPI001BC83C03	ASCH domain-containing protein	NA
UHGV-0138775_32	eggNOG-mapper	1499683.CCFF01000005_gene42	NA	NA
UHGV-0138775_32	Pfam	PF12961	NA	DUF3850
UHGV-0138775_32	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0138775_34	PHROG	phrog_8684	NA	unknown function
UHGV-0138775_34	UniRef90	UniRef90_S2Z040	YopX domain-containing protein	NA
UHGV-0138775_34	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0138775_34	Pfam	PF09643	YopX protein	YopX
UHGV-0138775_34	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0138775_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0138775_35	PHROG	phrog_37410	NA	unknown function
UHGV-0138775_35	Structural annotation	PF08169, NF037951, COG1918	NA	NA
UHGV-0138775_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0138775_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0138775_36	UniRef90	UniRef90_A0A8B3BSU1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0138775_36	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0138775_36	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0138775_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0138775_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0138775_36	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0138775_37	Structural annotation	PF17399	NA	NA
UHGV-0138775_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0138775_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0138775_39	UniRef90	UniRef90_F3AAS3	Single-stranded DNA-binding protein	NA
UHGV-0138775_39	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-0138775_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0138775_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0138775_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0138775_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0138775_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0138775_40	PHROG	phrog_15077	NA	unknown function
UHGV-0138775_40	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0138775_40	Structural annotation	NF038070	NA	NA
UHGV-0138775_41	PHROG	phrog_7566	NA	unknown function
UHGV-0138775_41	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-0138775_42	eggNOG-mapper	1235800.C819_00510	NA	NA
UHGV-0138775_43	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0138775_43	UniRef90	UniRef90_F3AAS5	RNase H type-1 domain-containing protein	NA
UHGV-0138775_43	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0138775_43	Pfam	PF00075	RNase H	RNase_H
UHGV-0138775_43	COG	COG0328	Ribonuclease HI	NA
UHGV-0138775_43	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0138775_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0138775_44	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-0138775_44	Structural annotation	PF01446	NA	NA
UHGV-0138775_46	PHROG	phrog_30860	NA	unknown function
UHGV-0138775_49	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0138775_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0138775_51	UniRef90	UniRef90_A0A8G1WWG8	XRE family transcriptional regulator	NA
UHGV-0138775_51	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0138775_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138775_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0138775_51	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0138775_52	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0138775_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0138775_52	UniRef90	UniRef90_UPI0004853073	helix-turn-helix transcriptional regulator	NA
UHGV-0138775_52	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0138775_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138775_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0138775_52	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0138775_53	PHROG	phrog_87	metallo-protease	other
UHGV-0138775_53	UniRef90	UniRef90_R6NRS1	Peptidase_M78 domain-containing protein	NA
UHGV-0138775_53	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0138775_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0138775_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0138775_53	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0138775_54	KOfam	K03763	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	NA
UHGV-0138775_54	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0138775_54	UniRef90	UniRef90_A0A855HAM1	BRCT domain-containing protein	NA
UHGV-0138775_54	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0138775_54	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0138775_54	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0138775_54	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0138775_54	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0138775_54	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0138775_54	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0138775_55	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0138775_55	UniRef90	UniRef90_A0A415G6W4	Abi family protein	NA
UHGV-0138775_55	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-0138775_55	PADLOC	AbiD	AbiD	Abi
UHGV-0138775_55	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0138775_55	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0138775_55	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0138775_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0138775_56	PHROG	phrog_95	integrase	integration and excision
UHGV-0138775_56	UniRef90	UniRef90_A0A1Y3SLY0	Recombinase family protein	NA
UHGV-0138775_56	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0138775_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0138775_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-0138775_56	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0138775_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0138775_56	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA