UHGV-0138836

Genome information

Genome length 43,481 bps

CDS count 57

Completeness 76.82% (medium-quality)

geNomad score 0.9554

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138836
vOTU ID	vOTU-015391
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_387161
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	76.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9554
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.17
Jumbo phage	No

Genome content
Genome length	43,481 bps
GC content	38.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.47%
Average CDS length	685.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138836_1	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0138836_1	UniRef90	UniRef90_R6URI6	HTH cro/C1-type domain-containing protein	NA
UHGV-0138836_1	eggNOG-mapper	1280706.AUJE01000041_gene881	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0138836_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0138836_1	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0138836_1	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0138836_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0138836_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0138836_2	UniRef90	UniRef90_A0A373KZW5	LexA family transcriptional regulator	NA
UHGV-0138836_2	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0138836_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0138836_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138836_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0138836_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0138836_2	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF041951, COG1396, COG1974	NA	NA
UHGV-0138836_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0138836_3	UniRef90	UniRef90_A0A1C6I6F2	Anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-0138836_3	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0138836_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138836_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0138836_3	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0138836_5	Structural annotation	PF10735	NA	NA
UHGV-0138836_6	PHROG	phrog_310	transposase	integration and excision
UHGV-0138836_6	UniRef90	UniRef90_A0A413QHZ6	MerR family transcriptional regulator	NA
UHGV-0138836_6	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-0138836_6	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0138836_6	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0138836_6	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0138836_6	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0138836_6	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0138836_7	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0138836_7	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0138836_7	UniRef90	UniRef90_A0A413QHD1	AAA domain-containing protein	NA
UHGV-0138836_7	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-0138836_7	Pfam	PF13401	AAA domain	AAA_22
UHGV-0138836_7	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0138836_7	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0138836_9	PHROG	phrog_5671	NA	unknown function
UHGV-0138836_9	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-0138836_11	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0138836_11	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0138836_11	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0138836_11	eggNOG-mapper	742733.HMPREF9469_02890	toxin-antitoxin pair type II binding	NA
UHGV-0138836_11	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0138836_11	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0138836_11	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0138836_12	eggNOG-mapper	645991.Sgly_0760	NA	NA
UHGV-0138836_13	PHROG	phrog_286	NA	unknown function
UHGV-0138836_13	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-0138836_13	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-0138836_13	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0138836_13	Structural annotation	PF06252	NA	NA
UHGV-0138836_14	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0138836_14	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-0138836_14	eggNOG-mapper	411483.FAEPRAA2165_03398	Mor transcription activator family	NA
UHGV-0138836_14	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0138836_14	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0138836_14	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0138836_15	eggNOG-mapper	663278.Ethha_0085	NA	NA
UHGV-0138836_16	PHROG	phrog_25462	NA	unknown function
UHGV-0138836_16	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-0138836_16	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0138836_16	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0138836_17	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0138836_17	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-0138836_17	eggNOG-mapper	742733.HMPREF9469_02884	NA	NA
UHGV-0138836_17	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0138836_17	Structural annotation	PF11985	NA	NA
UHGV-0138836_18	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0138836_18	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0138836_18	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-0138836_18	eggNOG-mapper	1304880.JAGB01000001_gene953	antitermination protein NusG	NA
UHGV-0138836_18	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0138836_18	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0138836_18	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0138836_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0138836_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0138836_20	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-0138836_20	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0138836_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0138836_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0138836_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0138836_20	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0138836_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0138836_21	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-0138836_21	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0138836_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0138836_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0138836_22	UniRef90	UniRef90_A0A1C6I5M7	Phage minor capsid protein 2	NA
UHGV-0138836_22	eggNOG-mapper	641112.ACOK01000073_gene2890	NA	NA
UHGV-0138836_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0138836_22	COG	COG2369	NA	NA
UHGV-0138836_22	Structural annotation	PF06152	NA	NA
UHGV-0138836_24	PHROG	phrog_419	NA	unknown function
UHGV-0138836_24	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-0138836_24	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0138836_24	Pfam	PF14083	PGDYG protein	PGDYG
UHGV-0138836_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0138836_25	UniRef90	UniRef90_UPI001967FAB3	phage scaffolding protein	NA
UHGV-0138836_25	eggNOG-mapper	1123511.KB905868_gene182	Phage minor structural protein GP20	NA
UHGV-0138836_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0138836_25	Structural annotation	PF06810	NA	NA
UHGV-0138836_26	PHROG	phrog_212	major head protein	head and packaging
UHGV-0138836_26	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-0138836_26	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0138836_26	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0138836_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0138836_27	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0138836_28	PHROG	phrog_3366	NA	unknown function
UHGV-0138836_28	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-0138836_28	Pfam	PF20536	NA	DUF6751
UHGV-0138836_28	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0138836_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0138836_29	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-0138836_29	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0138836_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0138836_29	Structural annotation	PF11114	NA	NA
UHGV-0138836_30	PHROG	phrog_3266	tail completion	connector
UHGV-0138836_30	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-0138836_30	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-0138836_30	Structural annotation	PF12691	NA	NA
UHGV-0138836_31	PHROG	phrog_3099	NA	unknown function
UHGV-0138836_31	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0138836_31	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0138836_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0138836_32	PHROG	phrog_4450	NA	unknown function
UHGV-0138836_32	UniRef90	UniRef90_A0A373KZ30	AP endonuclease	NA
UHGV-0138836_32	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0138836_32	Pfam	PF20378	NA	DUF6673
UHGV-0138836_32	Structural annotation	PF20378	NA	NA
UHGV-0138836_33	PHROG	phrog_706	NA	unknown function
UHGV-0138836_33	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-0138836_33	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0138836_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0138836_33	Structural annotation	PF06854	NA	NA
UHGV-0138836_34	PHROG	phrog_37750	NA	unknown function
UHGV-0138836_34	UniRef90	UniRef90_A0A1G4WVI6	Beta-lactamase inhibitor (BLIP)	NA
UHGV-0138836_34	eggNOG-mapper	1280390.CBQR020000086_gene1875	NA	NA
UHGV-0138836_35	PHROG	phrog_19074	NA	unknown function
UHGV-0138836_35	UniRef90	UniRef90_A0A373L0L9	Phage tail tape measure protein	NA
UHGV-0138836_35	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0138836_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0138836_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0138836_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0138836_35	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0138836_36	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-0138836_36	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-0138836_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0138836_36	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0138836_37	PHROG	phrog_18110	NA	unknown function
UHGV-0138836_37	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-0138836_37	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0138836_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0138836_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0138836_37	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0138836_37	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0138836_39	PHROG	phrog_11105	NA	unknown function
UHGV-0138836_40	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0138836_40	Structural annotation	PF10651, PF01095	NA	NA
UHGV-0138836_41	PHROG	phrog_4105	NA	unknown function
UHGV-0138836_41	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-0138836_42	PHROG	phrog_881	holin	lysis
UHGV-0138836_42	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0138836_42	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0138836_42	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0138836_42	Structural annotation	PF16938	NA	NA
UHGV-0138836_43	PHROG	phrog_21825	endolysin	lysis
UHGV-0138836_43	UniRef90	UniRef90_A0A2N0UI19	Putative peptidoglycan binding domain protein	NA
UHGV-0138836_43	eggNOG-mapper	445971.ANASTE_00092	CHAP domain	NA
UHGV-0138836_43	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0138836_43	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0138836_43	Structural annotation	PF01471, TIGR02594, NF038080, COG3409, COG3942	NA	NA
UHGV-0138836_44	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0138836_44	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0138836_44	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0138836_44	eggNOG-mapper	411902.CLOBOL_03426	COG COG0338 Site-specific DNA methylase	NA
UHGV-0138836_44	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0138836_44	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0138836_44	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0138836_44	COG	COG0338	DNA-adenine methylase	NA
UHGV-0138836_44	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0138836_45	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0138836_45	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0138836_45	UniRef90	UniRef90_A0A413QHG2	XRE family transcriptional regulator	NA
UHGV-0138836_45	eggNOG-mapper	411471.SUBVAR_07446	helix-turn-helix	NA
UHGV-0138836_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0138836_45	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0138836_46	UniRef90	UniRef90_UPI0015F455B4	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0138836_48	eggNOG-mapper	1131462.DCF50_p1790	Membrane	NA
UHGV-0138836_48	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0138836_49	PHROG	phrog_6058	NA	unknown function
UHGV-0138836_49	eggNOG-mapper	663278.Ethha_1800	NA	NA
UHGV-0138836_50	UniRef90	UniRef90_A0A3D2HV65	HTH cro/C1-type domain-containing protein	NA
UHGV-0138836_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138836_50	Structural annotation	PF13560, TIGR00270, COG3655	NA	NA
UHGV-0138836_51	eggNOG-mapper	545243.BAEV01000004_gene840	NA	NA
UHGV-0138836_52	PHROG	phrog_20942	NA	unknown function
UHGV-0138836_52	UniRef90	UniRef90_A0A416W4W7	Nucleotidyltransferase	NA
UHGV-0138836_52	eggNOG-mapper	931626.Awo_c19770	NA	NA
UHGV-0138836_52	PADLOC	Cyclase_00020	oligonucleotide-cyclase	CBASS
UHGV-0138836_52	Pfam	PF18144	Second Messenger Oligonucleotide or Dinucleotide Synthetase domain	SMODS
UHGV-0138836_53	UniRef90	UniRef90_UPI001D1399A5	SEC-C domain-containing protein	NA
UHGV-0138836_53	eggNOG-mapper	931626.Awo_c19780	SEC-C Motif Domain Protein	NA
UHGV-0138836_53	PADLOC	E2_00013	E2	CBASS
UHGV-0138836_53	COG	COG3012	NA	NA
UHGV-0138836_54	UniRef90	UniRef90_UPI00115AE641	S-4TM family putative pore-forming effector	NA
UHGV-0138836_54	PADLOC	Effector_00054	4TM	CBASS
UHGV-0138836_54	Pfam	PF18159	SMODS-associating 4TM effector domain	S_4TM
UHGV-0138836_55	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0138836_55	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0138836_55	UniRef90	UniRef90_A0A3D2HUH7	Cytosine-specific methyltransferase	NA
UHGV-0138836_55	eggNOG-mapper	519441.Smon_0160	C-5 cytosine-specific DNA methylase	NA
UHGV-0138836_55	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0138836_55	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0138836_55	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0138836_55	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0138836_55	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0138836_56	UniRef90	UniRef90_A0A6M5WHF9	Putative restriction endonuclease	NA
UHGV-0138836_56	eggNOG-mapper	1028805.GGC_0354	NA	NA
UHGV-0138836_56	PADLOC	REase_II_00040	Type II restriction enzyme	RM
UHGV-0138836_57	eggNOG-mapper	742738.HMPREF9460_03132	NA	NA
UHGV-0138836_57	Pfam	PF20648	NA	DUF6809
UHGV-0138836_57	Structural annotation	PF20648	NA	NA