UHGV-0138845

Genome information

Genome length 32,197 bps

CDS count 48

Completeness 87.46% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138845
vOTU ID	vOTU-017810
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_389191
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.27
Jumbo phage	No

Genome content
Genome length	32,197 bps
GC content	35.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.74%
Average CDS length	638.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138845_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0138845_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0138845_1	UniRef90	UniRef90_UPI001B3C62A3	recombinase family protein	NA
UHGV-0138845_1	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-0138845_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0138845_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0138845_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0138845_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0138845_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0138845_2	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0138845_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0138845_2	UniRef90	UniRef90_UPI001B3C6673	3'-5' exonuclease	NA
UHGV-0138845_2	eggNOG-mapper	697281.Mahau_0101	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	NA
UHGV-0138845_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0138845_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0138845_2	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0138845_2	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0138845_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0138845_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0138845_4	UniRef90	UniRef90_UPI001B3C85BE	helix-turn-helix domain-containing protein	NA
UHGV-0138845_4	eggNOG-mapper	537013.CLOSTMETH_02500	NA	NA
UHGV-0138845_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138845_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0138845_4	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0138845_13	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0138845_13	UniRef90	UniRef90_UPI00195F249D	sporulation initiation factor Spo0A C-terminal domain-containing protein	NA
UHGV-0138845_13	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0138845_15	PHROG	phrog_7445	NA	unknown function
UHGV-0138845_15	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0138845_16	PHROG	phrog_8470	NA	unknown function
UHGV-0138845_16	UniRef90	UniRef90_UPI001B3C667E	PcfJ domain-containing protein	NA
UHGV-0138845_16	eggNOG-mapper	1123288.SOV_1c10520	PcfJ-like protein	NA
UHGV-0138845_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0138845_16	Structural annotation	PF14284	NA	NA
UHGV-0138845_17	PHROG	phrog_15609	NA	unknown function
UHGV-0138845_17	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0138845_17	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0138845_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0138845_19	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0138845_19	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0138845_21	PHROG	phrog_824	NA	unknown function
UHGV-0138845_21	UniRef90	UniRef90_UPI001B3C5924	VRR-NUC domain-containing protein	NA
UHGV-0138845_21	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-0138845_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0138845_21	Structural annotation	PF08774	NA	NA
UHGV-0138845_22	Structural annotation	PF09889	NA	NA
UHGV-0138845_23	eggNOG-mapper	862517.HMPREF9225_1655	NA	NA
UHGV-0138845_23	Structural annotation	PF02996	NA	NA
UHGV-0138845_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138845_24	UniRef90	UniRef90_UPI001B3C7C0C	HNH endonuclease	NA
UHGV-0138845_24	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0138845_24	Pfam	PF14471	NA	DUF4428
UHGV-0138845_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0138845_25	PHROG	phrog_1066	NA	unknown function
UHGV-0138845_25	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0138845_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0138845_26	UniRef90	UniRef90_UPI001B3C9001	terminase large subunit	NA
UHGV-0138845_26	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0138845_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0138845_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0138845_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0138845_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0138845_27	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0138845_27	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0138845_27	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-0138845_27	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0138845_27	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0138845_27	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0138845_27	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0138845_27	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0138845_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0138845_28	UniRef90	UniRef90_UPI001B3C9C1C	phage portal protein	NA
UHGV-0138845_28	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-0138845_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0138845_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0138845_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0138845_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0138845_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0138845_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0138845_29	UniRef90	UniRef90_UPI001B3CA106	Clp protease ClpP	NA
UHGV-0138845_29	eggNOG-mapper	1140001.I571_01745	Clp protease	NA
UHGV-0138845_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0138845_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0138845_29	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0138845_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0138845_30	UniRef90	UniRef90_UPI001B3C76A9	phage major capsid protein	NA
UHGV-0138845_30	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0138845_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0138845_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0138845_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0138845_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0138845_31	PHROG	phrog_5223	neck protein	connector
UHGV-0138845_31	UniRef90	UniRef90_UPI00078949C8	head-tail connector protein	NA
UHGV-0138845_31	Structural annotation	TIGR01560	NA	NA
UHGV-0138845_32	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0138845_32	UniRef90	UniRef90_UPI001B3C8C78	phage head closure protein	NA
UHGV-0138845_32	eggNOG-mapper	198094.BA_0471	head-tail adaptor	NA
UHGV-0138845_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0138845_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0138845_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0138845_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0138845_33	UniRef90	UniRef90_UPI001B3C7D0F	HK97 gp10 family phage protein	NA
UHGV-0138845_33	eggNOG-mapper	1341151.ASZU01000004_gene257	NA	NA
UHGV-0138845_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0138845_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0138845_34	eggNOG-mapper	1123315.AUIP01000001_gene1429	NA	NA
UHGV-0138845_34	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0138845_35	PHROG	phrog_88	major tail protein	tail
UHGV-0138845_35	eggNOG-mapper	1235798.C817_02573	phage major tail protein, phi13 family	NA
UHGV-0138845_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0138845_35	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0138845_36	PHROG	phrog_709	NA	unknown function
UHGV-0138845_36	UniRef90	UniRef90_Q928G5	Lin2570 protein	NA
UHGV-0138845_36	eggNOG-mapper	202752.JL53_03785	NA	NA
UHGV-0138845_36	Structural annotation	PF11836	NA	NA
UHGV-0138845_38	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0138845_38	UniRef90	UniRef90_UPI001B3C73E4	phage tail tape measure protein	NA
UHGV-0138845_38	eggNOG-mapper	411473.RUMCAL_03183	Phage tail tape measure protein, TP901 family	NA
UHGV-0138845_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0138845_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0138845_38	COG	COG5283	Phage-related tail protein	NA
UHGV-0138845_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0138845_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0138845_39	UniRef90	UniRef90_UPI001B3C7620	phage tail family protein	NA
UHGV-0138845_39	eggNOG-mapper	1408823.AXUS01000025_gene2633	phage tail	NA
UHGV-0138845_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0138845_39	Structural annotation	PF20195, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0138845_40	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0138845_40	UniRef90	UniRef90_UPI001B3C6B40	phage tail protein	NA
UHGV-0138845_40	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0138845_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0138845_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0138845_40	COG	COG4926	Phage-related protein	NA
UHGV-0138845_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0138845_41	PHROG	phrog_31398	NA	unknown function
UHGV-0138845_41	UniRef90	UniRef90_UPI001B3C8358	BppU family phage baseplate upper protein	NA
UHGV-0138845_41	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0138845_41	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0138845_42	PHROG	phrog_199	holin	lysis
UHGV-0138845_42	UniRef90	UniRef90_UPI001B3C59A2	phage holin family protein	NA
UHGV-0138845_42	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0138845_42	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0138845_42	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0138845_42	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0138845_42	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0138845_43	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0138845_43	PHROG	phrog_833	endolysin	lysis
UHGV-0138845_43	UniRef90	UniRef90_UPI001B3C4D40	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0138845_43	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-0138845_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0138845_43	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0138845_43	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0138845_43	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0138845_46	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0138845_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0138845_46	UniRef90	UniRef90_UPI001B3C7F6E	helix-turn-helix domain-containing protein	NA
UHGV-0138845_46	eggNOG-mapper	1321782.HMPREF1986_01964	NA	NA
UHGV-0138845_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0138845_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0138845_46	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0138845_47	Structural annotation	PF13058, MF_00745	NA	NA