UHGV-0138848

Genome information

Genome length 35,112 bps

CDS count 56

Completeness 88.00% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0138848
vOTU ID	vOTU-024918
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_369475
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.74
Jumbo phage	No

Genome content
Genome length	35,112 bps
GC content	52.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.54%
Average CDS length	565.71 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0138848_2	KOfam	K14059	int; integrase	NA
UHGV-0138848_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0138848_2	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0138848_2	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0138848_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0138848_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0138848_2	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0138848_3	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0138848_3	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0138848_5	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0138848_7	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0138848_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0138848_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0138848_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0138848_8	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0138848_8	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0138848_13	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0138848_13	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0138848_13	Pfam	PF06378	NA	DUF1071
UHGV-0138848_13	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0138848_14	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138848_14	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0138848_14	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0138848_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0138848_15	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0138848_15	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0138848_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0138848_16	PHROG	phrog_7566	NA	unknown function
UHGV-0138848_16	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0138848_16	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0138848_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0138848_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0138848_18	UniRef90	UniRef90_A0A810PUK9	Single-stranded DNA-binding protein	NA
UHGV-0138848_18	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0138848_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0138848_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0138848_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0138848_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0138848_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0138848_19	PHROG	phrog_15768	NA	unknown function
UHGV-0138848_19	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0138848_19	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-0138848_19	Pfam	PF19808	NA	DUF6291
UHGV-0138848_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0138848_19	Structural annotation	PF19808	NA	NA
UHGV-0138848_20	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0138848_21	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0138848_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0138848_21	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0138848_21	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0138848_21	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0138848_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0138848_21	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0138848_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0138848_23	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0138848_23	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0138848_23	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0138848_23	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0138848_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0138848_23	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0138848_26	PHROG	phrog_22529	NA	unknown function
UHGV-0138848_26	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0138848_26	eggNOG-mapper	1410622.JNKY01000010_gene1282	3D domain	NA
UHGV-0138848_26	Pfam	PF06725	3D domain	3D
UHGV-0138848_26	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0138848_26	Structural annotation	PF06725, NF040670, COG3584	NA	NA
UHGV-0138848_29	PHROG	phrog_38832	NA	unknown function
UHGV-0138848_29	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0138848_30	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0138848_30	UniRef90	UniRef90_A0A8G0W4U8	Class I SAM-dependent methyltransferase	NA
UHGV-0138848_30	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0138848_30	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0138848_30	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0138848_30	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0138848_30	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0138848_31	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0138848_34	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0138848_34	Structural annotation	TIGR01636	NA	NA
UHGV-0138848_35	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0138848_35	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0138848_35	UniRef90	UniRef90_R5GWS3	DNA (Cytosine-5-)-methyltransferase	NA
UHGV-0138848_35	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0138848_35	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0138848_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0138848_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0138848_35	COG	COG0863	DNA modification methylase	NA
UHGV-0138848_35	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0138848_37	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0138848_37	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-0138848_37	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0138848_37	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0138848_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-0138848_38	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0138848_38	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0138848_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0138848_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0138848_39	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0138848_39	UniRef90	UniRef90_UPI0019572D92	NA	NA
UHGV-0138848_39	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0138848_39	Pfam	PF14359	NA	DUF4406
UHGV-0138848_39	Structural annotation	PF14359	NA	NA
UHGV-0138848_40	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0138848_40	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0138848_40	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0138848_40	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0138848_40	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0138848_40	COG	COG2369	NA	NA
UHGV-0138848_40	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0138848_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0138848_42	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0138848_42	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0138848_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0138848_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0138848_43	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0138848_43	Structural annotation	PF06810	NA	NA
UHGV-0138848_44	PHROG	phrog_544	major head protein	head and packaging
UHGV-0138848_44	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0138848_44	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0138848_44	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0138848_46	PHROG	phrog_17977	NA	unknown function
UHGV-0138848_46	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0138848_46	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0138848_47	PHROG	phrog_17405	head protein	head and packaging
UHGV-0138848_47	Structural annotation	PF11367	NA	NA
UHGV-0138848_48	PHROG	phrog_885	major tail protein	tail
UHGV-0138848_48	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0138848_48	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0138848_48	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0138848_50	PHROG	phrog_7115	NA	unknown function
UHGV-0138848_50	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0138848_50	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0138848_50	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0138848_50	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0138848_51	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0138848_51	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0138848_51	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0138848_51	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0138848_52	UniRef90	UniRef90_A0A374UNT1	MtfA protein	NA
UHGV-0138848_52	eggNOG-mapper	877414.ATWA01000019_gene2049	NA	NA
UHGV-0138848_52	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0138848_53	PHROG	phrog_3558	tail protein	tail
UHGV-0138848_53	UniRef90	UniRef90_A0A847D2L1	Prophage_tail domain-containing protein	NA
UHGV-0138848_53	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0138848_53	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0138848_53	COG	COG4926	Phage-related protein	NA
UHGV-0138848_53	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0138848_54	PHROG	phrog_372	tail protein	tail
UHGV-0138848_54	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0138848_54	eggNOG-mapper	1235796.C815_00905	NA	NA
UHGV-0138848_54	Pfam	PF05895	NA	DUF859
UHGV-0138848_54	Structural annotation	PF05895, PF08931, MF_04116, NF010681, COG3291	NA	NA
UHGV-0138848_55	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0138848_55	UniRef90	UniRef90_A0A075KJD6	Putative truncated GIY-YIG endonuclease	NA
UHGV-0138848_55	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0138848_56	PHROG	phrog_1863	NA	unknown function
UHGV-0138848_56	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0138848_56	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA