UHGV-0139011

Genome information

Genome length 31,198 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9683

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139011
vOTU ID	vOTU-046017
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_383745
BioSample	SAMN04209218
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9683
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.86
Jumbo phage	No

Genome content
Genome length	31,198 bps
GC content	35.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.11%
Average CDS length	519.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139011_1	PHROG	phrog_1220	head protein	head and packaging
UHGV-0139011_1	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0139011_1	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0139011_1	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0139011_2	PHROG	phrog_538	minor tail protein	tail
UHGV-0139011_2	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0139011_2	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0139011_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0139011_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0139011_3	PHROG	phrog_36410	NA	unknown function
UHGV-0139011_3	UniRef90	UniRef90_A0A415G8B5	Phage tail family protein	NA
UHGV-0139011_3	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0139011_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0139011_3	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0139011_4	KOfam	K20361	USO1; intracellular protein transport protein USO1	NA
UHGV-0139011_4	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0139011_4	COG	COG5283	Phage-related tail protein	NA
UHGV-0139011_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0139011_7	PHROG	phrog_88	major tail protein	tail
UHGV-0139011_7	UniRef90	UniRef90_A0A1H0MGG5	Phage major tail protein, phi13 family	NA
UHGV-0139011_7	eggNOG-mapper	1027292.HMPREF9372_1253	Phage tail tube protein	NA
UHGV-0139011_7	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0139011_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0139011_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0139011_8	Structural annotation	PF05657	NA	NA
UHGV-0139011_9	Structural annotation	TIGR01725	NA	NA
UHGV-0139011_10	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0139011_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0139011_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0139011_12	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-0139011_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0139011_14	UniRef90	UniRef90_A0A5S5BNA7	HK97 family phage major capsid protein	NA
UHGV-0139011_14	eggNOG-mapper	198094.BA_3784	Phage capsid family	NA
UHGV-0139011_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0139011_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0139011_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0139011_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0139011_15	KOfam	K06904	NA	NA
UHGV-0139011_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0139011_15	UniRef90	UniRef90_A0A6N2W9T5	Caudovirus prohead protease	NA
UHGV-0139011_15	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0139011_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0139011_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0139011_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0139011_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0139011_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0139011_16	UniRef90	UniRef90_UPI0005C7E1AD	phage portal protein	NA
UHGV-0139011_16	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-0139011_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0139011_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0139011_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0139011_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0139011_17	UniRef90	UniRef90_UPI001D10BBFC	terminase large subunit	NA
UHGV-0139011_17	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0139011_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0139011_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0139011_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0139011_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0139011_18	PHROG	phrog_1066	NA	unknown function
UHGV-0139011_20	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0139011_20	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0139011_20	eggNOG-mapper	1157490.EL26_20750	HNH endonuclease	NA
UHGV-0139011_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0139011_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0139011_20	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0139011_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0139011_22	UniRef90	UniRef90_UPI00100A781C	transposase	NA
UHGV-0139011_22	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0139011_22	Structural annotation	PF07141	NA	NA
UHGV-0139011_23	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0139011_23	PHROG	phrog_435	endolysin	lysis
UHGV-0139011_23	UniRef90	UniRef90_F3BAA4	MurNAc-LAA domain-containing protein	NA
UHGV-0139011_23	eggNOG-mapper	742723.HMPREF9477_00888	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0139011_23	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0139011_23	Pfam	PF12200	NA	DUF3597
UHGV-0139011_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0139011_24	PHROG	phrog_1009	NA	unknown function
UHGV-0139011_25	PHROG	phrog_1129	holin	lysis
UHGV-0139011_25	UniRef90	UniRef90_UPI000485FFFD	phage holin family protein	NA
UHGV-0139011_25	eggNOG-mapper	556261.HMPREF0240_01266	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0139011_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0139011_25	Structural annotation	PF16079	NA	NA
UHGV-0139011_26	UniRef90	UniRef90_A0A6N4TPD2	HTH luxR-type domain-containing protein	NA
UHGV-0139011_26	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0139011_36	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0139011_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0139011_36	UniRef90	UniRef90_A0A6N4TM83	Integrase	NA
UHGV-0139011_36	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0139011_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139011_36	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0139011_36	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0139011_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0139011_38	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0139011_38	eggNOG-mapper	1321814.HMPREF9089_00921	NA	NA
UHGV-0139011_38	Structural annotation	PF21578	NA	NA
UHGV-0139011_46	eggNOG-mapper	411468.CLOSCI_00322	NA	NA
UHGV-0139011_51	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0139011_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0139011_51	UniRef90	UniRef90_UPI00164E5451	helix-turn-helix domain-containing protein	NA
UHGV-0139011_51	eggNOG-mapper	411468.CLOSCI_00323	sequence-specific DNA binding	NA
UHGV-0139011_51	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0139011_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0139011_51	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0139011_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0139011_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0139011_52	UniRef90	UniRef90_UPI00189E6FB8	recombinase family protein	NA
UHGV-0139011_52	eggNOG-mapper	411470.RUMGNA_00187	Resolvase, N terminal domain	NA
UHGV-0139011_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0139011_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0139011_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0139011_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0139011_52	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0139011_53	UniRef90	UniRef90_A0A416SUS6	Helix-turn-helix domain-containing protein	NA
UHGV-0139011_53	eggNOG-mapper	1410626.JHXB01000028_gene136	sequence-specific DNA binding	NA
UHGV-0139011_53	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0139011_53	Structural annotation	PF15731, NF007481, COG2944	NA	NA
UHGV-0139011_54	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139011_54	UniRef90	UniRef90_UPI0011776FE3	AP2 domain-containing protein	NA
UHGV-0139011_54	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0139011_54	Pfam	PF00847	AP2 domain	AP2
UHGV-0139011_54	Structural annotation	PF18337, PF00847	NA	NA