UHGV-0139029

Genome information

vOTU vOTU-020849

Genome length 60,397 bps

CDS count 80

Completeness 74.97% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139029
vOTU ID	vOTU-020849
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_367554
BioSample	SAMN03283272
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.97
Jumbo phage	No

Genome content
Genome length	60,397 bps
GC content	37.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	82.88%
Average CDS length	627.00 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139029_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0139029_1	PHROG	phrog_3088	amidase	lysis
UHGV-0139029_1	UniRef90	UniRef90_A0A173WJQ4	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0139029_1	eggNOG-mapper	478749.BRYFOR_07564	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0139029_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0139029_1	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0139029_1	COG	COG3087	Cell division protein FtsN	NA
UHGV-0139029_1	Structural annotation	PF01510, PF08230, NF008758, COG5632	NA	NA
UHGV-0139029_2	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0139029_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0139029_2	UniRef90	UniRef90_A0A417CA24	Integrase	NA
UHGV-0139029_2	eggNOG-mapper	1235790.C805_00610	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0139029_2	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0139029_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139029_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0139029_2	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0139029_5	PHROG	phrog_18444	NA	unknown function
UHGV-0139029_5	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0139029_6	PHROG	phrog_6616	tail protein	tail
UHGV-0139029_6	UniRef90	UniRef90_R5QUN9	Peptidase S74 domain-containing protein	NA
UHGV-0139029_6	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0139029_6	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0139029_7	PHROG	phrog_1194	NA	unknown function
UHGV-0139029_7	eggNOG-mapper	1117108.PAALTS15_13512	NA	NA
UHGV-0139029_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0139029_8	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0139029_8	UniRef90	UniRef90_UPI0009305F59	Rha family transcriptional regulator	NA
UHGV-0139029_8	eggNOG-mapper	180332.JTGN01000007_gene3610	PFAM Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0139029_8	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0139029_8	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0139029_8	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0139029_9	Structural annotation	PF01017, TIGR02890	NA	NA
UHGV-0139029_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0139029_10	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0139029_10	UniRef90	UniRef90_A0A373NQA0	Toxin Bro	NA
UHGV-0139029_10	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-0139029_10	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0139029_10	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0139029_10	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0139029_11	UniRef90	UniRef90_A0A1C5WHU9	Ribbon-helix-helix protein, copG family	NA
UHGV-0139029_11	eggNOG-mapper	1378168.N510_02331	Ribbon-helix-helix protein, copG family	NA
UHGV-0139029_11	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0139029_13	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0139029_13	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0139029_13	eggNOG-mapper	1280680.AUJU01000029_gene3362	Bacterial Ig-like domain 2	NA
UHGV-0139029_13	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0139029_13	COG	COG3227	Zn-dependent metalloprotease (Neutral protease B)	NA
UHGV-0139029_13	Structural annotation	PF02368, PF11906, NF005261	NA	NA
UHGV-0139029_14	eggNOG-mapper	1235793.C809_00537	NA	NA
UHGV-0139029_15	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0139029_16	PHROG	phrog_2316	NA	unknown function
UHGV-0139029_16	UniRef90	UniRef90_A0A373NQV5	NA	NA
UHGV-0139029_16	eggNOG-mapper	1280698.AUJS01000007_gene1022	NA	NA
UHGV-0139029_16	Pfam	PF16475	NA	DUF5052
UHGV-0139029_16	Structural annotation	PF16475	NA	NA
UHGV-0139029_17	PHROG	phrog_2880	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0139029_17	eggNOG-mapper	1121012.AUKX01000038_gene3753	Helix-turn-helix domain	NA
UHGV-0139029_17	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0139029_17	Structural annotation	PF13730, MF_01819, TIGR04176, COG5529	NA	NA
UHGV-0139029_18	UniRef90	UniRef90_UPI0011067A36	helix-turn-helix domain-containing protein	NA
UHGV-0139029_18	eggNOG-mapper	742765.HMPREF9457_03058	NA	NA
UHGV-0139029_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0139029_18	Structural annotation	PF08784, COG5625	NA	NA
UHGV-0139029_19	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0139029_19	UniRef90	UniRef90_UPI0009305F59	Rha family transcriptional regulator	NA
UHGV-0139029_19	eggNOG-mapper	411459.RUMOBE_01391	NA	NA
UHGV-0139029_19	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0139029_19	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0139029_19	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0139029_20	PHROG	phrog_28918	NA	unknown function
UHGV-0139029_20	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0139029_20	COG	COG5412	Phage-related protein	NA
UHGV-0139029_21	PHROG	phrog_28918	NA	unknown function
UHGV-0139029_21	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0139029_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0139029_24	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0139029_24	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0139029_25	PHROG	phrog_1129	holin	lysis
UHGV-0139029_25	UniRef90	UniRef90_UPI001D072DD9	phage holin family protein	NA
UHGV-0139029_25	eggNOG-mapper	1304866.K413DRAFT_0135	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0139029_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0139029_25	Structural annotation	PF16079	NA	NA
UHGV-0139029_26	Structural annotation	PF05657	NA	NA
UHGV-0139029_27	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0139029_28	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0139029_29	PHROG	phrog_28673	tail protein	tail
UHGV-0139029_29	UniRef90	UniRef90_UPI0015C565BB	SGNH/GDSL hydrolase family protein	NA
UHGV-0139029_29	eggNOG-mapper	1540090.A0A0A0RS40_9CAUD	NA	NA
UHGV-0139029_29	Structural annotation	PF10651, PF14606	NA	NA
UHGV-0139029_30	PHROG	phrog_19695	NA	unknown function
UHGV-0139029_30	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-0139029_30	Structural annotation	PF19714	NA	NA
UHGV-0139029_33	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0139029_34	PHROG	phrog_16490	NA	unknown function
UHGV-0139029_34	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0139029_35	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0139029_36	PHROG	phrog_21718	NA	unknown function
UHGV-0139029_36	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0139029_37	UniRef90	UniRef90_A0A373NQ83	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0139029_37	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0139029_37	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-0139029_38	PHROG	phrog_937	hemolysin	other
UHGV-0139029_39	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0139029_40	PHROG	phrog_29	major head protein	head and packaging
UHGV-0139029_40	UniRef90	UniRef90_A0A352P898	S-l_SbsC_C domain-containing protein	NA
UHGV-0139029_40	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0139029_40	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0139029_40	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0139029_41	PHROG	phrog_909	major head protein	head and packaging
UHGV-0139029_41	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0139029_41	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0139029_41	Structural annotation	PF02924	NA	NA
UHGV-0139029_42	eggNOG-mapper	1298920.KI911353_gene2662	NA	NA
UHGV-0139029_43	PHROG	phrog_64	portal protein	head and packaging
UHGV-0139029_43	UniRef90	UniRef90_A0A373NRD8	Phage portal protein	NA
UHGV-0139029_43	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0139029_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0139029_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0139029_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0139029_44	UniRef90	UniRef90_A0A373NRA4	NA	NA
UHGV-0139029_44	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0139029_44	Pfam	PF07374	NA	DUF1492
UHGV-0139029_44	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0139029_44	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0139029_45	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0139029_45	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0139029_45	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0139029_45	COG	COG5410	NA	NA
UHGV-0139029_45	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0139029_46	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0139029_46	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0139029_46	UniRef90	UniRef90_UPI001898CD6A	RtcB family protein	NA
UHGV-0139029_46	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0139029_46	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0139029_46	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0139029_46	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0139029_47	PHROG	phrog_13999	NA	unknown function
UHGV-0139029_47	eggNOG-mapper	1391428.V5KT07_9CAUD	NA	NA
UHGV-0139029_48	Structural annotation	PF09454	NA	NA
UHGV-0139029_59	PHROG	phrog_850	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0139029_59	UniRef90	UniRef90_A0A3E5EPH1	NA	NA
UHGV-0139029_59	eggNOG-mapper	476272.RUMHYD_01913	NA	NA
UHGV-0139029_59	Pfam	PF11443	NA	DUF2828
UHGV-0139029_59	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-0139029_59	Structural annotation	PF11443, MF_01340, COG2304	NA	NA
UHGV-0139029_62	eggNOG-mapper	476272.RUMHYD_01911	NA	NA
UHGV-0139029_62	Structural annotation	PF08962	NA	NA
UHGV-0139029_63	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0139029_63	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0139029_63	UniRef90	UniRef90_A0A373NRE9	Recombinase family protein	NA
UHGV-0139029_63	eggNOG-mapper	476272.RUMHYD_01910	Resolvase, N terminal domain	NA
UHGV-0139029_63	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0139029_63	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0139029_63	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0139029_64	eggNOG-mapper	1232453.BAIF02000058_gene1620	NA	NA
UHGV-0139029_66	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0139029_66	UniRef90	UniRef90_A0A373NRV7	XRE family transcriptional regulator	NA
UHGV-0139029_66	eggNOG-mapper	1235802.C823_05131	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0139029_66	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0139029_66	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0139029_68	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-0139029_70	Structural annotation	PF14481	NA	NA
UHGV-0139029_75	PHROG	phrog_8680	NA	unknown function
UHGV-0139029_75	UniRef90	UniRef90_A0A373NQS6	NA	NA
UHGV-0139029_75	eggNOG-mapper	476272.RUMHYD_01896	NA	NA
UHGV-0139029_75	Pfam	PF14386	NA	DUF4417
UHGV-0139029_75	Structural annotation	PF14386	NA	NA
UHGV-0139029_76	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0139029_76	PHROG	phrog_95	integrase	integration and excision
UHGV-0139029_76	UniRef90	UniRef90_A0A373NR59	Recombinase family protein	NA
UHGV-0139029_76	eggNOG-mapper	457412.RSAG_00880	Resolvase, N terminal domain	NA
UHGV-0139029_76	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0139029_76	Pfam	PF07508	Recombinase	Recombinase
UHGV-0139029_76	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0139029_76	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0139029_76	Structural annotation	PF07508, PF00239, PF14282, NF041201, COG1961, COG1579	NA	NA
UHGV-0139029_78	PHROG	phrog_9804	NA	unknown function
UHGV-0139029_78	UniRef90	UniRef90_A0A373NS51	Inhibitor_G39P domain-containing protein	NA
UHGV-0139029_78	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0139029_78	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0139029_78	Structural annotation	PF11417	NA	NA
UHGV-0139029_79	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0139029_79	UniRef90	UniRef90_A0A373NR46	Phage_rep_org_N domain-containing protein	NA
UHGV-0139029_79	eggNOG-mapper	1414720.CBYM010000001_gene675	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0139029_79	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0139029_79	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0139029_79	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0139029_80	UniRef90	UniRef90_A0A373NR35	NA	NA
UHGV-0139029_80	eggNOG-mapper	411459.RUMOBE_02036	NA	NA
UHGV-0139029_80	Pfam	PF14199	NA	DUF4317
UHGV-0139029_80	Structural annotation	PF14199	NA	NA