UHGV-0139034

Genome information

Genome length 61,456 bps

CDS count 89

Completeness 99.90% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139034
vOTU ID	vOTU-069258
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_367550
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.6
Jumbo phage	No

Genome content
Genome length	61,456 bps
GC content	51.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	89
CDS density	92.87%
Average CDS length	644.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139034_1	KOfam	K00850	pfkA, PFK; 6-phosphofructokinase 1 [EC:2.7.1.11]	NA
UHGV-0139034_1	PHROG	phrog_9896	phosphofructokinase	other
UHGV-0139034_1	UniRef90	UniRef90_A0A645DKJ6	ATP-dependent 6-phosphofructokinase	NA
UHGV-0139034_1	eggNOG-mapper	657322.FPR_31070	Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis	NA
UHGV-0139034_1	Pfam	PF00365	Phosphofructokinase	PFK
UHGV-0139034_1	COG	COG0205	6-phosphofructokinase	NA
UHGV-0139034_2	KOfam	K14059	int; integrase	NA
UHGV-0139034_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0139034_2	UniRef90	UniRef90_A0A2J4JS71	Integrase	NA
UHGV-0139034_2	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0139034_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139034_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0139034_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0139034_3	PHROG	phrog_6058	NA	unknown function
UHGV-0139034_3	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0139034_3	eggNOG-mapper	665956.HMPREF1032_00623	NA	NA
UHGV-0139034_4	PHROG	phrog_11237	NA	unknown function
UHGV-0139034_4	eggNOG-mapper	742740.HMPREF9474_02326	NA	NA
UHGV-0139034_8	PHROG	phrog_15866	NA	unknown function
UHGV-0139034_8	eggNOG-mapper	742740.HMPREF9474_02324	NA	NA
UHGV-0139034_9	PHROG	phrog_17256	NA	unknown function
UHGV-0139034_9	eggNOG-mapper	742733.HMPREF9469_05087	NA	NA
UHGV-0139034_14	PHROG	phrog_18243	NA	unknown function
UHGV-0139034_14	UniRef90	UniRef90_A0A416KK26	CTP synthase	NA
UHGV-0139034_16	PHROG	phrog_2152	NA	unknown function
UHGV-0139034_16	UniRef90	UniRef90_UPI001C0099E2	NA	NA
UHGV-0139034_16	eggNOG-mapper	742740.HMPREF9474_02314	NA	NA
UHGV-0139034_16	Pfam	PF19880	NA	DUF6353
UHGV-0139034_16	Structural annotation	PF19880	NA	NA
UHGV-0139034_19	PHROG	phrog_2152	NA	unknown function
UHGV-0139034_19	UniRef90	UniRef90_UPI001D065195	NA	NA
UHGV-0139034_19	eggNOG-mapper	428125.CLOLEP_01362	NA	NA
UHGV-0139034_19	Pfam	PF19880	NA	DUF6353
UHGV-0139034_19	Structural annotation	PF19880	NA	NA
UHGV-0139034_21	PHROG	phrog_4079	NA	unknown function
UHGV-0139034_21	eggNOG-mapper	742740.HMPREF9474_02312	NA	NA
UHGV-0139034_22	PHROG	phrog_2152	NA	unknown function
UHGV-0139034_22	UniRef90	UniRef90_UPI00156DA7B3	NA	NA
UHGV-0139034_22	eggNOG-mapper	742740.HMPREF9474_02310	NA	NA
UHGV-0139034_22	Pfam	PF19880	NA	DUF6353
UHGV-0139034_22	Structural annotation	PF19880	NA	NA
UHGV-0139034_23	PHROG	phrog_14968	NA	unknown function
UHGV-0139034_23	UniRef90	UniRef90_A0A2J4JS60	Histidine kinase	NA
UHGV-0139034_23	eggNOG-mapper	742733.HMPREF9469_05071	NA	NA
UHGV-0139034_24	PHROG	phrog_4695	NA	unknown function
UHGV-0139034_24	eggNOG-mapper	665950.HMPREF1025_01953	NA	NA
UHGV-0139034_25	PHROG	phrog_4678	NA	unknown function
UHGV-0139034_25	eggNOG-mapper	665950.HMPREF1025_01954	NA	NA
UHGV-0139034_27	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0139034_27	UniRef90	UniRef90_A0A329UQF2	SF3 helicase domain-containing protein	NA
UHGV-0139034_27	eggNOG-mapper	428125.CLOLEP_01375	DNA polymerase type-B family	NA
UHGV-0139034_27	Pfam	PF19263	NA	DUF5906
UHGV-0139034_27	Structural annotation	PF00136, PF05272, PF09250, MF_04100, MF_00016, NF005477, NF004420, COG3378, COG0417	NA	NA
UHGV-0139034_28	Structural annotation	PF13938, PF05239, COG1532	NA	NA
UHGV-0139034_29	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0139034_29	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0139034_30	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0139034_33	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0139034_33	UniRef90	UniRef90_UPI001D08DE3D	DEAD/DEAH box helicase family protein	NA
UHGV-0139034_33	eggNOG-mapper	742740.HMPREF9474_02299	Helicase conserved C-terminal domain	NA
UHGV-0139034_33	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0139034_33	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0139034_38	PHROG	phrog_18716	NA	unknown function
UHGV-0139034_38	UniRef90	UniRef90_UPI001C00DD4A	NA	NA
UHGV-0139034_38	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0139034_38	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0139034_38	Structural annotation	PF18909	NA	NA
UHGV-0139034_39	PHROG	phrog_19852	NA	unknown function
UHGV-0139034_39	eggNOG-mapper	742733.HMPREF9469_05061	NA	NA
UHGV-0139034_41	Structural annotation	PF08863, MF_01077	NA	NA
UHGV-0139034_45	PHROG	phrog_16725	NA	unknown function
UHGV-0139034_49	Structural annotation	PF14120	NA	NA
UHGV-0139034_51	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0139034_51	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0139034_51	UniRef90	UniRef90_A0A3E2V7T8	FAD-dependent thymidylate synthase	NA
UHGV-0139034_51	eggNOG-mapper	397291.C804_00906	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0139034_51	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0139034_51	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0139034_51	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0139034_51	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0139034_53	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0139034_53	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0139034_53	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0139034_56	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-0139034_56	Structural annotation	PF01870, NF040854, COG1591	NA	NA
UHGV-0139034_57	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139034_57	UniRef90	UniRef90_A0A7X5EAL7	NA	NA
UHGV-0139034_57	eggNOG-mapper	742740.HMPREF9474_02279	NA	NA
UHGV-0139034_57	Pfam	PF10926	NA	DUF2800
UHGV-0139034_57	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0139034_58	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0139034_58	UniRef90	UniRef90_A0A2J4JS19	Phage tail protein	NA
UHGV-0139034_58	eggNOG-mapper	742733.HMPREF9469_05039	NA	NA
UHGV-0139034_58	Pfam	PF09339	IclR helix-turn-helix domain	HTH_IclR
UHGV-0139034_58	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0139034_58	Structural annotation	PF05183	NA	NA
UHGV-0139034_59	PHROG	phrog_4303	NA	unknown function
UHGV-0139034_59	eggNOG-mapper	665956.HMPREF1032_00666	NA	NA
UHGV-0139034_61	PHROG	phrog_4259	NA	unknown function
UHGV-0139034_61	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-0139034_61	eggNOG-mapper	742740.HMPREF9474_02276	NA	NA
UHGV-0139034_62	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139034_62	UniRef90	UniRef90_A0A6M3SUQ0	HNH endonuclease	NA
UHGV-0139034_62	eggNOG-mapper	428125.CLOLEP_01405	NA	NA
UHGV-0139034_63	PHROG	phrog_1454	NA	unknown function
UHGV-0139034_64	PHROG	phrog_918	NA	unknown function
UHGV-0139034_64	UniRef90	UniRef90_UPI001CBAD829	NA	NA
UHGV-0139034_64	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0139034_64	Pfam	PF19791	NA	DUF6275
UHGV-0139034_64	Structural annotation	PF19791	NA	NA
UHGV-0139034_65	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0139034_65	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-0139034_65	eggNOG-mapper	742733.HMPREF9469_05035	NA	NA
UHGV-0139034_66	PHROG	phrog_19695	NA	unknown function
UHGV-0139034_66	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0139034_66	Structural annotation	PF19714	NA	NA
UHGV-0139034_67	eggNOG-mapper	1304866.K413DRAFT_4770	PFAM Formylglycine-generating sulfatase enzyme	NA
UHGV-0139034_67	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0139034_67	Structural annotation	PF10651, COG3470	NA	NA
UHGV-0139034_68	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0139034_68	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0139034_68	UniRef90	UniRef90_A0A329UL42	BIG2 domain-containing protein	NA
UHGV-0139034_68	eggNOG-mapper	657322.FPR_13550	Bacterial Ig-like domain (group 2)	NA
UHGV-0139034_68	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0139034_68	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0139034_68	COG	COG5492	NA	NA
UHGV-0139034_68	Structural annotation	PF02973	NA	NA
UHGV-0139034_69	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0139034_69	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0139034_69	UniRef90	UniRef90_A0A3E2TYR6	SGNH/GDSL hydrolase family protein	NA
UHGV-0139034_69	eggNOG-mapper	411463.EUBVEN_01828	lipolytic protein G-D-S-L family	NA
UHGV-0139034_69	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0139034_69	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0139034_69	Structural annotation	PF16255, NF007819, COG2755	NA	NA
UHGV-0139034_70	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0139034_70	UniRef90	UniRef90_UPI001D05F004	terminase large subunit	NA
UHGV-0139034_70	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-0139034_70	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0139034_70	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0139034_70	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0139034_70	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0139034_71	Structural annotation	PF21344, TIGR01206	NA	NA
UHGV-0139034_74	PHROG	phrog_32444	NA	unknown function
UHGV-0139034_74	eggNOG-mapper	478749.BRYFOR_08525	NA	NA
UHGV-0139034_75	PHROG	phrog_12	portal protein	head and packaging
UHGV-0139034_75	UniRef90	UniRef90_UPI001D05DA00	phage portal protein	NA
UHGV-0139034_75	eggNOG-mapper	411460.RUMTOR_01348	Phage portal protein	NA
UHGV-0139034_75	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0139034_75	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0139034_76	KOfam	K06904	NA	NA
UHGV-0139034_76	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0139034_76	UniRef90	UniRef90_A0A416KKF2	Phage major capsid protein	NA
UHGV-0139034_76	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-0139034_76	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0139034_76	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0139034_76	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0139034_78	PHROG	phrog_4270	NA	unknown function
UHGV-0139034_78	eggNOG-mapper	428125.CLOLEP_01413	NA	NA
UHGV-0139034_78	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0139034_79	UniRef90	UniRef90_D4P7D8	Structural protein	NA
UHGV-0139034_79	eggNOG-mapper	691965.D4P7D8_9CAUD	NA	NA
UHGV-0139034_79	Structural annotation	PF20765	NA	NA
UHGV-0139034_80	PHROG	phrog_2645	major tail protein	tail
UHGV-0139034_80	UniRef90	UniRef90_A0A644ZQB8	Big_5 domain-containing protein	NA
UHGV-0139034_80	eggNOG-mapper	478749.BRYFOR_08518	NA	NA
UHGV-0139034_80	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0139034_81	PHROG	phrog_4282	NA	unknown function
UHGV-0139034_81	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0139034_82	PHROG	phrog_4338	NA	unknown function
UHGV-0139034_82	eggNOG-mapper	428125.CLOLEP_01417	NA	NA
UHGV-0139034_83	UniRef90	UniRef90_A0A3E2V879	HK97 gp10 family phage protein	NA
UHGV-0139034_83	eggNOG-mapper	742733.HMPREF9469_05021	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0139034_83	Structural annotation	TIGR01725	NA	NA
UHGV-0139034_84	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0139034_84	UniRef90	UniRef90_A0A3F3JTX1	TMP_3 domain-containing protein	NA
UHGV-0139034_84	eggNOG-mapper	478749.BRYFOR_08513	Peptidoglycan-binding domain 1 protein	NA
UHGV-0139034_84	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0139034_85	PHROG	phrog_3558	tail protein	tail
UHGV-0139034_85	Pfam	PF19789	NA	DUF6273
UHGV-0139034_85	Structural annotation	PF14594, PF18911, TIGR01665, COG4926	NA	NA
UHGV-0139034_86	UniRef90	UniRef90_B0MAY3	Putative phage tail component domain protein	NA
UHGV-0139034_86	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0139034_86	COG	COG4722	Phage-related protein YomH	NA
UHGV-0139034_86	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0139034_87	Structural annotation	PF21602, PF00544, PF13385, NF007517, NF007636	NA	NA
UHGV-0139034_88	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0139034_88	PHROG	phrog_894	endolysin	lysis
UHGV-0139034_88	UniRef90	UniRef90_A0A2A7AXQ4	Peptidase M15	NA
UHGV-0139034_88	eggNOG-mapper	657322.FPR_13570	Peptidase M15A	NA
UHGV-0139034_88	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0139034_88	COG	COG3108	NA	NA
UHGV-0139034_88	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0139034_89	PHROG	phrog_1863	NA	unknown function
UHGV-0139034_89	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA