UHGV-0139050

Genome information

Genome length 80,726 bps

CDS count 128

Completeness 100.00% (complete)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139050
vOTU ID	vOTU-046018
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_342187
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.72
Jumbo phage	No

Genome content
Genome length	80,726 bps
GC content	46.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	128
CDS density	87.28%
Average CDS length	551.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139050_1	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0139050_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0139050_1	UniRef90	UniRef90_A0A843HUG4	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0139050_1	eggNOG-mapper	742817.HMPREF9449_01776	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0139050_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0139050_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0139050_1	Structural annotation	PF01507, MF_00063, NF003587, COG0175	NA	NA
UHGV-0139050_2	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0139050_2	UniRef90	UniRef90_A0A413BQE0	NAD(P)-dependent oxidoreductase	NA
UHGV-0139050_2	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-0139050_2	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0139050_2	Structural annotation	PF03848, MF_00341, NF012219, COG1255	NA	NA
UHGV-0139050_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0139050_3	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0139050_3	UniRef90	UniRef90_UPI001C2C6E49	phage antirepressor KilAC domain-containing protein	NA
UHGV-0139050_3	eggNOG-mapper	12336.Q331V6_CBCP	DNA binding	NA
UHGV-0139050_3	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0139050_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0139050_3	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0139050_3	Structural annotation	PF03374, PF09669, TIGR02681, COG3645	NA	NA
UHGV-0139050_4	PHROG	phrog_1485	NA	unknown function
UHGV-0139050_4	UniRef90	UniRef90_UPI001C2C3223	nucleotide modification associated domain-containing protein	NA
UHGV-0139050_4	eggNOG-mapper	240302.BN982_00203	NA	NA
UHGV-0139050_4	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0139050_4	Structural annotation	PF07659	NA	NA
UHGV-0139050_14	eggNOG-mapper	1347393.HG726021_gene701	NA	NA
UHGV-0139050_14	Structural annotation	PF09465, NF008465, COG0231	NA	NA
UHGV-0139050_21	PHROG	phrog_11100	NA	unknown function
UHGV-0139050_23	eggNOG-mapper	1515615.HQ41_08200	COG NOG33922 non supervised orthologous group	NA
UHGV-0139050_32	UniRef90	UniRef90_UPI001C3951D3	DpnD/PcfM family protein	NA
UHGV-0139050_32	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-0139050_32	Structural annotation	PF14207	NA	NA
UHGV-0139050_36	eggNOG-mapper	445970.ALIPUT_02571	NA	NA
UHGV-0139050_36	PADLOC	drt-cluster346	DRT	DRT
UHGV-0139050_37	UniRef90	UniRef90_UPI001C2C02C1	ubiquitin carboxyl-hydrolase	NA
UHGV-0139050_37	eggNOG-mapper	547042.BACCOPRO_02126	NA	NA
UHGV-0139050_37	PADLOC	drt-cluster337	DRT	DRT
UHGV-0139050_39	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0139050_39	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0139050_39	UniRef90	UniRef90_UPI001C2B9107	RNA-directed DNA polymerase	NA
UHGV-0139050_39	eggNOG-mapper	445970.ALIPUT_02574	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0139050_39	PADLOC	drt-UG27	DRT	DRT
UHGV-0139050_39	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0139050_39	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0139050_39	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0139050_44	Pfam	PF13648	Lipocalin-like domain	Lipocalin_4
UHGV-0139050_44	Structural annotation	PF13648, MF_01297, TIGR03066, COG3187	NA	NA
UHGV-0139050_45	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0139050_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0139050_45	UniRef90	UniRef90_UPI001C2B9299	tyrosine-type recombinase/integrase	NA
UHGV-0139050_45	eggNOG-mapper	1236504.HMPREF2132_10995	Belongs to the 'phage' integrase family	NA
UHGV-0139050_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139050_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0139050_45	Structural annotation	PF00589, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0139050_48	UniRef90	UniRef90_A0A096B0F0	DNA breaking-rejoining protein	NA
UHGV-0139050_49	KOfam	K14059	int; integrase	NA
UHGV-0139050_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0139050_49	UniRef90	UniRef90_UPI001C2B82E9	phage integrase SAM-like domain-containing protein	NA
UHGV-0139050_49	eggNOG-mapper	1236504.HMPREF2132_10965	Belongs to the 'phage' integrase family	NA
UHGV-0139050_49	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0139050_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0139050_49	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0139050_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0139050_50	eggNOG-mapper	665956.HMPREF1032_00149	NA	NA
UHGV-0139050_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139050_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0139050_50	Structural annotation	PF12844, MF_02017, NF041951, COG1396	NA	NA
UHGV-0139050_51	UniRef90	UniRef90_UPI001C2B7BE2	helix-turn-helix domain-containing protein	NA
UHGV-0139050_51	eggNOG-mapper	491205.JARQ01000001_gene722	Helix-turn-helix domain	NA
UHGV-0139050_51	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0139050_51	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0139050_52	UniRef90	UniRef90_A0A3R6ABF2	Helix-turn-helix domain-containing protein	NA
UHGV-0139050_55	PHROG	phrog_19572	NA	unknown function
UHGV-0139050_55	UniRef90	UniRef90_UPI001C2CB9CE	NA	NA
UHGV-0139050_55	eggNOG-mapper	1227276.HMPREF9148_01119	NA	NA
UHGV-0139050_55	Pfam	PF14902	NA	DUF4494
UHGV-0139050_55	Structural annotation	PF14902	NA	NA
UHGV-0139050_56	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0139050_56	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0139050_56	UniRef90	UniRef90_UPI0018980A71	recombinase RecT	NA
UHGV-0139050_56	eggNOG-mapper	1329250.WOSG25_170080	RecT family	NA
UHGV-0139050_56	Pfam	PF03837	RecT family	RecT
UHGV-0139050_56	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0139050_56	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0139050_56	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0139050_57	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-0139050_57	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139050_57	UniRef90	UniRef90_UPI001C2BD1AC	YqaJ viral recombinase family protein	NA
UHGV-0139050_57	eggNOG-mapper	411901.BACCAC_02351	YqaJ-like viral recombinase domain	NA
UHGV-0139050_57	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0139050_57	Structural annotation	TIGR03033, COG5377	NA	NA
UHGV-0139050_58	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0139050_58	UniRef90	UniRef90_UPI001C2BD71F	NA	NA
UHGV-0139050_58	eggNOG-mapper	1287476.HMPREF1651_05315	COG NOG19098 non supervised orthologous group	NA
UHGV-0139050_58	Pfam	PF11325	NA	DUF3127
UHGV-0139050_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0139050_58	Structural annotation	PF11325, MF_00720, TIGR04418, COG2965	NA	NA
UHGV-0139050_59	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0139050_59	UniRef90	UniRef90_UPI001C2BDF1D	NA	NA
UHGV-0139050_59	Pfam	PF19808	NA	DUF6291
UHGV-0139050_59	Structural annotation	PF19808	NA	NA
UHGV-0139050_62	Structural annotation	PF13619	NA	NA
UHGV-0139050_70	PHROG	phrog_32914	NA	unknown function
UHGV-0139050_71	Structural annotation	PF09465, NF005100	NA	NA
UHGV-0139050_72	PHROG	phrog_10066	NA	unknown function
UHGV-0139050_73	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0139050_74	PHROG	phrog_8684	NA	unknown function
UHGV-0139050_74	UniRef90	UniRef90_UPI001C2C4F30	YopX family protein	NA
UHGV-0139050_74	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0139050_74	Pfam	PF09643	YopX protein	YopX
UHGV-0139050_74	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0139050_74	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0139050_78	UniRef90	UniRef90_A0A4Z0V1T2	C2H2-type domain-containing protein	NA
UHGV-0139050_78	Structural annotation	PF18450	NA	NA
UHGV-0139050_80	KOfam	K06941	rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]	NA
UHGV-0139050_80	PHROG	phrog_24834	NA	unknown function
UHGV-0139050_80	UniRef90	UniRef90_UPI001C2C0634	Fe-S-oxidoreductase	NA
UHGV-0139050_80	eggNOG-mapper	449673.BACSTE_02201	rRNA (adenine-C2-)-methyltransferase activity	NA
UHGV-0139050_80	COG	COG0820	Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37	NA
UHGV-0139050_80	Structural annotation	MF_01849, TIGR00048, COG0820	NA	NA
UHGV-0139050_81	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0139050_81	UniRef90	UniRef90_UPI001C2CB487	NA	NA
UHGV-0139050_81	eggNOG-mapper	1236504.HMPREF2132_11460	NA	NA
UHGV-0139050_81	Pfam	PF14359	NA	DUF4406
UHGV-0139050_81	Structural annotation	PF14359, MF_03036, NF003642, COG3613	NA	NA
UHGV-0139050_85	UniRef90	UniRef90_A0A7M1RY91	Nuclear pore complex-like protein	NA
UHGV-0139050_87	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139050_87	UniRef90	UniRef90_A0A072Y4B8	Putative SegB homing endonuclease	NA
UHGV-0139050_87	eggNOG-mapper	1151292.QEW_0717	GIY-YIG type nucleases (URI domain)	NA
UHGV-0139050_87	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0139050_87	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0139050_87	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0139050_87	Structural annotation	PF19835, PF07453, TIGR01453	NA	NA
UHGV-0139050_89	UniRef90	UniRef90_UPI001C2B78AF	helix-turn-helix domain-containing protein	NA
UHGV-0139050_89	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0139050_89	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0139050_91	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-0139050_92	UniRef90	UniRef90_UPI001F20F464	phage holin family protein	NA
UHGV-0139050_92	eggNOG-mapper	1121097.JCM15093_2703	NA	NA
UHGV-0139050_92	Structural annotation	NF035928	NA	NA
UHGV-0139050_93	PHROG	phrog_1501	NA	unknown function
UHGV-0139050_93	UniRef90	UniRef90_R6EVM2	NA	NA
UHGV-0139050_93	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-0139050_93	Pfam	PF18925	NA	DUF5675
UHGV-0139050_93	Structural annotation	PF18925	NA	NA
UHGV-0139050_94	UniRef90	UniRef90_F3PDX9	Conserved domain protein	NA
UHGV-0139050_94	eggNOG-mapper	411479.BACUNI_00732	NA	NA
UHGV-0139050_95	UniRef90	UniRef90_UPI001F36DCAA	NA	NA
UHGV-0139050_95	eggNOG-mapper	1122985.HMPREF1991_01560	NA	NA
UHGV-0139050_95	Pfam	PF14301	NA	DUF4376
UHGV-0139050_95	Structural annotation	PF14301	NA	NA
UHGV-0139050_96	Structural annotation	PF10794, PF20942, PF13620, NF040788, COG2351	NA	NA
UHGV-0139050_97	PHROG	phrog_38044	NA	unknown function
UHGV-0139050_97	eggNOG-mapper	1121100.JCM6294_565	Phage minor structural protein	NA
UHGV-0139050_97	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0139050_97	COG	COG4926	Phage-related protein	NA
UHGV-0139050_97	Structural annotation	PF21466, PF20073, PF14594, NF033675	NA	NA
UHGV-0139050_98	eggNOG-mapper	1236504.HMPREF2132_11265	NA	NA
UHGV-0139050_98	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0139050_99	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0139050_99	UniRef90	UniRef90_UPI00056108A0	glycine zipper domain-containing protein	NA
UHGV-0139050_99	eggNOG-mapper	742727.HMPREF9447_04839	tape measure	NA
UHGV-0139050_99	COG	COG1511	NA	NA
UHGV-0139050_100	eggNOG-mapper	1236504.HMPREF2132_11225	NA	NA
UHGV-0139050_101	Structural annotation	PF08813, TIGR01603, COG5437	NA	NA
UHGV-0139050_102	Structural annotation	PF06141	NA	NA
UHGV-0139050_103	PHROG	phrog_5377	NA	unknown function
UHGV-0139050_104	Structural annotation	PF13437	NA	NA
UHGV-0139050_105	eggNOG-mapper	1236504.HMPREF2132_11200	NA	NA
UHGV-0139050_105	Structural annotation	PF20449	NA	NA
UHGV-0139050_106	PHROG	phrog_29	major head protein	head and packaging
UHGV-0139050_106	UniRef90	UniRef90_A0A8B2AWS5	Major capsid protein	NA
UHGV-0139050_106	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0139050_107	Structural annotation	PF21430	NA	NA
UHGV-0139050_109	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0139050_109	UniRef90	UniRef90_A0A3R5XWW2	HintN domain-containing protein	NA
UHGV-0139050_109	eggNOG-mapper	1236504.HMPREF2132_11175	Terminase-like family	NA
UHGV-0139050_109	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0139050_109	COG	COG5362	Phage terminase large subunit	NA
UHGV-0139050_109	Structural annotation	PF04466, PF05203, PF20441, MF_04146, TIGR01547, NF005852, COG4373, COG1372	NA	NA
UHGV-0139050_110	PHROG	phrog_64	portal protein	head and packaging
UHGV-0139050_110	UniRef90	UniRef90_UPI001C2C654D	phage portal protein	NA
UHGV-0139050_110	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0139050_111	eggNOG-mapper	1236504.HMPREF2132_11155	NA	NA
UHGV-0139050_111	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0139050_114	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0139050_114	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0139050_114	UniRef90	UniRef90_UPI001C2C5599	NA	NA
UHGV-0139050_114	eggNOG-mapper	1236504.HMPREF2132_11050	Phage plasmid primase, P4 family domain protein	NA
UHGV-0139050_114	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0139050_114	Pfam	PF19263	NA	DUF5906
UHGV-0139050_114	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0139050_114	Structural annotation	PF04735, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0139050_115	PHROG	phrog_10156	NA	unknown function
UHGV-0139050_115	eggNOG-mapper	742727.HMPREF9447_04840	NA	NA
UHGV-0139050_117	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0139050_117	UniRef90	UniRef90_A0A1L8CM45	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0139050_117	eggNOG-mapper	153496.JNAB01000022_gene2638	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0139050_117	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0139050_117	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0139050_118	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0139050_118	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0139050_118	UniRef90	UniRef90_V2Y2X0	dUTP diphosphatase	NA
UHGV-0139050_118	eggNOG-mapper	592026.GCWU0000282_002542	NA	NA
UHGV-0139050_118	Pfam	PF00692	dUTPase	dUTPase
UHGV-0139050_118	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0139050_118	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0139050_126	PHROG	phrog_1365	NA	unknown function