UHGV-0139112

Genome information

Genome length 42,539 bps

CDS count 60

Completeness 93.38% (high-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139112
vOTU ID	vOTU-065337
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_375971
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.38% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.3
Jumbo phage	No

Genome content
Genome length	42,539 bps
GC content	31.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.88%
Average CDS length	654.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139112_2	Structural annotation	PF20795	NA	NA
UHGV-0139112_3	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139112_3	UniRef90	UniRef90_UPI00068B8C76	AP2 domain-containing protein	NA
UHGV-0139112_3	eggNOG-mapper	169963.lmo2276	NA	NA
UHGV-0139112_3	Pfam	PF00847	AP2 domain	AP2
UHGV-0139112_3	Structural annotation	PF18741, PF17375, MF_00048, NF011276, COG3727	NA	NA
UHGV-0139112_6	PHROG	phrog_1281	NA	unknown function
UHGV-0139112_6	UniRef90	UniRef90_A0A1Y4QRE1	NA	NA
UHGV-0139112_6	eggNOG-mapper	518637.EUBIFOR_00090	NA	NA
UHGV-0139112_6	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0139112_6	COG	COG3600	NA	NA
UHGV-0139112_8	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0139112_8	PHROG	phrog_21357	endolysin	lysis
UHGV-0139112_8	UniRef90	UniRef90_G9QXB0	Peptidase C51 domain-containing protein	NA
UHGV-0139112_8	eggNOG-mapper	428126.CLOSPI_02072	lysozyme activity	NA
UHGV-0139112_8	Pfam	PF05257	CHAP domain	CHAP
UHGV-0139112_8	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0139112_8	COG	COG1388	LysM repeat	NA
UHGV-0139112_8	Structural annotation	PF10030, TIGR02594, COG4991, COG3942	NA	NA
UHGV-0139112_10	PHROG	phrog_443	holin	lysis
UHGV-0139112_10	UniRef90	UniRef90_UPI00197EA853	holin	NA
UHGV-0139112_10	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0139112_10	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0139112_10	Structural annotation	PF16945	NA	NA
UHGV-0139112_11	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0139112_11	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0139112_13	PHROG	phrog_6468	tail fiber protein; host specificity	tail
UHGV-0139112_13	UniRef90	UniRef90_UPI001C2BBD47	phage tail protein	NA
UHGV-0139112_13	eggNOG-mapper	1232453.BAIF02000029_gene2735	cellulase activity	NA
UHGV-0139112_13	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0139112_13	Structural annotation	PF14594, PF16820, TIGR01665, COG4926	NA	NA
UHGV-0139112_14	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0139112_14	UniRef90	UniRef90_UPI00196155A9	phage tail family protein	NA
UHGV-0139112_14	eggNOG-mapper	1235796.C815_00909	Phage tail protein	NA
UHGV-0139112_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0139112_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0139112_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0139112_14	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0139112_15	PHROG	phrog_1204	tail protein	tail
UHGV-0139112_15	UniRef90	UniRef90_A0A1Y4QT78	TMP_3 domain-containing protein	NA
UHGV-0139112_15	eggNOG-mapper	1158602.I590_00638	nuclear chromosome segregation	NA
UHGV-0139112_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0139112_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0139112_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0139112_15	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0139112_16	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0139112_16	UniRef90	UniRef90_A0A0K9N8J7	NA	NA
UHGV-0139112_16	eggNOG-mapper	476272.RUMHYD_02862	NA	NA
UHGV-0139112_17	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0139112_17	UniRef90	UniRef90_A0A4R3K6Z9	Tail assembly chaperone	NA
UHGV-0139112_17	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0139112_17	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0139112_17	Structural annotation	PF12363	NA	NA
UHGV-0139112_18	PHROG	phrog_238	major tail protein	tail
UHGV-0139112_18	UniRef90	UniRef90_A0A1Y4QSM9	Phage major tail protein, TP901-1 family	NA
UHGV-0139112_18	eggNOG-mapper	476272.RUMHYD_02860	Phage tail tube protein	NA
UHGV-0139112_18	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0139112_18	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0139112_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0139112_19	PHROG	phrog_176	tail terminator	connector
UHGV-0139112_19	UniRef90	UniRef90_UPI00051ADDDD	NA	NA
UHGV-0139112_19	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0139112_19	Structural annotation	PF11367	NA	NA
UHGV-0139112_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0139112_20	UniRef90	UniRef90_UPI0001A2720F	HK97 gp10 family phage protein	NA
UHGV-0139112_20	eggNOG-mapper	1232453.BAIF02000011_gene3362	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0139112_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0139112_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0139112_20	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0139112_21	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0139112_21	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0139112_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0139112_22	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0139112_22	UniRef90	UniRef90_UPI001C2BC1AB	phage head-tail connector protein	NA
UHGV-0139112_22	eggNOG-mapper	1235796.C815_00917	Phage gp6-like head-tail connector protein	NA
UHGV-0139112_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0139112_22	Structural annotation	PF05135	NA	NA
UHGV-0139112_23	PHROG	phrog_544	major head protein	head and packaging
UHGV-0139112_23	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0139112_23	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-0139112_23	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0139112_23	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0139112_24	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0139112_24	UniRef90	UniRef90_UPI001D064961	NA	NA
UHGV-0139112_24	eggNOG-mapper	476272.RUMHYD_02853	NA	NA
UHGV-0139112_24	Pfam	PF14265	NA	DUF4355
UHGV-0139112_24	Structural annotation	PF14265	NA	NA
UHGV-0139112_25	PHROG	phrog_30609	NA	unknown function
UHGV-0139112_25	Structural annotation	PF21485	NA	NA
UHGV-0139112_27	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0139112_27	UniRef90	UniRef90_UPI000E509362	minor capsid protein	NA
UHGV-0139112_27	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0139112_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0139112_27	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0139112_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0139112_27	COG	COG2369	NA	NA
UHGV-0139112_27	Structural annotation	PF03496, PF04233, MF_04142, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0139112_28	eggNOG-mapper	397291.C804_01614	phage minor capsid protein	NA
UHGV-0139112_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0139112_29	UniRef90	UniRef90_A0A1Y4QSM0	Phage portal protein	NA
UHGV-0139112_29	eggNOG-mapper	1235792.C808_05332	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0139112_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0139112_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0139112_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0139112_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0139112_30	PHROG	phrog_10250	NA	unknown function
UHGV-0139112_30	UniRef90	UniRef90_A0A1Y4QSP6	Terminase	NA
UHGV-0139112_30	eggNOG-mapper	1121105.ATXL01000006_gene1371	Terminase-like family	NA
UHGV-0139112_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0139112_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0139112_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0139112_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0139112_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0139112_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0139112_31	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0139112_31	UniRef90	UniRef90_UPI001C2C96F3	terminase small subunit	NA
UHGV-0139112_31	eggNOG-mapper	903814.ELI_3216	Terminase small subunit	NA
UHGV-0139112_31	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0139112_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0139112_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0139112_31	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0139112_32	PHROG	phrog_1233	NA	unknown function
UHGV-0139112_32	eggNOG-mapper	1120978.KB894086_gene458	NA	NA
UHGV-0139112_33	PHROG	phrog_21498	NA	unknown function
UHGV-0139112_33	UniRef90	UniRef90_UPI0016246E09	chromosome partitioning protein ParB	NA
UHGV-0139112_33	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0139112_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0139112_33	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0139112_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0139112_34	UniRef90	UniRef90_A0A1H3HDL4	Phage terminase small subunit	NA
UHGV-0139112_34	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-0139112_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0139112_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0139112_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0139112_35	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0139112_35	UniRef90	UniRef90_UPI001D068009	NA	NA
UHGV-0139112_35	eggNOG-mapper	936573.HMPREF1147_0268	NA	NA
UHGV-0139112_35	Pfam	PF10097	NA	DUF2335
UHGV-0139112_35	COG	COG5346	NA	NA
UHGV-0139112_35	Structural annotation	PF10097, COG5346	NA	NA
UHGV-0139112_37	Structural annotation	TIGR01636	NA	NA
UHGV-0139112_39	PHROG	phrog_8470	NA	unknown function
UHGV-0139112_39	UniRef90	UniRef90_UPI000E4E20B7	PcfJ domain-containing protein	NA
UHGV-0139112_39	eggNOG-mapper	1232446.BAIE02000011_gene1624	PcfJ-like protein	NA
UHGV-0139112_39	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0139112_39	Structural annotation	PF14284, NF008072	NA	NA
UHGV-0139112_40	PHROG	phrog_7445	NA	unknown function
UHGV-0139112_40	eggNOG-mapper	1232449.BAHV02000018_gene1541	PcfK-like protein	NA
UHGV-0139112_40	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0139112_41	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0139112_41	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0139112_41	UniRef90	UniRef90_A0A3E3EFM9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0139112_41	eggNOG-mapper	1211844.CBLM010000016_gene1505	Endodeoxyribonuclease RusA	NA
UHGV-0139112_41	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0139112_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0139112_41	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0139112_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0139112_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0139112_43	UniRef90	UniRef90_A0A3E3DY47	Single-stranded DNA-binding protein	NA
UHGV-0139112_43	eggNOG-mapper	428126.CLOSPI_02450	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0139112_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0139112_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0139112_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0139112_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0139112_43	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0139112_44	UniRef90	UniRef90_A0A3E3EFN5	Inhibitor_G39P domain-containing protein	NA
UHGV-0139112_44	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0139112_44	Structural annotation	PF11417	NA	NA
UHGV-0139112_45	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0139112_45	eggNOG-mapper	866895.HBHAL_1629	Replication initiation and membrane attachment	NA
UHGV-0139112_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0139112_45	Structural annotation	PF09681, MF_01177, NF033789, COG0640	NA	NA
UHGV-0139112_46	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0139112_46	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0139112_46	UniRef90	UniRef90_A0A2N5PKF9	Recombinase	NA
UHGV-0139112_46	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0139112_46	Pfam	PF03837	RecT family	RecT
UHGV-0139112_46	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0139112_46	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0139112_46	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0139112_47	PHROG	phrog_674	NA	unknown function
UHGV-0139112_47	UniRef90	UniRef90_A0A3E3EFR1	NA	NA
UHGV-0139112_47	Pfam	PF07083	NA	DUF1351
UHGV-0139112_47	Structural annotation	PF07083	NA	NA
UHGV-0139112_48	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139112_48	UniRef90	UniRef90_UPI000E4A07F3	YqaJ viral recombinase family protein	NA
UHGV-0139112_48	eggNOG-mapper	1211844.CBLM010000016_gene1516	YqaJ-like viral recombinase domain	NA
UHGV-0139112_48	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0139112_48	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0139112_48	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0139112_48	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0139112_52	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0139112_52	UniRef90	UniRef90_UPI000E3F9F20	ORF6C domain-containing protein	NA
UHGV-0139112_52	eggNOG-mapper	1235755.ANAM01000006_gene2351	BRO family, N-terminal domain	NA
UHGV-0139112_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0139112_52	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0139112_52	COG	COG3617	Prophage antirepressor	NA
UHGV-0139112_52	Structural annotation	PF02498, PF10552, TIGR02681, COG3617	NA	NA
UHGV-0139112_53	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0139112_55	PHROG	phrog_3202	NA	unknown function
UHGV-0139112_55	UniRef90	UniRef90_A0A1Y4R5Y7	YjzC family protein	NA
UHGV-0139112_55	eggNOG-mapper	445974.CLORAM_02964	YjzC-like protein	NA
UHGV-0139112_55	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0139112_55	Structural annotation	PF14168	NA	NA
UHGV-0139112_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0139112_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0139112_56	UniRef90	UniRef90_G9R0X9	HTH cro/C1-type domain-containing protein	NA
UHGV-0139112_56	eggNOG-mapper	471875.RUMLAC_01755	sequence-specific DNA binding	NA
UHGV-0139112_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139112_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0139112_56	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0139112_58	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0139112_58	PHROG	phrog_8810	NA	unknown function
UHGV-0139112_58	UniRef90	UniRef90_A0A829Z9K4	HTH LytTR-type domain-containing protein	NA
UHGV-0139112_58	eggNOG-mapper	397290.C810_04865	LytTr DNA-binding domain	NA
UHGV-0139112_58	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0139112_58	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0139112_58	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0139112_58	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0139112_59	UniRef90	UniRef90_A0A366U359	LysM domain	NA
UHGV-0139112_59	eggNOG-mapper	411470.RUMGNA_03228	NA	NA
UHGV-0139112_60	KOfam	K14059	int; integrase	NA
UHGV-0139112_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0139112_60	UniRef90	UniRef90_A0A3E3AGK4	Site-specific integrase	NA
UHGV-0139112_60	eggNOG-mapper	226185.EF_2546	Phage integrase family	NA
UHGV-0139112_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139112_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA