UHGV-0139140

Genome information

Genome length 27,237 bps

CDS count 45

Completeness 71.59% (medium-quality)

geNomad score 0.9655

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139140
vOTU ID	vOTU-015574
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_381862
BioSample	SAMN04158623
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9655
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.54
Jumbo phage	No

Genome content
Genome length	27,237 bps
GC content	36.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.29%
Average CDS length	567.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139140_4	PHROG	phrog_6616	tail protein	tail
UHGV-0139140_4	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0139140_5	PHROG	phrog_6616	tail protein	tail
UHGV-0139140_5	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0139140_6	PHROG	phrog_1194	NA	unknown function
UHGV-0139140_6	UniRef90	UniRef90_R6RCL6	Gp18	NA
UHGV-0139140_6	eggNOG-mapper	1395587.P364_0122015	NA	NA
UHGV-0139140_6	Pfam	PF20458	NA	DUF6711
UHGV-0139140_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0139140_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0139140_7	UniRef90	UniRef90_A0A1C6JI42	Phage-related protein	NA
UHGV-0139140_7	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0139140_7	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0139140_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0139140_8	PHROG	phrog_10292	NA	unknown function
UHGV-0139140_8	UniRef90	UniRef90_R6R348	TM2 domain protein	NA
UHGV-0139140_8	eggNOG-mapper	556261.HMPREF0240_02202	TM2 domain	NA
UHGV-0139140_8	Pfam	PF05154	TM2 domain	TM2
UHGV-0139140_8	COG	COG2314	NA	NA
UHGV-0139140_9	PHROG	phrog_8355	NA	unknown function
UHGV-0139140_9	UniRef90	UniRef90_UPI001F1300CC	bacteriophage Gp15 family protein	NA
UHGV-0139140_9	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0139140_10	PHROG	phrog_8300	NA	unknown function
UHGV-0139140_10	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0139140_11	PHROG	phrog_820	major tail protein	tail
UHGV-0139140_11	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0139140_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0139140_12	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0139140_12	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0139140_12	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-0139140_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0139140_12	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0139140_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0139140_13	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0139140_14	PHROG	phrog_8710	NA	unknown function
UHGV-0139140_14	eggNOG-mapper	1282664.H354_06676	NA	NA
UHGV-0139140_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0139140_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0139140_15	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0139140_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0139140_16	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-0139140_16	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0139140_17	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0139140_17	eggNOG-mapper	585501.HMPREF6123_0836	NA	NA
UHGV-0139140_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0139140_20	UniRef90	UniRef90_A0A416Q253	Minor capsid protein	NA
UHGV-0139140_20	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0139140_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0139140_20	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0139140_20	Structural annotation	PF06152	NA	NA
UHGV-0139140_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0139140_21	UniRef90	UniRef90_R6R978	Phage minor capsid protein	NA
UHGV-0139140_21	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0139140_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0139140_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0139140_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0139140_22	UniRef90	UniRef90_R6QSC6	Phage terminase large subunit PBSX family	NA
UHGV-0139140_22	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0139140_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0139140_22	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0139140_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0139140_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0139140_23	UniRef90	UniRef90_R6QUI1	Phage terminase small subunit	NA
UHGV-0139140_23	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0139140_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0139140_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0139140_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0139140_24	Structural annotation	TIGR01636	NA	NA
UHGV-0139140_25	PHROG	phrog_14853	NA	unknown function
UHGV-0139140_26	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-0139140_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0139140_26	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0139140_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0139140_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0139140_27	UniRef90	UniRef90_R6R2Y5	Endodeoxyribonuclease RusA	NA
UHGV-0139140_27	eggNOG-mapper	1415774.U728_752	Endodeoxyribonuclease RusA	NA
UHGV-0139140_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0139140_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0139140_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0139140_29	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0139140_29	UniRef90	UniRef90_R6R9A6	NA	NA
UHGV-0139140_29	eggNOG-mapper	1291050.JAGE01000001_gene2901	NA	NA
UHGV-0139140_29	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0139140_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0139140_29	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0139140_30	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0139140_30	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0139140_30	UniRef90	UniRef90_R6RYR2	Lactamase_B domain-containing protein	NA
UHGV-0139140_30	eggNOG-mapper	743719.PaelaDRAFT_5633	Metallo-beta-lactamase superfamily	NA
UHGV-0139140_30	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0139140_30	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0139140_30	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0139140_31	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0139140_31	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0139140_31	UniRef90	UniRef90_R6QSG7	Recombinational DNA repair protein RecT (Prophage associated)	NA
UHGV-0139140_31	eggNOG-mapper	1111134.HMPREF1253_0395	RecT family	NA
UHGV-0139140_31	Pfam	PF03837	RecT family	RecT
UHGV-0139140_31	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0139140_31	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0139140_31	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0139140_32	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0139140_32	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139140_32	UniRef90	UniRef90_A0A3D0M2C6	AAA_27 domain-containing protein	NA
UHGV-0139140_32	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-0139140_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0139140_32	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0139140_33	PHROG	phrog_3777	NA	unknown function
UHGV-0139140_33	eggNOG-mapper	1235797.C816_03984	NA	NA
UHGV-0139140_33	Pfam	PF12957	NA	DUF3846
UHGV-0139140_33	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0139140_33	Structural annotation	PF12957	NA	NA
UHGV-0139140_35	PHROG	phrog_989	NA	unknown function
UHGV-0139140_35	UniRef90	UniRef90_UPI00100BB664	transcriptional regulator	NA
UHGV-0139140_35	eggNOG-mapper	1540257.JQMW01000013_gene708	NA	NA
UHGV-0139140_36	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0139140_36	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0139140_36	UniRef90	UniRef90_R6QSH9	Helix-turn-helix	NA
UHGV-0139140_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139140_36	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0139140_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0139140_39	UniRef90	UniRef90_R6R313	NA	NA
UHGV-0139140_39	eggNOG-mapper	293826.Amet_0839	NA	NA
UHGV-0139140_39	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0139140_40	UniRef90	UniRef90_R6R9C1	HTH cro/C1-type domain-containing protein	NA
UHGV-0139140_40	eggNOG-mapper	718252.FP2_04820	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0139140_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0139140_40	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0139140_41	PHROG	phrog_1914	NA	unknown function
UHGV-0139140_41	UniRef90	UniRef90_UPI000D0F8E13	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0139140_41	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0139140_41	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0139140_41	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0139140_41	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0139140_42	PHROG	phrog_16228	NA	unknown function
UHGV-0139140_42	UniRef90	UniRef90_R6QUN6	Uma2 domain-containing protein	NA
UHGV-0139140_42	eggNOG-mapper	641112.ACOK01000094_gene992	Putative restriction endonuclease	NA
UHGV-0139140_42	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0139140_42	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0139140_42	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0139140_44	PHROG	phrog_5783	NA	unknown function
UHGV-0139140_44	UniRef90	UniRef90_R6RYT1	NYN domain-containing protein	NA
UHGV-0139140_44	eggNOG-mapper	196164.23492184	NYN domain	NA
UHGV-0139140_44	Pfam	PF01936	NYN domain	NYN
UHGV-0139140_44	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0139140_44	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0139140_45	KOfam	K14059	int; integrase	NA
UHGV-0139140_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0139140_45	UniRef90	UniRef90_R6R322	Phage integrase family protein	NA
UHGV-0139140_45	eggNOG-mapper	1449343.JQLQ01000002_gene667	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0139140_45	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0139140_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0139140_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139140_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0139140_45	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA