UHGV-0139296

Genome information

Genome length 28,262 bps

CDS count 42

Completeness 99.90% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139296
vOTU ID	vOTU-008827
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_357034
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.25
Jumbo phage	No

Genome content
Genome length	28,262 bps
GC content	38.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.72%
Average CDS length	627.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139296_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0139296_1	PHROG	phrog_291	endolysin	lysis
UHGV-0139296_1	UniRef90	UniRef90_UPI00189C009C	glycoside hydrolase family 25 protein	NA
UHGV-0139296_1	eggNOG-mapper	525309.HMPREF0494_0881	Glycosyl hydrolases family 25	NA
UHGV-0139296_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0139296_1	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0139296_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0139296_3	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0139296_3	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0139296_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0139296_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0139296_3	COG	COG4926	Phage-related protein	NA
UHGV-0139296_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0139296_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0139296_4	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0139296_4	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0139296_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0139296_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0139296_5	PHROG	phrog_23464	NA	unknown function
UHGV-0139296_5	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0139296_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0139296_5	Structural annotation	COG3941	NA	NA
UHGV-0139296_8	PHROG	phrog_885	major tail protein	tail
UHGV-0139296_8	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-0139296_8	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0139296_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0139296_9	Structural annotation	PF12691	NA	NA
UHGV-0139296_10	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0139296_10	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0139296_10	Structural annotation	TIGR01725	NA	NA
UHGV-0139296_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0139296_11	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0139296_11	eggNOG-mapper	768704.Desmer_4460	head-tail adaptor	NA
UHGV-0139296_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0139296_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0139296_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0139296_12	PHROG	phrog_5223	neck protein	connector
UHGV-0139296_12	UniRef90	UniRef90_UPI0019613678	head-tail connector protein	NA
UHGV-0139296_12	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0139296_12	Structural annotation	TIGR01560	NA	NA
UHGV-0139296_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0139296_13	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0139296_13	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0139296_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0139296_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0139296_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0139296_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0139296_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0139296_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0139296_14	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0139296_14	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0139296_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0139296_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0139296_14	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0139296_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0139296_15	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0139296_15	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0139296_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0139296_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0139296_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0139296_16	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-0139296_16	UniRef90	UniRef90_C2UHD7	Terminase	NA
UHGV-0139296_16	eggNOG-mapper	1444306.JFZC01000018_gene2194	Phage Terminase	NA
UHGV-0139296_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0139296_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0139296_16	Structural annotation	PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0139296_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0139296_17	UniRef90	UniRef90_UPI001B3C9001	terminase large subunit	NA
UHGV-0139296_17	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0139296_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0139296_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0139296_17	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0139296_18	PHROG	phrog_1066	NA	unknown function
UHGV-0139296_18	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0139296_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139296_19	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0139296_19	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0139296_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0139296_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0139296_20	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0139296_20	Structural annotation	TIGR01636	NA	NA
UHGV-0139296_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0139296_21	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0139296_21	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0139296_23	PHROG	phrog_824	NA	unknown function
UHGV-0139296_23	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0139296_23	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0139296_23	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0139296_23	Structural annotation	PF08774	NA	NA
UHGV-0139296_24	PHROG	phrog_30343	NA	unknown function
UHGV-0139296_24	UniRef90	UniRef90_UPI0019620485	GNAT family N-acetyltransferase	NA
UHGV-0139296_24	eggNOG-mapper	411473.RUMCAL_00285	NA	NA
UHGV-0139296_24	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0139296_25	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0139296_25	Structural annotation	PF15597	NA	NA
UHGV-0139296_28	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0139296_28	UniRef90	UniRef90_A0A2N0ULX9	Methyltransf_11 domain-containing protein	NA
UHGV-0139296_28	eggNOG-mapper	1284352.AOIG01000022_gene3791	methyltransferase	NA
UHGV-0139296_28	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0139296_28	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0139296_28	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0139296_28	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0139296_29	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139296_29	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0139296_29	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0139296_29	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0139296_29	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0139296_31	PHROG	phrog_15609	NA	unknown function
UHGV-0139296_31	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0139296_31	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0139296_31	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0139296_32	PHROG	phrog_8470	NA	unknown function
UHGV-0139296_32	UniRef90	UniRef90_A0A1M7BII1	PcfJ-like protein	NA
UHGV-0139296_32	eggNOG-mapper	397288.C806_03897	PcfJ-like protein	NA
UHGV-0139296_32	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0139296_32	Structural annotation	PF14284	NA	NA
UHGV-0139296_38	UniRef90	UniRef90_A0A374DVN3	DNA-binding protein	NA
UHGV-0139296_38	eggNOG-mapper	411902.CLOBOL_02554	NA	NA
UHGV-0139296_39	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0139296_39	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0139296_39	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0139296_39	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0139296_40	PHROG	phrog_1914	NA	unknown function
UHGV-0139296_40	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0139296_40	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0139296_40	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0139296_40	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0139296_40	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0139296_41	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0139296_42	KOfam	K14059	int; integrase	NA
UHGV-0139296_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0139296_42	UniRef90	UniRef90_UPI00164B8B01	site-specific integrase	NA
UHGV-0139296_42	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0139296_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139296_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0139296_42	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA