UHGV-0139322

Genome information

Genome length 33,758 bps

CDS count 63

Completeness 89.54% (medium-quality)

geNomad score 0.9679

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139322
vOTU ID	vOTU-034726
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_368362
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9679
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.37
Jumbo phage	No

Genome content
Genome length	33,758 bps
GC content	27.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	92.64%
Average CDS length	500.95 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139322_3	Structural annotation	PF20385	NA	NA
UHGV-0139322_4	Structural annotation	PF11372	NA	NA
UHGV-0139322_6	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0139322_6	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0139322_6	UniRef90	UniRef90_R5A158	DnaD domain protein	NA
UHGV-0139322_6	eggNOG-mapper	1123299.AUKZ01000018_gene209	Replication initiation and membrane attachment	NA
UHGV-0139322_6	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0139322_6	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0139322_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0139322_6	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0139322_7	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0139322_7	UniRef90	UniRef90_R5A614	Inhibitor_G39P domain-containing protein	NA
UHGV-0139322_7	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0139322_7	Structural annotation	PF11417, PF08209	NA	NA
UHGV-0139322_9	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0139322_9	UniRef90	UniRef90_R5A0M1	Erf family protein	NA
UHGV-0139322_9	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0139322_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-0139322_9	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0139322_10	PHROG	phrog_674	NA	unknown function
UHGV-0139322_10	UniRef90	UniRef90_A0A7X7EMF4	NA	NA
UHGV-0139322_10	eggNOG-mapper	754027.HMPREF9554_00708	NA	NA
UHGV-0139322_10	Pfam	PF07083	NA	DUF1351
UHGV-0139322_10	Structural annotation	PF07083	NA	NA
UHGV-0139322_13	eggNOG-mapper	1123263.AUKY01000096_gene1822	C-5 cytosine-specific DNA methylase	NA
UHGV-0139322_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0139322_14	eggNOG-mapper	1497679.EP56_05680	NA	NA
UHGV-0139322_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0139322_15	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0139322_15	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-0139322_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0139322_16	PHROG	phrog_1123	NA	unknown function
UHGV-0139322_16	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-0139322_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0139322_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0139322_17	UniRef90	UniRef90_R5A412	Single-stranded DNA-binding protein	NA
UHGV-0139322_17	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-0139322_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0139322_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0139322_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0139322_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0139322_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0139322_21	Structural annotation	PF09947	NA	NA
UHGV-0139322_34	Structural annotation	PF16360	NA	NA
UHGV-0139322_35	PHROG	phrog_20735	NA	unknown function
UHGV-0139322_35	UniRef90	UniRef90_R5A140	RNA_ligase domain-containing protein	NA
UHGV-0139322_35	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-0139322_35	Structural annotation	PF09414, MF_04150, TIGR01209, COG1423	NA	NA
UHGV-0139322_36	Structural annotation	PF15456	NA	NA
UHGV-0139322_38	PHROG	phrog_2412	NA	unknown function
UHGV-0139322_38	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-0139322_38	eggNOG-mapper	1122981.AUME01000026_gene531	NA	NA
UHGV-0139322_39	UniRef90	UniRef90_R5A0K2	Putative phage terminase large subunit	NA
UHGV-0139322_39	eggNOG-mapper	645991.Sgly_0335	Phage terminase, large subunit, PBSX family	NA
UHGV-0139322_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0139322_39	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0139322_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0139322_40	UniRef90	UniRef90_R5A3Z5	Putative phage minor capsid protein	NA
UHGV-0139322_40	eggNOG-mapper	1117108.PAALTS15_13582	NA	NA
UHGV-0139322_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0139322_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0139322_42	UniRef90	UniRef90_R5A5Z0	Putative phage minor capsid protein	NA
UHGV-0139322_42	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-0139322_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0139322_42	COG	COG2369	NA	NA
UHGV-0139322_42	Structural annotation	PF06152	NA	NA
UHGV-0139322_45	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0139322_45	Structural annotation	MF_02110	NA	NA
UHGV-0139322_46	PHROG	phrog_422	major head protein	head and packaging
UHGV-0139322_46	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0139322_46	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0139322_46	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0139322_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0139322_49	eggNOG-mapper	1391647.AVSV01000003_gene1810	NA	NA
UHGV-0139322_50	PHROG	phrog_8710	NA	unknown function
UHGV-0139322_50	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0139322_50	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-0139322_50	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0139322_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0139322_51	UniRef90	UniRef90_UPI00058FDD53	minor capsid protein	NA
UHGV-0139322_51	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0139322_52	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0139322_52	UniRef90	UniRef90_UPI001C301760	minor capsid protein	NA
UHGV-0139322_52	eggNOG-mapper	394503.Ccel_3286	NA	NA
UHGV-0139322_52	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0139322_52	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0139322_53	PHROG	phrog_820	major tail protein	tail
UHGV-0139322_53	UniRef90	UniRef90_R6DLA9	Conserved domain protein	NA
UHGV-0139322_53	eggNOG-mapper	658659.HMPREF0983_03301	NA	NA
UHGV-0139322_53	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0139322_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0139322_54	PHROG	phrog_8300	NA	unknown function
UHGV-0139322_54	eggNOG-mapper	1507.HMPREF0262_01185	NA	NA
UHGV-0139322_54	Structural annotation	PF06854	NA	NA
UHGV-0139322_55	PHROG	phrog_8355	NA	unknown function
UHGV-0139322_55	UniRef90	UniRef90_A0A1M6RZ32	Bacteriophage Gp15 protein	NA
UHGV-0139322_55	eggNOG-mapper	1123263.AUKY01000051_gene1072	NA	NA
UHGV-0139322_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0139322_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0139322_56	UniRef90	UniRef90_R5A122	ETS domain-containing protein	NA
UHGV-0139322_56	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0139322_56	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0139322_57	PHROG	phrog_1194	NA	unknown function
UHGV-0139322_57	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0139322_58	PHROG	phrog_6616	tail protein	tail
UHGV-0139322_58	eggNOG-mapper	1305708.M9Q2I5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0139322_58	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0139322_59	PHROG	phrog_372	tail protein	tail
UHGV-0139322_59	UniRef90	UniRef90_R7FHU8	Tail protein	NA
UHGV-0139322_59	eggNOG-mapper	658088.HMPREF0987_01104	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0139322_59	Pfam	PF05895	NA	DUF859
UHGV-0139322_59	COG	COG4675	Phage tail collar domain	NA
UHGV-0139322_59	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0139322_62	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0139322_62	PHROG	phrog_894	endolysin	lysis
UHGV-0139322_62	UniRef90	UniRef90_A0A843H2N1	Peptidoglycan-binding protein	NA
UHGV-0139322_62	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0139322_62	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0139322_62	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0139322_62	COG	COG3108	NA	NA
UHGV-0139322_62	Structural annotation	PF08291, PF01471, COG3108	NA	NA
UHGV-0139322_63	PHROG	phrog_7566	NA	unknown function
UHGV-0139322_63	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA