UHGV-0139443

Genome information

Genome length 43,267 bps

CDS count 69

Completeness 92.72% (high-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139443
vOTU ID	vOTU-075606
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_374716
BioSample	SAMN03418286
Country	Italy
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.72% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21
Jumbo phage	No

Genome content
Genome length	43,267 bps
GC content	45.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	86.93%
Average CDS length	548.61 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139443_1	eggNOG-mapper	1262914.BN533_01961	Product inferred by homology to UniProt	NA
UHGV-0139443_2	KOfam	K14059	int; integrase	NA
UHGV-0139443_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0139443_2	UniRef90	UniRef90_R6J9I2	Integrase family protein	NA
UHGV-0139443_2	eggNOG-mapper	1262914.BN533_01960	Belongs to the 'phage' integrase family	NA
UHGV-0139443_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139443_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0139443_2	Structural annotation	PF00589, PF13102, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0139443_4	PHROG	phrog_5978	NA	unknown function
UHGV-0139443_4	UniRef90	UniRef90_A0A316S9Y1	Addiction module protein	NA
UHGV-0139443_4	eggNOG-mapper	118005.AWNK01000004_gene1058	Filamentation induced by cAMP protein fic	NA
UHGV-0139443_4	Pfam	PF13784	Fic/DOC family N-terminal	Fic_N
UHGV-0139443_4	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0139443_4	Pfam	PF21248	Protein adenylyltransferase SoFic-like, C-terminal domain	SoFic-like_C
UHGV-0139443_4	COG	COG3177	Fic family protein	NA
UHGV-0139443_4	Structural annotation	PF02661, PF13784, PF21248, MF_01819, NF040876, COG3177	NA	NA
UHGV-0139443_5	PHROG	phrog_19315	NA	unknown function
UHGV-0139443_5	UniRef90	UniRef90_UPI0006910087	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0139443_5	eggNOG-mapper	386415.NT01CX_2202	NA	NA
UHGV-0139443_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0139443_5	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0139443_5	COG	COG1592	Rubrerythrin	NA
UHGV-0139443_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0139443_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0139443_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0139443_6	UniRef90	UniRef90_A0A120KRD9	HTH cro/C1-type domain-containing protein	NA
UHGV-0139443_6	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0139443_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0139443_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139443_6	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0139443_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0139443_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0139443_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0139443_7	UniRef90	UniRef90_H3K591	HTH cro/C1-type domain-containing protein	NA
UHGV-0139443_7	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0139443_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139443_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0139443_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0139443_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0139443_8	UniRef90	UniRef90_R6WX82	Prophage antirepressor	NA
UHGV-0139443_8	eggNOG-mapper	557436.Lreu_0803	BRO family, N-terminal domain	NA
UHGV-0139443_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0139443_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0139443_8	COG	COG3617	Prophage antirepressor	NA
UHGV-0139443_8	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0139443_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0139443_10	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0139443_10	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0139443_12	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0139443_12	UniRef90	UniRef90_R6WX74	Siphovirus family protein	NA
UHGV-0139443_12	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0139443_12	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0139443_12	Structural annotation	PF05565	NA	NA
UHGV-0139443_13	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139443_13	UniRef90	UniRef90_UPI001D07B780	RAD52 family DNA repair protein	NA
UHGV-0139443_13	eggNOG-mapper	69279.BG36_21015	protein involved in exopolysaccharide biosynthesis	NA
UHGV-0139443_13	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0139443_13	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0139443_14	PHROG	phrog_7566	NA	unknown function
UHGV-0139443_14	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0139443_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0139443_15	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0139443_15	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0139443_15	Structural annotation	PF05772	NA	NA
UHGV-0139443_16	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0139443_16	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0139443_16	eggNOG-mapper	272562.CA_C1934	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0139443_16	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0139443_16	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0139443_16	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0139443_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0139443_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0139443_17	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0139443_17	eggNOG-mapper	796942.HMPREF9623_00441	NA	NA
UHGV-0139443_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0139443_17	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0139443_17	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0139443_17	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0139443_18	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139443_18	eggNOG-mapper	60520.HR47_11980	NA	NA
UHGV-0139443_22	PHROG	phrog_236	nucleotide kinase	other
UHGV-0139443_22	UniRef90	UniRef90_U7UMX2	PF11753 family protein	NA
UHGV-0139443_22	eggNOG-mapper	1111454.HMPREF1250_1038	NA	NA
UHGV-0139443_22	Pfam	PF11753	NA	DUF3310
UHGV-0139443_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0139443_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0139443_24	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0139443_24	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0139443_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0139443_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0139443_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0139443_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0139443_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0139443_26	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0139443_26	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0139443_26	eggNOG-mapper	1511.CLOST_1536	NA	NA
UHGV-0139443_26	Pfam	PF06356	NA	DUF1064
UHGV-0139443_26	Structural annotation	PF06356	NA	NA
UHGV-0139443_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0139443_28	UniRef90	UniRef90_R6WQ64	Sigma-70 region 4 domain protein	NA
UHGV-0139443_28	eggNOG-mapper	1235799.C818_01032	NA	NA
UHGV-0139443_28	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0139443_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0139443_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0139443_29	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-0139443_30	UniRef90	UniRef90_R6X5I6	PhageMetallopep domain-containing protein	NA
UHGV-0139443_30	eggNOG-mapper	926561.KB900624_gene2638	NA	NA
UHGV-0139443_30	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0139443_30	Structural annotation	PF18894, COG4900	NA	NA
UHGV-0139443_32	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0139443_32	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0139443_32	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0139443_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0139443_32	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0139443_32	COG	COG5410	NA	NA
UHGV-0139443_32	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0139443_33	PHROG	phrog_145	portal protein	head and packaging
UHGV-0139443_33	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0139443_33	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0139443_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0139443_34	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0139443_34	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0139443_34	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0139443_36	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0139443_36	Structural annotation	PF06810	NA	NA
UHGV-0139443_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-0139443_37	UniRef90	UniRef90_R6WWZ7	Gp7	NA
UHGV-0139443_37	eggNOG-mapper	1430331.EP10_10365	NA	NA
UHGV-0139443_37	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0139443_37	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0139443_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0139443_39	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0139443_39	eggNOG-mapper	568816.Acin_1234	NA	NA
UHGV-0139443_39	Structural annotation	TIGR01725	NA	NA
UHGV-0139443_40	eggNOG-mapper	1111454.HMPREF1250_1049	NA	NA
UHGV-0139443_41	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0139443_41	eggNOG-mapper	1111454.HMPREF1250_1050	NA	NA
UHGV-0139443_41	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0139443_42	PHROG	phrog_1407	major tail protein	tail
UHGV-0139443_42	UniRef90	UniRef90_A0A380NJ51	Predicted secreted protein	NA
UHGV-0139443_42	eggNOG-mapper	568816.Acin_1231	Phage tail tube protein	NA
UHGV-0139443_42	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0139443_42	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0139443_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0139443_43	Structural annotation	PF11836	NA	NA
UHGV-0139443_45	PHROG	phrog_12798	NA	unknown function
UHGV-0139443_45	UniRef90	UniRef90_R6WQ18	Tape measure domain-containing protein	NA
UHGV-0139443_45	eggNOG-mapper	2754.EH55_13250	tape measure	NA
UHGV-0139443_45	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0139443_45	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0139443_45	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0139443_45	Structural annotation	PF20155, MF_04138, TIGR01760, COG3941	NA	NA
UHGV-0139443_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0139443_46	UniRef90	UniRef90_UPI0015588CAB	phage tail family protein	NA
UHGV-0139443_46	eggNOG-mapper	568816.Acin_1906	Phage tail protein	NA
UHGV-0139443_46	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-0139443_47	eggNOG-mapper	568816.Acin_1905	NA	NA
UHGV-0139443_47	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0139443_48	PHROG	phrog_13336	NA	unknown function
UHGV-0139443_48	eggNOG-mapper	2754.EH55_13265	NA	NA
UHGV-0139443_49	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0139443_49	Structural annotation	PF14301	NA	NA
UHGV-0139443_50	eggNOG-mapper	665956.HMPREF1032_00696	NA	NA
UHGV-0139443_50	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0139443_51	PHROG	phrog_31538	NA	unknown function
UHGV-0139443_51	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0139443_52	PHROG	phrog_13589	NA	unknown function
UHGV-0139443_52	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0139443_53	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0139443_56	PHROG	phrog_2837	tail protein	tail
UHGV-0139443_56	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0139443_56	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0139443_56	Pfam	PF14301	NA	DUF4376
UHGV-0139443_56	Structural annotation	PF14301	NA	NA
UHGV-0139443_57	UniRef90	UniRef90_UPI001EDD344B	phage holin family protein	NA
UHGV-0139443_57	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-0139443_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0139443_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0139443_58	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0139443_58	Structural annotation	PF21277	NA	NA
UHGV-0139443_66	Structural annotation	PF15597	NA	NA
UHGV-0139443_69	KOfam	K07576	K07576; metallo-beta-lactamase family protein	NA
UHGV-0139443_69	PHROG	phrog_36352	NA	unknown function
UHGV-0139443_69	UniRef90	UniRef90_A0A1Q6R3I3	MBL fold hydrolase	NA
UHGV-0139443_69	eggNOG-mapper	626939.HMPREF9443_00087	Metallo-beta-lactamase domain protein	NA
UHGV-0139443_69	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0139443_69	Pfam	PF10996	Beta-Casp domain	Beta-Casp
UHGV-0139443_69	Pfam	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain	RMMBL
UHGV-0139443_69	COG	COG1236	RNA processing exonuclease, beta-lactamase fold, Cft2 family	NA