UHGV-0139555

Genome information

Genome length 34,370 bps

CDS count 50

Completeness 96.00% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139555
vOTU ID	vOTU-075236
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_383333
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.00% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.5
Jumbo phage	No

Genome content
Genome length	34,370 bps
GC content	43.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	89.66%
Average CDS length	619.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139555_1	eggNOG-mapper	411461.DORFOR_01184	NA	NA
UHGV-0139555_1	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0139555_3	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0139555_3	PHROG	phrog_11157	NA	unknown function
UHGV-0139555_3	UniRef90	UniRef90_UPI0006C53CD4	Ig-like domain-containing protein	NA
UHGV-0139555_3	eggNOG-mapper	742765.HMPREF9457_03368	NA	NA
UHGV-0139555_3	Pfam	PF17957	Bacterial Ig domain	Big_7
UHGV-0139555_3	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0139555_3	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0139555_3	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0139555_5	PHROG	phrog_30034	NA	unknown function
UHGV-0139555_5	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0139555_5	eggNOG-mapper	665950.HMPREF1025_02518	NA	NA
UHGV-0139555_6	PHROG	phrog_13141	NA	unknown function
UHGV-0139555_6	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0139555_6	eggNOG-mapper	411460.RUMTOR_02097	NA	NA
UHGV-0139555_6	Structural annotation	PF20747, PF17900	NA	NA
UHGV-0139555_7	PHROG	phrog_538	minor tail protein	tail
UHGV-0139555_7	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0139555_7	eggNOG-mapper	742765.HMPREF9457_03374	NA	NA
UHGV-0139555_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0139555_7	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0139555_8	eggNOG-mapper	742723.HMPREF9477_00896	NA	NA
UHGV-0139555_8	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0139555_9	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0139555_9	UniRef90	UniRef90_A0A828SZM0	PhageMin_Tail domain-containing protein	NA
UHGV-0139555_9	eggNOG-mapper	411468.CLOSCI_00278	phage tail tape measure protein	NA
UHGV-0139555_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0139555_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0139555_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0139555_9	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0139555_10	Structural annotation	PF16462	NA	NA
UHGV-0139555_11	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0139555_11	eggNOG-mapper	411468.CLOSCI_00281	NA	NA
UHGV-0139555_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0139555_12	Structural annotation	PF12691	NA	NA
UHGV-0139555_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0139555_13	UniRef90	UniRef90_UPI001C3BB077	HK97 gp10 family phage protein	NA
UHGV-0139555_13	eggNOG-mapper	411468.CLOSCI_00283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0139555_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0139555_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0139555_14	UniRef90	UniRef90_A0A828SZY0	Phage head-tail adaptor	NA
UHGV-0139555_14	eggNOG-mapper	411468.CLOSCI_00284	NA	NA
UHGV-0139555_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0139555_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0139555_15	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0139555_15	UniRef90	UniRef90_UPI000C75BAD8	phage head-tail connector protein	NA
UHGV-0139555_15	eggNOG-mapper	1123405.AUMM01000039_gene148	Phage gp6-like head-tail connector protein	NA
UHGV-0139555_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0139555_15	Structural annotation	PF05135	NA	NA
UHGV-0139555_16	PHROG	phrog_267	major head protein	head and packaging
UHGV-0139555_16	UniRef90	UniRef90_A0A7V8IA85	Phage coat protein gp6	NA
UHGV-0139555_16	eggNOG-mapper	1321778.HMPREF1982_03550	P22 coat protein-protein 5 domain protein	NA
UHGV-0139555_16	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0139555_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0139555_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0139555_17	UniRef90	UniRef90_UPI000C76E206	phage scaffolding protein	NA
UHGV-0139555_17	eggNOG-mapper	1209989.TepiRe1_1150	Phage minor structural protein GP20	NA
UHGV-0139555_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0139555_17	Structural annotation	PF06810	NA	NA
UHGV-0139555_20	PHROG	phrog_4728	head morphogenesis	head and packaging
UHGV-0139555_20	UniRef90	UniRef90_A0A828SR54	Phage_Mu_F domain-containing protein	NA
UHGV-0139555_20	eggNOG-mapper	411468.CLOSCI_00291	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0139555_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0139555_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0139555_20	COG	COG2369	NA	NA
UHGV-0139555_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0139555_21	UniRef90	UniRef90_A0A828SVT3	Phage portal protein	NA
UHGV-0139555_21	eggNOG-mapper	1209989.TepiRe1_1145	phage portal protein, SPP1	NA
UHGV-0139555_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0139555_21	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0139555_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0139555_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0139555_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0139555_22	UniRef90	UniRef90_A0A828SUY2	Phage terminase large subunit	NA
UHGV-0139555_22	eggNOG-mapper	610130.Closa_1390	Terminase RNAseH like domain	NA
UHGV-0139555_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0139555_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0139555_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0139555_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0139555_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0139555_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0139555_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0139555_23	UniRef90	UniRef90_A0A1Y4RLJ9	Terminase small subunit	NA
UHGV-0139555_23	eggNOG-mapper	476272.RUMHYD_02844	Terminase Small Subunit	NA
UHGV-0139555_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0139555_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0139555_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0139555_24	eggNOG-mapper	411460.RUMTOR_02083	NA	NA
UHGV-0139555_25	Structural annotation	PF14524, NF041178	NA	NA
UHGV-0139555_26	eggNOG-mapper	1235799.C818_04214	NA	NA
UHGV-0139555_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0139555_27	UniRef90	UniRef90_UPI001D09763E	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0139555_27	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-0139555_27	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0139555_27	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0139555_28	PHROG	phrog_30671	NA	unknown function
UHGV-0139555_28	UniRef90	UniRef90_A0A6I3QIW7	DNA-binding response regulator	NA
UHGV-0139555_29	PHROG	phrog_15077	NA	unknown function
UHGV-0139555_29	UniRef90	UniRef90_A0A354J797	RNA_pol_A_CTD domain-containing protein	NA
UHGV-0139555_29	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0139555_29	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0139555_30	eggNOG-mapper	1235792.C808_05406	NA	NA
UHGV-0139555_30	Structural annotation	MF_00773, NF041909, COG2888	NA	NA
UHGV-0139555_31	PHROG	phrog_23374	NA	unknown function
UHGV-0139555_32	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0139555_32	UniRef90	UniRef90_A0A1C5YVP9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0139555_32	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0139555_32	Pfam	PF06048	NA	DUF927
UHGV-0139555_32	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0139555_32	COG	COG5519	NA	NA
UHGV-0139555_32	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0139555_33	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0139555_33	PHROG	phrog_11992	NA	unknown function
UHGV-0139555_33	UniRef90	UniRef90_A5KP85	CHC2 zinc finger domain protein	NA
UHGV-0139555_33	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0139555_33	PADLOC	drt-UG29	DRT	DRT
UHGV-0139555_33	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0139555_33	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0139555_33	Structural annotation	PF01807	NA	NA
UHGV-0139555_34	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0139555_34	UniRef90	UniRef90_A5KP84	ERCC4 domain-containing protein	NA
UHGV-0139555_34	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0139555_34	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0139555_34	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0139555_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0139555_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0139555_35	UniRef90	UniRef90_A5KP83	Single-stranded DNA-binding protein	NA
UHGV-0139555_35	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0139555_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0139555_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0139555_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0139555_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0139555_35	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0139555_36	PHROG	phrog_21649	NA	unknown function
UHGV-0139555_36	UniRef90	UniRef90_UPI001D0DD6FE	ERF family protein	NA
UHGV-0139555_36	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0139555_36	Pfam	PF04404	ERF superfamily	ERF
UHGV-0139555_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0139555_36	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0139555_37	PHROG	phrog_674	NA	unknown function
UHGV-0139555_37	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0139555_37	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0139555_37	Pfam	PF07083	NA	DUF1351
UHGV-0139555_37	Structural annotation	PF07083	NA	NA
UHGV-0139555_38	PHROG	phrog_3777	NA	unknown function
UHGV-0139555_38	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-0139555_38	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0139555_38	Pfam	PF12957	NA	DUF3846
UHGV-0139555_38	Structural annotation	PF12957	NA	NA
UHGV-0139555_40	PHROG	phrog_22934	NA	unknown function
UHGV-0139555_44	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0139555_44	UniRef90	UniRef90_F3AXV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0139555_44	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0139555_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139555_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0139555_44	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0139555_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0139555_45	UniRef90	UniRef90_F3AXV8	HTH cro/C1-type domain-containing protein	NA
UHGV-0139555_45	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0139555_45	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0139555_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0139555_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0139555_46	PHROG	phrog_20886	NA	unknown function
UHGV-0139555_46	eggNOG-mapper	665950.HMPREF1025_02563	NA	NA
UHGV-0139555_46	Structural annotation	PF06114	NA	NA
UHGV-0139555_47	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0139555_47	UniRef90	UniRef90_A0A174C5C9	PemK-like protein	NA
UHGV-0139555_47	eggNOG-mapper	665950.HMPREF1025_02564	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0139555_47	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0139555_48	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0139555_48	PHROG	phrog_8036	NA	unknown function
UHGV-0139555_48	UniRef90	UniRef90_A0A174C9Y4	DNA damage-inducible protein D	NA
UHGV-0139555_48	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0139555_48	AcrCatalog	cluster_17589	NA	NA
UHGV-0139555_48	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0139555_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0139555_48	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0139555_48	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0139555_48	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0139555_49	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0139555_49	PHROG	phrog_95	integrase	integration and excision
UHGV-0139555_49	UniRef90	UniRef90_A7B6L4	Resolvase, N-terminal domain protein	NA
UHGV-0139555_49	eggNOG-mapper	665950.HMPREF1025_02566	Resolvase, N terminal domain	NA
UHGV-0139555_49	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0139555_49	Pfam	PF07508	Recombinase	Recombinase
UHGV-0139555_49	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0139555_49	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0139555_49	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0139555_50	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0139555_50	PHROG	phrog_7573	NA	unknown function
UHGV-0139555_50	UniRef90	UniRef90_A0A415RWZ5	Manganese catalase family protein	NA
UHGV-0139555_50	eggNOG-mapper	665950.HMPREF1025_02567	Manganese containing catalase	NA
UHGV-0139555_50	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0139555_50	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA