UHGV-0139601

Genome information

Genome length 35,646 bps

CDS count 43

Completeness 86.43% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139601
vOTU ID	vOTU-031388
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_369681
BioSample	SAMN03281016
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.3
Jumbo phage	No

Genome content
Genome length	35,646 bps
GC content	51.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.30%
Average CDS length	767.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139601_1	PHROG	phrog_2536	Rz-like spanin	lysis
UHGV-0139601_1	eggNOG-mapper	637910.ROD_10412	NA	NA
UHGV-0139601_2	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0139601_2	PHROG	phrog_7	endolysin	lysis
UHGV-0139601_2	UniRef90	UniRef90_A0A2X3EHT7	Lysozyme	NA
UHGV-0139601_2	eggNOG-mapper	399742.Ent638_2248	Phage lysozyme	NA
UHGV-0139601_2	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0139601_2	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0139601_2	HAMAP	MF_04110	Endolysin	NA
UHGV-0139601_2	Structural annotation	MF_04136, COG3772	NA	NA
UHGV-0139601_3	PHROG	phrog_9876	holin	lysis
UHGV-0139601_3	UniRef90	UniRef90_UPI0009BA979B	class II holin family protein	NA
UHGV-0139601_3	eggNOG-mapper	1005994.GTGU_01414	lysis protein S	NA
UHGV-0139601_3	Pfam	PF04971	Bacteriophage P21 holin S	Phage_holin_2_1
UHGV-0139601_3	Structural annotation	PF04971	NA	NA
UHGV-0139601_4	PHROG	phrog_1762	NA	unknown function
UHGV-0139601_4	UniRef90	UniRef90_UPI0015C4422F	NA	NA
UHGV-0139601_4	eggNOG-mapper	261292.Nit79A3_2524	NA	NA
UHGV-0139601_4	Pfam	PF11185	NA	DUF2971
UHGV-0139601_6	PHROG	phrog_20911	tail spike protein	tail
UHGV-0139601_6	UniRef90	UniRef90_UPI00069A7450	phage tail fiber protein	NA
UHGV-0139601_6	eggNOG-mapper	1229485.AMYV01000003_gene2238	lipolytic protein G-D-S-L family	NA
UHGV-0139601_6	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0139601_6	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0139601_6	Structural annotation	PF03906	NA	NA
UHGV-0139601_7	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0139601_7	UniRef90	UniRef90_A0A6P1UTP0	Phage terminase large subunit	NA
UHGV-0139601_7	eggNOG-mapper	1005994.GTGU_01417	chromosome segregation	NA
UHGV-0139601_7	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0139601_7	COG	COG5410	NA	NA
UHGV-0139601_7	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5323	NA	NA
UHGV-0139601_8	PHROG	phrog_9277	NA	unknown function
UHGV-0139601_8	eggNOG-mapper	598467.BrE312_2692	NA	NA
UHGV-0139601_9	PHROG	phrog_8033	NA	unknown function
UHGV-0139601_10	PHROG	phrog_16310	NA	unknown function
UHGV-0139601_10	eggNOG-mapper	1005994.GTGU_01420	NA	NA
UHGV-0139601_10	Structural annotation	MF_04121	NA	NA
UHGV-0139601_11	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0139601_11	PHROG	phrog_1044	endolysin	lysis
UHGV-0139601_11	UniRef90	UniRef90_UPI0019801268	transglycosylase SLT domain-containing protein	NA
UHGV-0139601_11	eggNOG-mapper	1005994.GTGU_01421	Transglycosylase SLT domain	NA
UHGV-0139601_11	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0139601_11	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0139601_12	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0139601_12	eggNOG-mapper	343509.SG1192	NA	NA
UHGV-0139601_12	Structural annotation	PF09486	NA	NA
UHGV-0139601_13	KOfam	K24217	mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]	NA
UHGV-0139601_13	PHROG	phrog_1249	acetyltransferase	other
UHGV-0139601_13	UniRef90	UniRef90_UPI001EF5FCE0	GNAT family N-acetyltransferase	NA
UHGV-0139601_13	eggNOG-mapper	343509.SG1191	Acetyltransferase (GNAT) family	NA
UHGV-0139601_13	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0139601_13	COG	COG1247	L-amino acid N-acyltransferase MnaT	NA
UHGV-0139601_13	Structural annotation	PF13527, MF_02210, NF000021, COG0456	NA	NA
UHGV-0139601_14	PHROG	phrog_376	tail protein	tail
UHGV-0139601_14	eggNOG-mapper	1005994.GTGU_01424	NA	NA
UHGV-0139601_14	Structural annotation	PF11134, MF_00923, NF008351, COG5276	NA	NA
UHGV-0139601_15	PHROG	phrog_394	tail protein	tail
UHGV-0139601_15	eggNOG-mapper	1005994.GTGU_01425	NA	NA
UHGV-0139601_15	Structural annotation	PF17212	NA	NA
UHGV-0139601_16	PHROG	phrog_3437	major head protein	head and packaging
UHGV-0139601_16	UniRef90	UniRef90_UPI000424618E	phage capsid protein	NA
UHGV-0139601_16	eggNOG-mapper	343509.SG1188	NA	NA
UHGV-0139601_16	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0139601_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0139601_17	PHROG	phrog_3742	NA	unknown function
UHGV-0139601_17	UniRef90	UniRef90_A0A5J6B4M5	Endoprotease	NA
UHGV-0139601_17	eggNOG-mapper	1005994.GTGU_01427	NA	NA
UHGV-0139601_18	PHROG	phrog_5977	NA	unknown function
UHGV-0139601_18	eggNOG-mapper	1005994.GTGU_01428	NA	NA
UHGV-0139601_19	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0139601_19	UniRef90	UniRef90_A0A2J4VV04	Phage tail protein	NA
UHGV-0139601_19	eggNOG-mapper	1005994.GTGU_01429	Bacteriophage head to tail connecting protein	NA
UHGV-0139601_19	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0139601_19	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0139601_20	PHROG	phrog_9015	NA	unknown function
UHGV-0139601_20	eggNOG-mapper	1005994.GTGU_01430	NA	NA
UHGV-0139601_21	PHROG	phrog_17476	NA	unknown function
UHGV-0139601_21	eggNOG-mapper	2342.SOPEG_1816	NA	NA
UHGV-0139601_22	PHROG	phrog_16553	transcriptional repressor	transcription regulation
UHGV-0139601_22	UniRef90	UniRef90_A0A5S4UJ76	Helix-turn-helix transcriptional regulator	NA
UHGV-0139601_22	eggNOG-mapper	2342.SOPEG_1041	NA	NA
UHGV-0139601_23	PHROG	phrog_1588	NA	unknown function
UHGV-0139601_23	UniRef90	UniRef90_UPI00111B6328	Ref family recombination enhancement nuclease	NA
UHGV-0139601_23	eggNOG-mapper	471874.PROSTU_02124	NA	NA
UHGV-0139601_23	Pfam	PF16786	Recombination enhancement, RecA-dependent nuclease	RecA_dep_nuc
UHGV-0139601_23	Structural annotation	PF16786	NA	NA
UHGV-0139601_24	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0139601_24	UniRef90	UniRef90_A0A1Q8YNN0	NA	NA
UHGV-0139601_24	eggNOG-mapper	1080067.BAZH01000011_gene678	NA	NA
UHGV-0139601_24	Pfam	PF07105	NA	DUF1367
UHGV-0139601_24	Structural annotation	PF07105	NA	NA
UHGV-0139601_25	PHROG	phrog_340	NA	unknown function
UHGV-0139601_25	eggNOG-mapper	598467.BrE312_2712	NA	NA
UHGV-0139601_27	PHROG	phrog_14996	NA	unknown function
UHGV-0139601_28	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0139601_28	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0139601_28	UniRef90	UniRef90_A0A2X3ELL4	Adenine-specific DNA methyltransferase	NA
UHGV-0139601_28	eggNOG-mapper	1080067.BAZH01000011_gene677	Belongs to the MT-A70-like family	NA
UHGV-0139601_28	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0139601_28	Pfam	PF05063	MT-A70	MT-A70
UHGV-0139601_28	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0139601_28	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0139601_30	PHROG	phrog_1105	DNA polymerase III theta subunit	DNA, RNA and nucleotide metabolism
UHGV-0139601_30	eggNOG-mapper	1080067.BAZH01000011_gene676	NA	NA
UHGV-0139601_30	Structural annotation	PF11686, NF008207	NA	NA
UHGV-0139601_31	PHROG	phrog_4183	NA	unknown function
UHGV-0139601_31	eggNOG-mapper	1080067.BAZH01000011_gene675	NA	NA
UHGV-0139601_31	Structural annotation	PF01475, TIGR03433, COG1695	NA	NA
UHGV-0139601_32	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0139601_32	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0139601_32	UniRef90	UniRef90_A0A7Z7SA69	DNA helicase	NA
UHGV-0139601_32	eggNOG-mapper	1080067.BAZH01000011_gene674	DnaB-like helicase N terminal domain	NA
UHGV-0139601_32	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0139601_32	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0139601_32	COG	COG0305	Replicative DNA helicase	NA
UHGV-0139601_32	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0139601_33	PHROG	phrog_1347	NA	unknown function
UHGV-0139601_33	UniRef90	UniRef90_UPI0010333446	replication protein RepO	NA
UHGV-0139601_33	eggNOG-mapper	1080067.BAZH01000011_gene673	Helix-turn-helix domain	NA
UHGV-0139601_33	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0139601_34	PHROG	phrog_2465	NA	unknown function
UHGV-0139601_34	UniRef90	UniRef90_UPI00101F3756	adenylate cyclase	NA
UHGV-0139601_34	eggNOG-mapper	598467.BrE312_2720	NA	NA
UHGV-0139601_35	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0139601_35	UniRef90	UniRef90_UPI00103483C3	toxin YdaT family protein	NA
UHGV-0139601_35	eggNOG-mapper	1080067.BAZH01000011_gene671	Putative bacterial toxin ydaT	NA
UHGV-0139601_35	Pfam	PF06254	Bacterial toxin ydaT	YdaT_toxin
UHGV-0139601_35	Structural annotation	PF06254	NA	NA
UHGV-0139601_36	KOfam	K22302	dicC; transcriptional repressor of cell division inhibition gene dicB	NA
UHGV-0139601_36	PHROG	phrog_409	transcriptional regulator	transcription regulation
UHGV-0139601_36	UniRef90	UniRef90_A0A8F5NYV4	Cro/Cl family transcriptional regulator	NA
UHGV-0139601_36	eggNOG-mapper	598467.BrE312_2722	DNA-binding transcriptional regulator Cro	NA
UHGV-0139601_36	Pfam	PF14549	DNA-binding transcriptional regulator Cro	P22_Cro
UHGV-0139601_36	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0139601_36	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-0139601_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0139601_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0139601_37	UniRef90	UniRef90_A0A8F5NXA5	Helix-turn-helix domain-containing protein	NA
UHGV-0139601_37	eggNOG-mapper	598467.BrE312_2723	helix-turn-helix domain protein	NA
UHGV-0139601_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139601_37	NCBIFam	NF007257.0	transcriptional repressor DicA	NA
UHGV-0139601_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0139601_37	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0139601_38	PHROG	phrog_2479	NA	unknown function
UHGV-0139601_38	eggNOG-mapper	1080067.BAZH01000011_gene669	NA	NA
UHGV-0139601_39	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0139601_39	PHROG	phrog_2489	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139601_39	UniRef90	UniRef90_A0A486VJE1	Exodeoxyribonuclease VIII	NA
UHGV-0139601_39	eggNOG-mapper	1080067.BAZH01000011_gene667	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-0139601_39	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0139601_39	Structural annotation	PF06630, NF007259, COG4712	NA	NA
UHGV-0139601_40	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0139601_40	UniRef90	UniRef90_A0A378CJG6	Gp157 family protein	NA
UHGV-0139601_40	eggNOG-mapper	35703.DQ02_08995	Siphovirus Gp157	NA
UHGV-0139601_40	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0139601_40	Structural annotation	PF05565	NA	NA
UHGV-0139601_41	PHROG	phrog_2482	NA	unknown function
UHGV-0139601_41	eggNOG-mapper	35703.DQ02_09000	NA	NA
UHGV-0139601_42	PHROG	phrog_1266	excisionase	integration and excision
UHGV-0139601_42	UniRef90	UniRef90_A0A486VK27	NA	NA
UHGV-0139601_42	eggNOG-mapper	1443113.LC20_02243	NA	NA
UHGV-0139601_42	Pfam	PF13986	NA	DUF4224
UHGV-0139601_42	Structural annotation	PF13986	NA	NA
UHGV-0139601_43	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0139601_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0139601_43	UniRef90	UniRef90_UPI001CC127D2	tyrosine-type recombinase/integrase	NA
UHGV-0139601_43	eggNOG-mapper	1127516.H9C152_9CAUD	DNA integration	NA
UHGV-0139601_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139601_43	Structural annotation	PF00589, PF12834, PF12167, MF_01807, NF001399, NF041908, COG4974	NA	NA