UHGV-0139697

Genome information

Genome length 39,578 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139697
vOTU ID	vOTU-014822
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_359568
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.23
Jumbo phage	No

Genome content
Genome length	39,578 bps
GC content	39.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.45%
Average CDS length	734.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139697_1	KOfam	K14059	int; integrase	NA
UHGV-0139697_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0139697_1	UniRef90	UniRef90_D6KLC6	Putative site-specific recombinase, phage integrase family	NA
UHGV-0139697_1	eggNOG-mapper	546273.VEIDISOL_00689	Belongs to the 'phage' integrase family	NA
UHGV-0139697_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0139697_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139697_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0139697_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0139697_2	PHROG	phrog_20936	NA	unknown function
UHGV-0139697_2	UniRef90	UniRef90_W1V9S8	Peptidase_M78 domain-containing protein	NA
UHGV-0139697_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0139697_2	Structural annotation	PF06114	NA	NA
UHGV-0139697_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0139697_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0139697_3	UniRef90	UniRef90_X8H8X8	DNA-binding helix-turn-helix protein	NA
UHGV-0139697_3	eggNOG-mapper	479436.Vpar_0382	Helix-turn-helix domain protein	NA
UHGV-0139697_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139697_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0139697_3	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0139697_4	UniRef90	UniRef90_X8H7K4	Cro/C1-type HTH DNA-binding domain protein	NA
UHGV-0139697_4	eggNOG-mapper	1121423.JONT01000002_gene2373	NA	NA
UHGV-0139697_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0139697_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0139697_7	UniRef90	UniRef90_X8H976	DNA-binding helix-turn-helix protein	NA
UHGV-0139697_7	eggNOG-mapper	546273.VEIDISOL_00695	Helix-turn-helix domain	NA
UHGV-0139697_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0139697_7	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0139697_8	UniRef90	UniRef90_D6KLD9	Surface antigen (D15)	NA
UHGV-0139697_9	PHROG	phrog_35266	NA	unknown function
UHGV-0139697_9	UniRef90	UniRef90_D6KLE0	Putative choline binding protein A	NA
UHGV-0139697_10	PHROG	phrog_29844	NA	unknown function
UHGV-0139697_11	PHROG	phrog_16315	NA	unknown function
UHGV-0139697_11	UniRef90	UniRef90_UPI000B139567	PcfJ domain-containing protein	NA
UHGV-0139697_11	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-0139697_11	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0139697_11	Structural annotation	PF14284	NA	NA
UHGV-0139697_12	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0139697_12	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139697_12	UniRef90	UniRef90_A0A096AL19	AAA_23 domain-containing protein	NA
UHGV-0139697_12	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-0139697_12	Pfam	PF13476	AAA domain	AAA_23
UHGV-0139697_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0139697_12	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0139697_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0139697_13	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0139697_13	UniRef90	UniRef90_A0A096BYG9	Phage antirepressor protein	NA
UHGV-0139697_13	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-0139697_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0139697_13	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0139697_13	COG	COG3617	Prophage antirepressor	NA
UHGV-0139697_13	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0139697_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0139697_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0139697_14	UniRef90	UniRef90_A0A096AMA3	Recombinase RecT	NA
UHGV-0139697_14	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-0139697_14	Pfam	PF03837	RecT family	RecT
UHGV-0139697_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0139697_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0139697_14	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0139697_15	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0139697_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0139697_15	UniRef90	UniRef90_W1V8U0	Lactamase_B domain-containing protein	NA
UHGV-0139697_15	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0139697_15	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0139697_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0139697_15	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0139697_16	PHROG	phrog_29533	NA	unknown function
UHGV-0139697_17	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0139697_17	UniRef90	UniRef90_X8H991	PF14297 domain protein	NA
UHGV-0139697_17	eggNOG-mapper	1401067.HMPREF0872_03460	NA	NA
UHGV-0139697_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0139697_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0139697_17	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0139697_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0139697_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0139697_18	UniRef90	UniRef90_X8H949	IstB-like ATP-binding protein	NA
UHGV-0139697_18	eggNOG-mapper	1401067.HMPREF0872_00395	DNA-dependent DNA replication	NA
UHGV-0139697_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0139697_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0139697_18	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0139697_19	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0139697_19	UniRef90	UniRef90_D6KLF0	Prophage Lp2 protein 24	NA
UHGV-0139697_19	eggNOG-mapper	60520.HR47_13580	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0139697_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0139697_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0139697_20	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0139697_20	UniRef90	UniRef90_X8H9L4	PF14359 domain protein	NA
UHGV-0139697_20	eggNOG-mapper	883156.HMPREF9282_01229	NA	NA
UHGV-0139697_20	Pfam	PF14359	NA	DUF4406
UHGV-0139697_20	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0139697_21	PHROG	phrog_1558	NA	unknown function
UHGV-0139697_21	UniRef90	UniRef90_UPI0006B5171F	helix-turn-helix domain-containing protein	NA
UHGV-0139697_21	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA
UHGV-0139697_21	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0139697_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0139697_23	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0139697_23	UniRef90	UniRef90_A0A1I4P2Y0	DNA methylase	NA
UHGV-0139697_23	eggNOG-mapper	1123288.SOV_2c03720	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0139697_23	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0139697_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0139697_23	COG	COG0863	DNA modification methylase	NA
UHGV-0139697_23	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0139697_24	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0139697_24	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0139697_24	UniRef90	UniRef90_W1V9U1	Methyltransferase	NA
UHGV-0139697_24	eggNOG-mapper	1123288.SOV_2c03720	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0139697_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0139697_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0139697_24	COG	COG0863	DNA modification methylase	NA
UHGV-0139697_24	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0139697_25	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0139697_25	UniRef90	UniRef90_W1V8Y8	Sigma-70 region 4 type 2	NA
UHGV-0139697_25	eggNOG-mapper	1123511.KB905868_gene188	DNA packaging	NA
UHGV-0139697_25	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0139697_25	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0139697_25	COG	COG5484	NA	NA
UHGV-0139697_25	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0139697_26	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0139697_26	UniRef90	UniRef90_D6KP84	Putative terminase, large subunit	NA
UHGV-0139697_26	eggNOG-mapper	706434.HMPREF9429_00530	TIGRFAM Phage	NA
UHGV-0139697_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0139697_26	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0139697_26	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0139697_26	COG	COG5410	NA	NA
UHGV-0139697_26	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0139697_27	PHROG	phrog_145	portal protein	head and packaging
UHGV-0139697_27	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-0139697_27	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-0139697_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0139697_28	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0139697_28	UniRef90	UniRef90_W1VC85	Ntox50 domain-containing protein	NA
UHGV-0139697_28	eggNOG-mapper	706434.HMPREF9429_00528	NA	NA
UHGV-0139697_28	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0139697_28	Structural annotation	PF15542	NA	NA
UHGV-0139697_29	PHROG	phrog_1865	NA	unknown function
UHGV-0139697_29	Structural annotation	PF07073, MF_00436, TIGR02383, COG1923	NA	NA
UHGV-0139697_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0139697_30	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-0139697_30	eggNOG-mapper	1123489.AUAN01000010_gene360	NA	NA
UHGV-0139697_30	Structural annotation	PF06810	NA	NA
UHGV-0139697_31	PHROG	phrog_212	major head protein	head and packaging
UHGV-0139697_31	UniRef90	UniRef90_UPI001C2F3899	phage capsid protein	NA
UHGV-0139697_31	eggNOG-mapper	1122918.KB907248_gene4499	NA	NA
UHGV-0139697_31	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0139697_32	PHROG	phrog_15682	NA	unknown function
UHGV-0139697_32	eggNOG-mapper	665959.HMPREF1013_00199	NA	NA
UHGV-0139697_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0139697_33	UniRef90	UniRef90_UPI000F8E0EA5	HK97 gp10 family phage protein	NA
UHGV-0139697_33	eggNOG-mapper	706434.HMPREF9429_00523	Phage virion morphogenesis	NA
UHGV-0139697_33	COG	COG5005	NA	NA
UHGV-0139697_33	Structural annotation	TIGR01725	NA	NA
UHGV-0139697_34	PHROG	phrog_19017	NA	unknown function
UHGV-0139697_34	eggNOG-mapper	706434.HMPREF9429_00522	NA	NA
UHGV-0139697_35	PHROG	phrog_18864	NA	unknown function
UHGV-0139697_35	eggNOG-mapper	706434.HMPREF9429_00521	NA	NA
UHGV-0139697_35	Structural annotation	PF06141, COG5003	NA	NA
UHGV-0139697_36	PHROG	phrog_1407	major tail protein	tail
UHGV-0139697_36	UniRef90	UniRef90_X8H8Q2	Phage major tail protein, TP901-1 family	NA
UHGV-0139697_36	eggNOG-mapper	706434.HMPREF9429_00520	Phage tail tube protein	NA
UHGV-0139697_36	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0139697_36	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0139697_36	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0139697_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0139697_37	eggNOG-mapper	1232428.CAVO010000021_gene798	NA	NA
UHGV-0139697_37	Structural annotation	PF19591	NA	NA
UHGV-0139697_38	PHROG	phrog_7377	NA	unknown function
UHGV-0139697_39	PHROG	phrog_12798	NA	unknown function
UHGV-0139697_39	UniRef90	UniRef90_W1V9U8	Tape measure protein	NA
UHGV-0139697_39	eggNOG-mapper	706434.HMPREF9429_00517	tape measure	NA
UHGV-0139697_39	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0139697_39	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0139697_39	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0139697_39	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-0139697_40	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0139697_40	UniRef90	UniRef90_X8H6S9	PF09343 family protein	NA
UHGV-0139697_40	eggNOG-mapper	706434.HMPREF9429_00516	NA	NA
UHGV-0139697_40	Pfam	PF09343	NA	DUF2460
UHGV-0139697_40	COG	COG5448	NA	NA
UHGV-0139697_40	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0139697_41	PHROG	phrog_778	tail assembly protein	tail
UHGV-0139697_41	UniRef90	UniRef90_X8H8N4	TIGR02218 family protein	NA
UHGV-0139697_41	eggNOG-mapper	706434.HMPREF9429_00515	NA	NA
UHGV-0139697_41	Pfam	PF09931	NA	DUF2163
UHGV-0139697_41	Pfam	PF09356	Phage conserved hypothetical protein BR0599	Phage_BR0599
UHGV-0139697_41	NCBIFam	TIGR02218.1	phage conserved hypothetical protein BR0599	NA
UHGV-0139697_41	COG	COG5449	NA	NA
UHGV-0139697_41	Structural annotation	PF09931, PF09356, TIGR02218, COG5449	NA	NA
UHGV-0139697_42	KOfam	K13694	mepS, spr; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]	NA
UHGV-0139697_42	PHROG	phrog_329	minor tail protein	tail
UHGV-0139697_42	UniRef90	UniRef90_W1VEK1	NlpC/P60 domain-containing protein	NA
UHGV-0139697_42	eggNOG-mapper	706434.HMPREF9429_00514	cysteine-type peptidase activity	NA
UHGV-0139697_42	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0139697_42	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0139697_42	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0139697_43	PHROG	phrog_1101	tail protein	tail
UHGV-0139697_43	UniRef90	UniRef90_W1VC98	Phage-tail_3 domain-containing protein	NA
UHGV-0139697_43	eggNOG-mapper	706434.HMPREF9429_00513	domain protein	NA
UHGV-0139697_43	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0139697_43	COG	COG1511	NA	NA
UHGV-0139697_43	Structural annotation	PF13550, PF05895, NF040662, TIGR03503, COG4733	NA	NA
UHGV-0139697_44	PHROG	phrog_2427	NA	unknown function
UHGV-0139697_44	Structural annotation	PF21519	NA	NA
UHGV-0139697_46	eggNOG-mapper	546273.VEIDISOL_01075	NA	NA
UHGV-0139697_46	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0139697_47	PHROG	phrog_22483	NA	unknown function
UHGV-0139697_47	UniRef90	UniRef90_X8H8Q8	Collagen triple helix repeat protein	NA
UHGV-0139697_47	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-0139697_47	Structural annotation	PF17936	NA	NA
UHGV-0139697_48	UniRef90	UniRef90_X8H951	Holin family protein	NA
UHGV-0139697_48	eggNOG-mapper	883156.HMPREF9282_01264	Bacteriophage holin family	NA
UHGV-0139697_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0139697_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0139697_49	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0139697_49	PHROG	phrog_894	endolysin	lysis
UHGV-0139697_49	UniRef90	UniRef90_X8H7B8	PF05951 family protein	NA
UHGV-0139697_49	eggNOG-mapper	868595.Desca_1639	Peptidase M15A	NA
UHGV-0139697_49	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0139697_49	COG	COG3108	NA	NA
UHGV-0139697_49	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0139697_50	PHROG	phrog_18860	NA	unknown function