UHGV-0139712

Genome information

Genome length 29,472 bps

CDS count 39

Completeness 61.31% (medium-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139712
vOTU ID	vOTU-035908
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_345483
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.28
Jumbo phage	No

Genome content
Genome length	29,472 bps
GC content	38.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.77%
Average CDS length	689.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139712_1	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0139712_1	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0139712_1	UniRef90	UniRef90_A0A3C1W1P9	Replicative DNA helicase	NA
UHGV-0139712_1	eggNOG-mapper	762983.HMPREF9444_01711	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0139712_1	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0139712_1	COG	COG0305	Replicative DNA helicase	NA
UHGV-0139712_1	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0139712_2	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0139712_2	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0139712_2	UniRef90	UniRef90_K2K8X4	Crossover junction endodeoxyribonuclease rusA	NA
UHGV-0139712_2	eggNOG-mapper	740709.A10D4_12864	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0139712_2	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0139712_2	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0139712_3	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-0139712_5	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0139712_5	PHROG	phrog_7	endolysin	lysis
UHGV-0139712_5	UniRef90	UniRef90_A0A2X0V6L9	Lysozyme	NA
UHGV-0139712_5	eggNOG-mapper	340177.Cag_0702	cytolysis by virus of host cell	NA
UHGV-0139712_5	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0139712_5	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0139712_5	HAMAP	MF_04110	Endolysin	NA
UHGV-0139712_5	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0139712_6	UniRef90	UniRef90_A0A3C0CBA0	Ribonucleoside-triphosphate reductase	NA
UHGV-0139712_6	eggNOG-mapper	1410676.JNKL01000005_gene333	CTP reductase activity	NA
UHGV-0139712_6	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0139712_6	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0139712_8	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0139712_8	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139712_8	UniRef90	UniRef90_R6MLC3	Phage endonuclease	NA
UHGV-0139712_8	eggNOG-mapper	1357275.AVEL02000151_gene1515	HNH nucleases	NA
UHGV-0139712_8	AcrCatalog	cluster_19695	NA	NA
UHGV-0139712_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0139712_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0139712_8	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0139712_9	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0139712_9	UniRef90	UniRef90_R5EL15	Putative phage terminase small subunit protein	NA
UHGV-0139712_9	eggNOG-mapper	380358.XALC_2399	Phage terminase, small subunit	NA
UHGV-0139712_9	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0139712_9	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0139712_9	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0139712_9	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0139712_10	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0139712_10	UniRef90	UniRef90_A0A4Q2JAZ3	Terminase large subunit	NA
UHGV-0139712_10	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0139712_10	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0139712_10	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0139712_10	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0139712_10	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0139712_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0139712_11	UniRef90	UniRef90_A0A3D4G7C4	Phage portal protein	NA
UHGV-0139712_11	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0139712_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0139712_11	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0139712_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0139712_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0139712_12	KOfam	K06904	NA	NA
UHGV-0139712_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0139712_12	UniRef90	UniRef90_A0A8J3F0K9	Peptidase U35	NA
UHGV-0139712_12	eggNOG-mapper	1027273.GZ77_20510	Caudovirus prohead serine protease	NA
UHGV-0139712_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0139712_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0139712_12	COG	COG3740	Phage head maturation protease	NA
UHGV-0139712_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0139712_13	UniRef90	UniRef90_A0A6L6YGI2	Phage major capsid protein	NA
UHGV-0139712_13	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0139712_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0139712_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0139712_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0139712_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0139712_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0139712_14	UniRef90	UniRef90_A0A4Q3NIQ7	Phage gp6-like head-tail connector protein	NA
UHGV-0139712_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0139712_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0139712_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0139712_15	PHROG	phrog_25	head closure Hc1	connector
UHGV-0139712_15	UniRef90	UniRef90_UPI00198149A4	phage head closure protein	NA
UHGV-0139712_15	eggNOG-mapper	1221522.B723_10620	Phage head-tail joining protein	NA
UHGV-0139712_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0139712_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0139712_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0139712_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0139712_17	PHROG	phrog_209	portal protein	head and packaging
UHGV-0139712_17	eggNOG-mapper	29486.NJ56_17665	NA	NA
UHGV-0139712_17	Structural annotation	PF09646	NA	NA
UHGV-0139712_18	PHROG	phrog_165	tail sheath	tail
UHGV-0139712_18	UniRef90	UniRef90_R5ELR7	Mu tail sheath family protein	NA
UHGV-0139712_18	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0139712_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0139712_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0139712_18	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0139712_18	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0139712_19	PHROG	phrog_185	tail tube protein	tail
UHGV-0139712_19	UniRef90	UniRef90_A0A1B9LF96	Phage tail protein	NA
UHGV-0139712_19	eggNOG-mapper	343509.SG0718	phage tail	NA
UHGV-0139712_19	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0139712_19	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0139712_20	eggNOG-mapper	160488.PP_3866	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0139712_20	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0139712_20	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0139712_21	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0139712_21	UniRef90	UniRef90_A0A5C7NK11	Phage tail tape measure protein	NA
UHGV-0139712_21	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-0139712_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0139712_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0139712_21	COG	COG5283	Phage-related tail protein	NA
UHGV-0139712_21	Structural annotation	TIGR01760	NA	NA
UHGV-0139712_22	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0139712_22	UniRef90	UniRef90_R5EKZ8	DNA_circ_N domain-containing protein	NA
UHGV-0139712_22	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0139712_22	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0139712_22	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0139712_22	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0139712_24	PHROG	phrog_177	tail protein	tail
UHGV-0139712_24	UniRef90	UniRef90_A0A2W4U8P8	Baseplate protein	NA
UHGV-0139712_24	eggNOG-mapper	742821.HMPREF9464_01822	Tail protein	NA
UHGV-0139712_24	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0139712_24	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0139712_24	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0139712_25	UniRef90	UniRef90_R5EZ78	Prophage MuSo2	NA
UHGV-0139712_25	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0139712_25	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0139712_25	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0139712_25	COG	COG4384	NA	NA
UHGV-0139712_26	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0139712_26	UniRef90	UniRef90_UPI00137A81EF	PAAR domain-containing protein	NA
UHGV-0139712_26	eggNOG-mapper	457415.HMPREF1006_02490	PAAR motif	NA
UHGV-0139712_26	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0139712_26	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-0139712_26	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0139712_27	UniRef90	UniRef90_UPI00075B9CA3	NA	NA
UHGV-0139712_27	eggNOG-mapper	640511.BC1002_7156	NA	NA
UHGV-0139712_27	Pfam	PF10711	NA	DUF2513
UHGV-0139712_27	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0139712_29	PHROG	phrog_180	tail protein	tail
UHGV-0139712_29	UniRef90	UniRef90_R5EKZ3	Mu-like prophage protein gp46	NA
UHGV-0139712_29	eggNOG-mapper	570967.JMLV01000018_gene455	Phage protein GP46	NA
UHGV-0139712_29	Pfam	PF07409	NA	GP46
UHGV-0139712_29	COG	COG4381	NA	NA
UHGV-0139712_29	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0139712_30	PHROG	phrog_6	baseplate protein	tail
UHGV-0139712_30	UniRef90	UniRef90_R5ELP9	Baseplate_J domain-containing protein	NA
UHGV-0139712_30	eggNOG-mapper	296591.Bpro_3733	Baseplate J-like protein	NA
UHGV-0139712_30	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0139712_30	COG	COG3299	NA	NA
UHGV-0139712_30	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0139712_31	PHROG	phrog_203	tail protein	tail
UHGV-0139712_31	UniRef90	UniRef90_UPI000382AB14	NA	NA
UHGV-0139712_31	eggNOG-mapper	343509.SG0712	NA	NA
UHGV-0139712_31	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0139712_31	COG	COG3778	NA	NA
UHGV-0139712_31	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0139712_32	PHROG	phrog_20912	NA	unknown function
UHGV-0139712_32	UniRef90	UniRef90_A0A2P5THP7	E1_FCCH domain-containing protein (Fragment)	NA
UHGV-0139712_32	eggNOG-mapper	633.DJ40_1283	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0139712_32	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0139712_32	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0139712_33	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0139712_33	UniRef90	UniRef90_UPI0006D48C76	four helix bundle protein	NA
UHGV-0139712_33	eggNOG-mapper	259536.Psyc_0448	23S rRNA-intervening sequence protein	NA
UHGV-0139712_33	Structural annotation	PF05635, NF033474, COG3781	NA	NA
UHGV-0139712_34	KOfam	K21038	brt; reverse transcriptase [EC:2.7.7.49]	NA
UHGV-0139712_34	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0139712_34	UniRef90	UniRef90_A0A4Q0Y2D5	Reverse transcriptase domain-containing protein	NA
UHGV-0139712_34	eggNOG-mapper	118005.AWNK01000004_gene1120	reverse transcriptase	NA
UHGV-0139712_34	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0139712_34	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0139712_34	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0139712_34	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0139712_35	eggNOG-mapper	556268.OFAG_01051	NA	NA
UHGV-0139712_36	PHROG	phrog_3342	NA	unknown function
UHGV-0139712_36	eggNOG-mapper	556268.OFAG_02315	NA	NA
UHGV-0139712_37	KOfam	K14059	int; integrase	NA
UHGV-0139712_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0139712_37	UniRef90	UniRef90_A0A662Z8H7	Integrase	NA
UHGV-0139712_37	eggNOG-mapper	1307437.J139_13675	NA	NA
UHGV-0139712_37	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0139712_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139712_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0139712_37	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0139712_38	Structural annotation	PF09386, NF041264, COG4453	NA	NA
UHGV-0139712_39	PHROG	phrog_3243	NA	unknown function
UHGV-0139712_39	eggNOG-mapper	596329.HMPREF0631_1364	NA	NA
UHGV-0139712_39	Structural annotation	PF17185, MF_00075, NF007814, COG0361	NA	NA