UHGV-0139750

Genome information

Genome length 37,538 bps

CDS count 49

Completeness 66.53% (medium-quality)

geNomad score 0.9180

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139750
vOTU ID	vOTU-016251
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370910
BioSample	SAMN03295826
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9180
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.53
Jumbo phage	No

Genome content
Genome length	37,538 bps
GC content	25.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	79.45%
Average CDS length	609.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139750_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0139750_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0139750_1	UniRef90	UniRef90_A0A133MKM4	Site-specific recombinase, phage integrase family	NA
UHGV-0139750_1	eggNOG-mapper	1443125.Z962_07700	Belongs to the 'phage' integrase family	NA
UHGV-0139750_1	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0139750_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139750_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0139750_1	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0139750_2	eggNOG-mapper	585394.RHOM_15110	NA	NA
UHGV-0139750_3	eggNOG-mapper	870187.Thini_1984	NA	NA
UHGV-0139750_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0139750_4	UniRef90	UniRef90_A0A2X2Y1V4	Putative transcriptional regulator	NA
UHGV-0139750_4	eggNOG-mapper	632245.CLP_2589	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0139750_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0139750_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0139750_7	PHROG	phrog_25531	NA	unknown function
UHGV-0139750_7	UniRef90	UniRef90_A0A841KSS8	Helicase ATP-binding domain-containing protein	NA
UHGV-0139750_7	eggNOG-mapper	1121285.AUFK01000014_gene2595	Phage plasmid primase P4 family	NA
UHGV-0139750_7	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0139750_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0139750_8	UniRef90	UniRef90_UPI000693CF39	phage antirepressor KilAC domain-containing protein	NA
UHGV-0139750_8	eggNOG-mapper	1235802.C823_04551	Phage antirepressor protein KilAC domain	NA
UHGV-0139750_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0139750_8	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0139750_8	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0139750_10	COG	COG3617	Prophage antirepressor	NA
UHGV-0139750_14	eggNOG-mapper	1280689.AUJC01000007_gene3326	NA	NA
UHGV-0139750_15	KOfam	K16862	PLD6; mitochondrial cardiolipin hydrolase [EC:3.1.4.-]	NA
UHGV-0139750_15	PHROG	phrog_12711	NA	unknown function
UHGV-0139750_15	UniRef90	UniRef90_A0A133MGJ3	PLD phosphodiesterase domain-containing protein (Fragment)	NA
UHGV-0139750_15	eggNOG-mapper	1123035.ARLA01000025_gene1326	PLD-like domain	NA
UHGV-0139750_15	Pfam	PF13091	PLD-like domain	PLDc_2
UHGV-0139750_15	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-0139750_16	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0139750_16	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0139750_16	eggNOG-mapper	1123318.KB904586_gene454	NA	NA
UHGV-0139750_16	Structural annotation	PF16092, MF_02210, NF000135, COG3818	NA	NA
UHGV-0139750_17	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0139750_17	UniRef90	UniRef90_A0A133MGY5	HTH_Tnp_IS630 domain-containing protein	NA
UHGV-0139750_17	eggNOG-mapper	1415774.U728_739	NA	NA
UHGV-0139750_17	Pfam	PF01710	Transposase	HTH_Tnp_IS630
UHGV-0139750_17	Structural annotation	PF13022, COG3677	NA	NA
UHGV-0139750_18	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0139750_18	UniRef90	UniRef90_A0A317TP57	Terminase (Fragment)	NA
UHGV-0139750_18	eggNOG-mapper	1499683.CCFF01000017_gene2143	TIGRFAM Phage	NA
UHGV-0139750_18	COG	COG5362	Phage terminase large subunit	NA
UHGV-0139750_18	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0139750_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0139750_19	UniRef90	UniRef90_A0A133ML74	Putative phage portal protein, SPP1 Gp6 (Fragment)	NA
UHGV-0139750_19	eggNOG-mapper	1499683.CCFF01000005_gene65	portal protein, SPP1 Gp6-like	NA
UHGV-0139750_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0139750_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0139750_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0139750_20	UniRef90	UniRef90_A0A133MZJ4	Phage protein F-like protein	NA
UHGV-0139750_20	eggNOG-mapper	1391647.AVSV01000022_gene2557	Phage Mu protein F like protein	NA
UHGV-0139750_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0139750_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0139750_20	COG	COG2369	NA	NA
UHGV-0139750_20	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0139750_22	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0139750_22	UniRef90	UniRef90_A0A6M1VSJ7	NA	NA
UHGV-0139750_22	eggNOG-mapper	1151292.QEW_0415	NA	NA
UHGV-0139750_22	Pfam	PF14265	NA	DUF4355
UHGV-0139750_22	Structural annotation	PF14265	NA	NA
UHGV-0139750_23	PHROG	phrog_267	major head protein	head and packaging
UHGV-0139750_23	UniRef90	UniRef90_A0A7V8IA85	Phage coat protein gp6	NA
UHGV-0139750_23	eggNOG-mapper	1321778.HMPREF1982_03550	P22 coat protein-protein 5 domain protein	NA
UHGV-0139750_23	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0139750_25	eggNOG-mapper	1391647.AVSV01000022_gene2564	NA	NA
UHGV-0139750_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0139750_26	UniRef90	UniRef90_A0A6M1W9J4	HK97 gp10 family phage protein	NA
UHGV-0139750_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0139750_26	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0139750_27	Structural annotation	PF20765	NA	NA
UHGV-0139750_28	PHROG	phrog_885	major tail protein	tail
UHGV-0139750_28	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0139750_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0139750_31	UniRef90	UniRef90_A0A133MP93	Phage tail tape measure protein, TP901 family	NA
UHGV-0139750_31	eggNOG-mapper	1280689.AUJC01000011_gene1530	tape measure	NA
UHGV-0139750_31	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0139750_32	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0139750_32	UniRef90	UniRef90_A0A133MP71	Phage tail component protein	NA
UHGV-0139750_32	eggNOG-mapper	1443125.Z962_05590	phage tail	NA
UHGV-0139750_32	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0139750_32	COG	COG4722	Phage-related protein YomH	NA
UHGV-0139750_32	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0139750_33	UniRef90	UniRef90_UPI001C8620F2	Ig-like domain-containing protein	NA
UHGV-0139750_33	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0139750_33	COG	COG5492	NA	NA
UHGV-0139750_34	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0139750_34	UniRef90	UniRef90_UPI001ABA6C53	phage tail protein	NA
UHGV-0139750_34	eggNOG-mapper	1443125.Z962_05575	Prophage endopeptidase tail	NA
UHGV-0139750_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0139750_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0139750_34	COG	COG4926	Phage-related protein	NA
UHGV-0139750_35	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-0139750_35	UniRef90	UniRef90_A0A133MPE9	Bacteriocin	NA
UHGV-0139750_35	eggNOG-mapper	1294142.CINTURNW_0311	BhlA holin family	NA
UHGV-0139750_35	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0139750_36	PHROG	phrog_13256	NA	unknown function
UHGV-0139750_36	UniRef90	UniRef90_A0A0S6U776	Phage exported protein	NA
UHGV-0139750_36	eggNOG-mapper	871968.DESME_08815	NA	NA
UHGV-0139750_37	eggNOG-mapper	545243.BAEV01000183_gene2418	NA	NA
UHGV-0139750_38	PHROG	phrog_435	endolysin	lysis
UHGV-0139750_38	UniRef90	UniRef90_UPI000AFB44F5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0139750_38	eggNOG-mapper	931276.Cspa_c10340	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0139750_38	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0139750_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0139750_39	eggNOG-mapper	931276.Cspa_c56990	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0139750_39	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0139750_40	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0139750_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0139750_40	UniRef90	UniRef90_A0A1E5FZI4	Core-binding (CB) domain-containing protein	NA
UHGV-0139750_41	UniRef90	UniRef90_A0A381IRP3	Integrase/recombinase	NA
UHGV-0139750_41	eggNOG-mapper	37659.JNLN01000001_gene2419	Belongs to the 'phage' integrase family	NA
UHGV-0139750_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0139750_42	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0139750_42	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0139750_42	UniRef90	UniRef90_A0A2X2Y705	DNA-binding protein	NA
UHGV-0139750_42	eggNOG-mapper	195103.CPF_1021	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0139750_42	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0139750_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139750_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0139750_42	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0139750_43	eggNOG-mapper	1211035.CD30_14705	NA	NA
UHGV-0139750_47	UniRef90	UniRef90_A0A0H2YQL2	Putative lipoprotein	NA