UHGV-0139761

Genome information

Genome length 34,193 bps

CDS count 57

Completeness 98.89% (high-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139761
vOTU ID	vOTU-076200
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370894
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.36
Jumbo phage	No

Genome content
Genome length	34,193 bps
GC content	39.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.88%
Average CDS length	542.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139761_1	KOfam	K14059	int; integrase	NA
UHGV-0139761_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0139761_1	UniRef90	UniRef90_UPI00061BECDE	site-specific integrase	NA
UHGV-0139761_1	eggNOG-mapper	585203.SMSK564_1321	Pfam:Integrase_AP2	NA
UHGV-0139761_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0139761_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0139761_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139761_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0139761_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0139761_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0139761_2	UniRef90	UniRef90_V8IAG6	DNA-binding protein	NA
UHGV-0139761_2	eggNOG-mapper	585203.SMSK564_1320	Abi-like protein	NA
UHGV-0139761_2	PADLOC	AbiD	AbiD	Abi
UHGV-0139761_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0139761_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0139761_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0139761_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0139761_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0139761_3	UniRef90	UniRef90_E1LN49	Helix-turn-helix family protein	NA
UHGV-0139761_3	eggNOG-mapper	585203.SMSK564_1319	Peptidase S24-like	NA
UHGV-0139761_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139761_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0139761_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0139761_3	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0139761_4	PHROG	phrog_20440	NA	unknown function
UHGV-0139761_4	UniRef90	UniRef90_F5VXX3	Conserved domain protein	NA
UHGV-0139761_4	eggNOG-mapper	997830.HMPREF1124_0568	NA	NA
UHGV-0139761_5	PHROG	phrog_4761	NA	unknown function
UHGV-0139761_5	eggNOG-mapper	585203.SMSK564_1317	NA	NA
UHGV-0139761_6	PHROG	phrog_4791	NA	unknown function
UHGV-0139761_6	UniRef90	UniRef90_Q7Y4L9	Gp5	NA
UHGV-0139761_7	PHROG	phrog_28321	NA	unknown function
UHGV-0139761_8	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0139761_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0139761_8	UniRef90	UniRef90_Q708Q8	Transcriptional regulator	NA
UHGV-0139761_8	eggNOG-mapper	585203.SMSK564_1314	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0139761_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139761_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0139761_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0139761_9	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0139761_9	UniRef90	UniRef90_E1LN43	Helix-turn-helix family protein	NA
UHGV-0139761_9	eggNOG-mapper	585203.SMSK564_1313	Helix-turn-helix XRE-family like proteins	NA
UHGV-0139761_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139761_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0139761_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0139761_10	PHROG	phrog_1456	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0139761_10	UniRef90	UniRef90_A0A4J1YIN4	Phage replication protein	NA
UHGV-0139761_10	eggNOG-mapper	997830.HMPREF1124_0572	NA	NA
UHGV-0139761_10	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0139761_10	Structural annotation	PF04703, MF_01909, NF040939, COG3355	NA	NA
UHGV-0139761_11	PHROG	phrog_4488	NA	unknown function
UHGV-0139761_11	UniRef90	UniRef90_Q7Y4L1	Gp13	NA
UHGV-0139761_12	PHROG	phrog_2317	NA	unknown function
UHGV-0139761_12	UniRef90	UniRef90_A0A1X1JGM9	Integrase catalytic domain-containing protein	NA
UHGV-0139761_12	eggNOG-mapper	585203.SMSK564_1309	NA	NA
UHGV-0139761_13	PHROG	phrog_5238	NA	unknown function
UHGV-0139761_13	UniRef90	UniRef90_D5AIZ5	Pathogenicity island protein	NA
UHGV-0139761_13	eggNOG-mapper	585203.SMSK564_1308	NA	NA
UHGV-0139761_14	PHROG	phrog_1490	lipoprotein	other
UHGV-0139761_14	UniRef90	UniRef90_A0A0Y3MUF1	Putative phage lipoprotein	NA
UHGV-0139761_14	eggNOG-mapper	585203.SMSK564_1307	NA	NA
UHGV-0139761_15	PHROG	phrog_1555	NA	unknown function
UHGV-0139761_15	UniRef90	UniRef90_A0A4J1X2V1	Phage replication initiation protein	NA
UHGV-0139761_15	eggNOG-mapper	585203.SMSK564_1306	NA	NA
UHGV-0139761_15	Structural annotation	PF07870	NA	NA
UHGV-0139761_16	PHROG	phrog_1580	NA	unknown function
UHGV-0139761_17	PHROG	phrog_1174	NA	unknown function
UHGV-0139761_17	UniRef90	UniRef90_A0A654XP97	NA	NA
UHGV-0139761_17	eggNOG-mapper	768726.HMPREF9178_1079	NA	NA
UHGV-0139761_18	PHROG	phrog_11897	NA	unknown function
UHGV-0139761_18	UniRef90	UniRef90_A0A0T9IMU1	NA	NA
UHGV-0139761_19	PHROG	phrog_5262	NA	unknown function
UHGV-0139761_19	UniRef90	UniRef90_A0A0B7LXU2	NA	NA
UHGV-0139761_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0139761_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0139761_20	UniRef90	UniRef90_A0A2P0A2F8	Single-stranded DNA-binding protein	NA
UHGV-0139761_20	eggNOG-mapper	585203.SMSK564_1302	Single-strand binding protein family	NA
UHGV-0139761_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0139761_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0139761_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0139761_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0139761_20	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0139761_21	PHROG	phrog_1681	NA	unknown function
UHGV-0139761_21	UniRef90	UniRef90_A0A098ANN2	NA	NA
UHGV-0139761_21	eggNOG-mapper	585203.SMSK564_1301	NA	NA
UHGV-0139761_22	PHROG	phrog_1638	NA	unknown function
UHGV-0139761_22	eggNOG-mapper	585203.SMSK564_1300	NA	NA
UHGV-0139761_23	PHROG	phrog_121	NA	unknown function
UHGV-0139761_23	UniRef90	UniRef90_UPI001C65C78D	NA	NA
UHGV-0139761_23	eggNOG-mapper	585203.SMSK564_1299	NA	NA
UHGV-0139761_23	Pfam	PF07852	NA	DUF1642
UHGV-0139761_23	Structural annotation	PF07852	NA	NA
UHGV-0139761_25	PHROG	phrog_884	NA	unknown function
UHGV-0139761_25	UniRef90	UniRef90_UPI00066C81D7	NA	NA
UHGV-0139761_25	eggNOG-mapper	585203.SMSK564_1298	NA	NA
UHGV-0139761_25	Pfam	PF07116	NA	DUF1372
UHGV-0139761_25	Structural annotation	PF07116, COG3585	NA	NA
UHGV-0139761_26	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-0139761_26	UniRef90	UniRef90_S7YQ94	DNA-binding protein	NA
UHGV-0139761_26	eggNOG-mapper	585203.SMSK564_1297	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0139761_26	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0139761_26	Structural annotation	PF08761, MF_01020, NF007113, COG4508	NA	NA
UHGV-0139761_27	PHROG	phrog_98	NA	unknown function
UHGV-0139761_27	UniRef90	UniRef90_UPI0002EC401F	YopX family protein	NA
UHGV-0139761_27	eggNOG-mapper	1054460.SPPN_00095	YopX protein	NA
UHGV-0139761_27	Pfam	PF09643	YopX protein	YopX
UHGV-0139761_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0139761_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0139761_28	PHROG	phrog_12243	NA	unknown function
UHGV-0139761_30	PHROG	phrog_3476	NA	unknown function
UHGV-0139761_31	PHROG	phrog_236	nucleotide kinase	other
UHGV-0139761_31	UniRef90	UniRef90_A0A0T7K7C5	NA	NA
UHGV-0139761_31	eggNOG-mapper	768726.HMPREF9178_1073	NA	NA
UHGV-0139761_31	Pfam	PF11753	NA	DUF3310
UHGV-0139761_31	Structural annotation	PF11753	NA	NA
UHGV-0139761_32	PHROG	phrog_17529	NA	unknown function
UHGV-0139761_32	UniRef90	UniRef90_E1LN25	PHB domain-containing protein	NA
UHGV-0139761_32	eggNOG-mapper	585203.SMSK564_1294	SPFH domain / Band 7 family	NA
UHGV-0139761_32	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0139761_32	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0139761_33	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0139761_33	UniRef90	UniRef90_E1LN24	Putative autolysin regulatory protein arpU	NA
UHGV-0139761_33	eggNOG-mapper	585203.SMSK564_1293	Transcriptional regulator, ArpU family	NA
UHGV-0139761_33	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0139761_33	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0139761_34	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0139761_34	PHROG	phrog_216	integrase	integration and excision
UHGV-0139761_34	UniRef90	UniRef90_E1LN23	Phage integrase family protein	NA
UHGV-0139761_34	eggNOG-mapper	585203.SMSK564_1292	Phage integrase family	NA
UHGV-0139761_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139761_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0139761_34	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0139761_35	PHROG	phrog_104	portal protein	head and packaging
UHGV-0139761_35	UniRef90	UniRef90_Q7Y4J0	Gp34	NA
UHGV-0139761_35	eggNOG-mapper	585203.SMSK564_1289	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0139761_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0139761_36	PHROG	phrog_7104	NA	unknown function
UHGV-0139761_36	UniRef90	UniRef90_A0A0E8ZU68	Gp35	NA
UHGV-0139761_36	eggNOG-mapper	585203.SMSK564_1288	NA	NA
UHGV-0139761_36	Structural annotation	PF03496	NA	NA
UHGV-0139761_37	PHROG	phrog_6473	NA	unknown function
UHGV-0139761_37	eggNOG-mapper	864570.HMPREF9189_1691	NA	NA
UHGV-0139761_38	PHROG	phrog_7268	NA	unknown function
UHGV-0139761_39	PHROG	phrog_17688	NA	unknown function
UHGV-0139761_39	UniRef90	UniRef90_Q7Y4I6	Gp38	NA
UHGV-0139761_39	eggNOG-mapper	585203.SMSK564_1286	phage terminase, large subunit	NA
UHGV-0139761_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0139761_39	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0139761_40	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0139761_40	UniRef90	UniRef90_A0A4V0ELT7	Gp39	NA
UHGV-0139761_40	eggNOG-mapper	585203.SMSK564_1285	NA	NA
UHGV-0139761_40	Structural annotation	PF14265	NA	NA
UHGV-0139761_41	PHROG	phrog_32396	NA	unknown function
UHGV-0139761_41	UniRef90	UniRef90_A0A0M4KD01	Phage capsid protein	NA
UHGV-0139761_41	eggNOG-mapper	585203.SMSK564_1284	Phage capsid family	NA
UHGV-0139761_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0139761_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0139761_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0139761_42	PHROG	phrog_1539	Arc-like repressor	transcription regulation
UHGV-0139761_42	UniRef90	UniRef90_A0A1X1L0V5	HeH domain-containing protein	NA
UHGV-0139761_42	Pfam	PF12949	HeH/LEM domain	HeH
UHGV-0139761_42	Structural annotation	PF12949	NA	NA
UHGV-0139761_43	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0139761_43	UniRef90	UniRef90_Q7Y4I2	Gp42	NA
UHGV-0139761_43	eggNOG-mapper	585203.SMSK564_1282	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0139761_43	Pfam	PF09355	NA	Phage_Gp19
UHGV-0139761_43	Structural annotation	PF09355	NA	NA
UHGV-0139761_44	PHROG	phrog_501	head closure Hc1	connector
UHGV-0139761_44	UniRef90	UniRef90_Q7Y4I1	Gp43	NA
UHGV-0139761_44	eggNOG-mapper	157924.Q7Y4I1_9CAUD	NA	NA
UHGV-0139761_44	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0139761_45	PHROG	phrog_387	neck protein	connector
UHGV-0139761_45	UniRef90	UniRef90_A0A0E9GXC0	NA	NA
UHGV-0139761_45	eggNOG-mapper	1231377.C426_1733	NA	NA
UHGV-0139761_46	PHROG	phrog_123	tail terminator	connector
UHGV-0139761_46	UniRef90	UniRef90_A0A0E8ZUI3	Gp45	NA
UHGV-0139761_46	eggNOG-mapper	585203.SMSK564_1280	NA	NA
UHGV-0139761_46	Structural annotation	PF06141	NA	NA
UHGV-0139761_47	PHROG	phrog_117	major tail protein	tail
UHGV-0139761_47	UniRef90	UniRef90_A0A1S5SD31	Major tail protein	NA
UHGV-0139761_47	eggNOG-mapper	585203.SMSK564_1279	domain, Protein	NA
UHGV-0139761_47	COG	COG5492	NA	NA
UHGV-0139761_47	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0139761_48	PHROG	phrog_1526	NA	unknown function
UHGV-0139761_48	UniRef90	UniRef90_A0A0E9GVS8	NA	NA
UHGV-0139761_48	eggNOG-mapper	1423775.BAMN01000011_gene597	NA	NA
UHGV-0139761_49	PHROG	phrog_1633	NA	unknown function
UHGV-0139761_49	UniRef90	UniRef90_UPI00156526D2	NA	NA
UHGV-0139761_49	eggNOG-mapper	585203.SMSK564_1277	NA	NA
UHGV-0139761_49	Pfam	PF17318	NA	DUF5361
UHGV-0139761_49	Structural annotation	PF17318	NA	NA
UHGV-0139761_50	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0139761_50	UniRef90	UniRef90_E1LN07	PblA, putative	NA
UHGV-0139761_50	eggNOG-mapper	585203.SMSK564_1276	phage tail tape measure protein	NA
UHGV-0139761_50	COG	COG1511	NA	NA
UHGV-0139761_50	Structural annotation	PF20155	NA	NA
UHGV-0139761_51	UniRef90	UniRef90_F9P1N1	Phage tail protein	NA
UHGV-0139761_51	eggNOG-mapper	768726.HMPREF9178_1053	NA	NA
UHGV-0139761_51	COG	COG4722	Phage-related protein YomH	NA
UHGV-0139761_51	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0139761_52	PHROG	phrog_2270	NA	unknown function
UHGV-0139761_52	UniRef90	UniRef90_UPI0007C53189	tail fiber domain-containing protein	NA
UHGV-0139761_52	eggNOG-mapper	1095737.HMPREF1110_1747	cellulase activity	NA
UHGV-0139761_52	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0139761_52	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0139761_52	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0139761_52	COG	COG0466	ATP-dependent Lon protease, bacterial type	NA
UHGV-0139761_52	Structural annotation	PF14594, PF21582, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0139761_53	PHROG	phrog_12683	NA	unknown function
UHGV-0139761_53	UniRef90	UniRef90_A0A081R6K4	ATP synthase F0 sector subunit C	NA
UHGV-0139761_53	eggNOG-mapper	1095737.HMPREF1110_1748	NA	NA
UHGV-0139761_54	PHROG	phrog_1554	NA	unknown function
UHGV-0139761_54	eggNOG-mapper	585203.SMSK564_1274	NA	NA
UHGV-0139761_54	Structural annotation	PF07104	NA	NA
UHGV-0139761_55	PHROG	phrog_4257	NA	unknown function
UHGV-0139761_55	UniRef90	UniRef90_A0A139QI86	NA	NA
UHGV-0139761_55	eggNOG-mapper	1095737.HMPREF1110_1750	NA	NA
UHGV-0139761_56	PHROG	phrog_608	holin	lysis
UHGV-0139761_56	UniRef90	UniRef90_E1LN03	Phage holin, LL-H family	NA
UHGV-0139761_56	eggNOG-mapper	585203.SMSK564_1272	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0139761_56	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0139761_56	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0139761_57	KOfam	K00689	E2.4.1.5; dextransucrase [EC:2.4.1.5]	NA
UHGV-0139761_57	PHROG	phrog_7854	endolysin	lysis
UHGV-0139761_57	UniRef90	UniRef90_E1LN02	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0139761_57	eggNOG-mapper	585203.SMSK564_1271	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0139761_57	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0139761_57	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0139761_57	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0139761_57	Structural annotation	PF01510, PF19127, MF_04111, TIGR04035, NF008758, COG5263, COG3023	NA	NA