UHGV-0139789

Genome information

Genome length 42,969 bps

CDS count 71

Completeness 95.16% (high-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139789
vOTU ID	vOTU-066050
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_364990
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.95
Jumbo phage	No

Genome content
Genome length	42,969 bps
GC content	41.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	88.90%
Average CDS length	541.01 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139789_2	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0139789_2	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-0139789_2	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0139789_2	Pfam	PF06048	NA	DUF927
UHGV-0139789_2	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0139789_2	COG	COG5519	NA	NA
UHGV-0139789_2	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0139789_3	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0139789_3	PHROG	phrog_11992	NA	unknown function
UHGV-0139789_3	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-0139789_3	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0139789_3	PADLOC	drt-UG29	DRT	DRT
UHGV-0139789_3	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0139789_3	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0139789_3	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0139789_4	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0139789_4	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0139789_4	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0139789_4	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0139789_4	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0139789_5	PHROG	phrog_28936	NA	unknown function
UHGV-0139789_5	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0139789_5	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0139789_6	PHROG	phrog_18107	NA	unknown function
UHGV-0139789_6	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0139789_6	Structural annotation	PF05037	NA	NA
UHGV-0139789_7	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0139789_7	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0139789_7	eggNOG-mapper	397290.C810_05165	AAA domain	NA
UHGV-0139789_7	Structural annotation	PF08423, TIGR01618	NA	NA
UHGV-0139789_8	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0139789_9	Structural annotation	NF001645	NA	NA
UHGV-0139789_15	PHROG	phrog_7964	NA	unknown function
UHGV-0139789_15	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0139789_15	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0139789_15	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0139789_15	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0139789_16	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0139789_16	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0139789_16	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0139789_20	Structural annotation	PF13601, MF_01819, NF038251, COG1846	NA	NA
UHGV-0139789_22	UniRef90	UniRef90_A0A395X814	XRE family transcriptional regulator	NA
UHGV-0139789_22	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0139789_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0139789_22	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0139789_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0139789_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0139789_23	UniRef90	UniRef90_A0A395X7H2	XRE family transcriptional regulator	NA
UHGV-0139789_23	eggNOG-mapper	397288.C806_00131	Transcriptional	NA
UHGV-0139789_23	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0139789_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139789_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0139789_23	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0139789_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0139789_26	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0139789_26	UniRef90	UniRef90_UPI00156F56E8	ORF6C domain-containing protein	NA
UHGV-0139789_26	eggNOG-mapper	658655.HMPREF0988_02543	Phage regulatory protein	NA
UHGV-0139789_26	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0139789_26	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0139789_26	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0139789_26	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0139789_27	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0139789_27	eggNOG-mapper	445971.ANASTE_01016	NA	NA
UHGV-0139789_27	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0139789_28	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0139789_28	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0139789_28	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0139789_28	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0139789_28	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0139789_29	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0139789_29	PHROG	phrog_95	integrase	integration and excision
UHGV-0139789_29	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-0139789_29	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0139789_29	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0139789_29	Pfam	PF07508	Recombinase	Recombinase
UHGV-0139789_29	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0139789_29	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0139789_29	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0139789_30	PHROG	phrog_38078	NA	unknown function
UHGV-0139789_30	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0139789_30	eggNOG-mapper	476272.RUMHYD_03304	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0139789_30	Pfam	PF05257	CHAP domain	CHAP
UHGV-0139789_30	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0139789_30	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0139789_30	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-0139789_31	PHROG	phrog_2310	NA	unknown function
UHGV-0139789_34	PHROG	phrog_6616	tail protein	tail
UHGV-0139789_34	UniRef90	UniRef90_A0A173R8I5	Peptidase S74 domain-containing protein	NA
UHGV-0139789_34	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0139789_34	Structural annotation	PF05113, PF02010, NF033848, NF007392, COG3500	NA	NA
UHGV-0139789_35	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0139789_36	KOfam	K08757	APOA1; apolipoprotein A-I	NA
UHGV-0139789_36	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0139789_36	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0139789_36	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0139789_36	COG	COG1511	NA	NA
UHGV-0139789_36	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0139789_37	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139789_37	UniRef90	UniRef90_UPI00155E23B1	NUMOD4 domain-containing protein	NA
UHGV-0139789_37	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0139789_37	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0139789_37	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0139789_37	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0139789_37	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0139789_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0139789_38	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0139789_38	COG	COG1511	NA	NA
UHGV-0139789_38	Structural annotation	PF20155	NA	NA
UHGV-0139789_39	PHROG	phrog_706	NA	unknown function
UHGV-0139789_39	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0139789_39	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0139789_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0139789_39	Structural annotation	PF06854	NA	NA
UHGV-0139789_40	PHROG	phrog_11299	NA	unknown function
UHGV-0139789_40	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0139789_40	Structural annotation	PF10666	NA	NA
UHGV-0139789_41	PHROG	phrog_3099	NA	unknown function
UHGV-0139789_41	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0139789_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0139789_42	PHROG	phrog_3266	tail completion	connector
UHGV-0139789_42	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0139789_42	Structural annotation	PF12691	NA	NA
UHGV-0139789_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0139789_43	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0139789_43	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0139789_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0139789_43	Structural annotation	PF11114	NA	NA
UHGV-0139789_44	PHROG	phrog_3366	NA	unknown function
UHGV-0139789_44	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0139789_44	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0139789_45	PHROG	phrog_8680	NA	unknown function
UHGV-0139789_45	UniRef90	UniRef90_UPI001C0F342A	NA	NA
UHGV-0139789_45	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0139789_45	Pfam	PF14386	NA	DUF4417
UHGV-0139789_45	Structural annotation	PF14386	NA	NA
UHGV-0139789_47	PHROG	phrog_18218	NA	unknown function
UHGV-0139789_47	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0139789_47	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0139789_47	Structural annotation	PF06946	NA	NA
UHGV-0139789_48	Structural annotation	PF18313	NA	NA
UHGV-0139789_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0139789_49	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0139789_50	PHROG	phrog_544	major head protein	head and packaging
UHGV-0139789_50	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0139789_50	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0139789_50	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0139789_50	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0139789_51	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0139789_51	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0139789_51	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0139789_51	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0139789_51	Structural annotation	PF06810	NA	NA
UHGV-0139789_52	PHROG	phrog_28802	NA	unknown function
UHGV-0139789_52	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0139789_53	PHROG	phrog_20016	NA	unknown function
UHGV-0139789_53	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0139789_53	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0139789_53	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0139789_54	PHROG	phrog_16490	NA	unknown function
UHGV-0139789_54	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0139789_55	PHROG	phrog_22984	NA	unknown function
UHGV-0139789_56	PHROG	phrog_21718	NA	unknown function
UHGV-0139789_56	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0139789_57	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0139789_57	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0139789_58	PHROG	phrog_3754	NA	unknown function
UHGV-0139789_58	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0139789_59	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0139789_59	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0139789_59	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0139789_59	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0139789_59	COG	COG2369	NA	NA
UHGV-0139789_59	Structural annotation	PF06152	NA	NA
UHGV-0139789_60	PHROG	phrog_533	portal protein	head and packaging
UHGV-0139789_60	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0139789_60	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0139789_60	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0139789_61	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0139789_61	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0139789_61	UniRef90	UniRef90_UPI001C0ECFC2	PBSX family phage terminase large subunit	NA
UHGV-0139789_61	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0139789_61	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0139789_61	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0139789_61	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0139789_61	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0139789_61	COG	COG1783	Phage terminase large subunit	NA
UHGV-0139789_61	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0139789_62	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0139789_62	AcrCatalog	cluster_11670	NA	NA
UHGV-0139789_69	UniRef90	UniRef90_A0A395XB56	NA	NA
UHGV-0139789_70	Structural annotation	PF17888	NA	NA
UHGV-0139789_71	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0139789_71	UniRef90	UniRef90_A0A8J6MB86	Lar family restriction alleviation protein	NA
UHGV-0139789_71	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0139789_71	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0139789_71	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0139789_71	Structural annotation	PF14354, NF007260	NA	NA