UHGV-0139876

Genome information

vOTU vOTU-020423

Genome length 39,726 bps

CDS count 58

Completeness 87.76% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139876
vOTU ID	vOTU-020423
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_393517
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.49
Jumbo phage	No

Genome content
Genome length	39,726 bps
GC content	53.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.80%
Average CDS length	646.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139876_1	eggNOG-mapper	571.MC52_14960	NA	NA
UHGV-0139876_2	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0139876_2	UniRef90	UniRef90_A0A898GMY6	Dcm methylase	NA
UHGV-0139876_2	eggNOG-mapper	1205683.CAKR01000025_gene3612	NA	NA
UHGV-0139876_2	Structural annotation	PF01728, MF_01547, NF008390, COG0293	NA	NA
UHGV-0139876_3	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0139876_3	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0139876_3	UniRef90	UniRef90_UPI0015E4B236	MT-A70 family methyltransferase	NA
UHGV-0139876_3	eggNOG-mapper	571.MC52_14970	Belongs to the MT-A70-like family	NA
UHGV-0139876_3	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0139876_3	Pfam	PF05063	MT-A70	MT-A70
UHGV-0139876_3	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0139876_3	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0139876_4	PHROG	phrog_1998	NA	unknown function
UHGV-0139876_4	UniRef90	UniRef90_A0A443WLA3	NA	NA
UHGV-0139876_4	eggNOG-mapper	1327941.T1SBI4_9CAUD	NA	NA
UHGV-0139876_4	Pfam	PF07026	NA	DUF1317
UHGV-0139876_5	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0139876_5	UniRef90	UniRef90_A0A2J5Q7Q8	Single-stranded DNA-binding protein	NA
UHGV-0139876_5	eggNOG-mapper	571.MC52_14985	ERF superfamily	NA
UHGV-0139876_5	Pfam	PF04404	ERF superfamily	ERF
UHGV-0139876_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0139876_5	Structural annotation	PF04404, MF_00984, TIGR00607, COG5055	NA	NA
UHGV-0139876_6	PHROG	phrog_2445	Erf recombination cofactor Arf	DNA, RNA and nucleotide metabolism
UHGV-0139876_6	eggNOG-mapper	90371.CY43_01685	Accessory recombination function protein	NA
UHGV-0139876_6	Pfam	PF17585	Accessory recombination function protein	Phage_Arf
UHGV-0139876_6	Structural annotation	PF17585	NA	NA
UHGV-0139876_7	PHROG	phrog_7311	NA	unknown function
UHGV-0139876_7	UniRef90	UniRef90_A0A1F2M9Q0	Thioredoxin reductase	NA
UHGV-0139876_8	PHROG	phrog_1376	NA	unknown function
UHGV-0139876_8	UniRef90	UniRef90_A0A8G2AC22	TolA protein	NA
UHGV-0139876_8	eggNOG-mapper	571.MC52_14995	NA	NA
UHGV-0139876_9	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139876_9	UniRef90	UniRef90_A0A2J4PUD6	HNHc domain-containing protein	NA
UHGV-0139876_9	eggNOG-mapper	232237.Q7Y5F9_9CAUD	HNH endonuclease	NA
UHGV-0139876_9	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0139876_9	Structural annotation	PF13392, PF00847	NA	NA
UHGV-0139876_10	PHROG	phrog_294	Kil protein for bacterial septation inhibition	other
UHGV-0139876_10	UniRef90	UniRef90_A0A377ZQ24	Membrane carboxypeptidase (Penicillin-binding protein)	NA
UHGV-0139876_10	eggNOG-mapper	1286170.RORB6_10275	NA	NA
UHGV-0139876_10	Structural annotation	MF_00085, NF008465, COG0231	NA	NA
UHGV-0139876_11	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0139876_11	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0139876_11	UniRef90	UniRef90_A0A377XLP0	XRE family transcriptional regulator	NA
UHGV-0139876_11	eggNOG-mapper	640513.Entas_2712	Peptidase S24-like	NA
UHGV-0139876_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0139876_11	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0139876_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0139876_12	UniRef90	UniRef90_A0A377XNL5	Transcriptional regulator	NA
UHGV-0139876_12	eggNOG-mapper	640513.Entas_2711	NA	NA
UHGV-0139876_12	Structural annotation	PF01381, NF041677, COG4197	NA	NA
UHGV-0139876_13	PHROG	phrog_725	CII-like regulator	transcription regulation
UHGV-0139876_13	UniRef90	UniRef90_A0A377XRD7	Gifsy-1 prophage cI	NA
UHGV-0139876_13	eggNOG-mapper	571.MC52_23710	NA	NA
UHGV-0139876_13	Pfam	PF05269	Bacteriophage CII protein	Phage_CII
UHGV-0139876_14	PHROG	phrog_1913	tail protein	tail
UHGV-0139876_14	UniRef90	UniRef90_A0A4U6LP71	NA	NA
UHGV-0139876_14	eggNOG-mapper	1286170.RORB6_10255	NA	NA
UHGV-0139876_15	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0139876_15	UniRef90	UniRef90_UPI0010333122	DNA replication protein	NA
UHGV-0139876_15	eggNOG-mapper	571.MC52_23705	NA	NA
UHGV-0139876_15	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0139876_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0139876_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0139876_16	UniRef90	UniRef90_A0A378FZ57	DNA helicase	NA
UHGV-0139876_16	eggNOG-mapper	571.MC52_15035	helicase	NA
UHGV-0139876_16	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0139876_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0139876_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0139876_16	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0139876_17	PHROG	phrog_1687	MarR family transcrition regulator	transcription regulation
UHGV-0139876_17	UniRef90	UniRef90_A0A8F3F0M4	MarR family transcriptional regulator	NA
UHGV-0139876_17	eggNOG-mapper	1286170.RORB6_10240	NA	NA
UHGV-0139876_17	Structural annotation	PF01978, MF_01819, NF041230, COG0640	NA	NA
UHGV-0139876_18	PHROG	phrog_18349	NA	unknown function
UHGV-0139876_18	eggNOG-mapper	329864.B8K1D5_9CAUD	Ead/Ea22-like protein	NA
UHGV-0139876_18	Structural annotation	PF11302	NA	NA
UHGV-0139876_20	PHROG	phrog_4838	NA	unknown function
UHGV-0139876_20	UniRef90	UniRef90_UPI001BD0C1DE	ead/Ea22-like family protein	NA
UHGV-0139876_20	eggNOG-mapper	1218086.BBNB01000014_gene2078	NA	NA
UHGV-0139876_20	Structural annotation	PF13935	NA	NA
UHGV-0139876_21	UniRef90	UniRef90_A0A8E7XEG9	SEC-C domain-containing protein	NA
UHGV-0139876_21	Pfam	PF02810	SEC-C motif	SEC-C
UHGV-0139876_22	PHROG	phrog_2960	NA	unknown function
UHGV-0139876_22	UniRef90	UniRef90_UPI001D18D2BC	NA	NA
UHGV-0139876_22	eggNOG-mapper	1147144.K7P6H7_9CAUD	NA	NA
UHGV-0139876_22	Pfam	PF04448	NA	DUF551
UHGV-0139876_23	PHROG	phrog_4220	NA	unknown function
UHGV-0139876_23	UniRef90	UniRef90_A0A0N8ISD8	Toluene hydroxylase	NA
UHGV-0139876_23	eggNOG-mapper	571.MC52_23660	NA	NA
UHGV-0139876_24	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0139876_24	UniRef90	UniRef90_A0A2H4TZ26	NA	NA
UHGV-0139876_24	eggNOG-mapper	571.MC52_15080	NA	NA
UHGV-0139876_24	Pfam	PF07105	NA	DUF1367
UHGV-0139876_24	Structural annotation	PF07105	NA	NA
UHGV-0139876_25	PHROG	phrog_288	NA	unknown function
UHGV-0139876_25	UniRef90	UniRef90_UPI0012B916C3	NinE family protein	NA
UHGV-0139876_25	eggNOG-mapper	716541.ECL_01315	NA	NA
UHGV-0139876_25	Pfam	PF05322	NINE Protein	NinE
UHGV-0139876_25	NCBIFam	NF007245.0	NinE family protein	NA
UHGV-0139876_26	KOfam	K07314	pphB; serine/threonine protein phosphatase 2 [EC:3.1.3.16]	NA
UHGV-0139876_26	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139876_26	UniRef90	UniRef90_A0A6B2J5H1	Serine/threonine protein phosphatase	NA
UHGV-0139876_26	eggNOG-mapper	1147144.K7P6H8_9CAUD	phosphoprotein phosphatase activity	NA
UHGV-0139876_26	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0139876_26	Structural annotation	PF12850, MF_01443, NF007425, COG0622	NA	NA
UHGV-0139876_27	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139876_27	UniRef90	UniRef90_A0A2Z2FBW4	Protein ninG	NA
UHGV-0139876_27	eggNOG-mapper	716541.ECL_03213	Bacteriophage Lambda NinG protein	NA
UHGV-0139876_27	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0139876_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0139876_27	Structural annotation	PF05766	NA	NA
UHGV-0139876_28	PHROG	phrog_1001	NA	unknown function
UHGV-0139876_28	eggNOG-mapper	1006000.GKAS_04456	NA	NA
UHGV-0139876_28	Structural annotation	PF00936, MF_00854, NF012018, COG4577	NA	NA
UHGV-0139876_29	PHROG	phrog_2705	NA	unknown function
UHGV-0139876_29	UniRef90	UniRef90_A0A5D6SXR0	YlcG family protein	NA
UHGV-0139876_29	eggNOG-mapper	571.MC52_15095	NA	NA
UHGV-0139876_29	NCBIFam	NF033498.1	YlcG family protein	NA
UHGV-0139876_29	Structural annotation	NF033498	NA	NA
UHGV-0139876_30	PHROG	phrog_304	anti-termination protein Q-like	transcription regulation
UHGV-0139876_30	UniRef90	UniRef90_UPI0015E512D6	bacteriophage antitermination protein Q	NA
UHGV-0139876_30	eggNOG-mapper	104623.Ser39006_04173	Phage antitermination protein Q	NA
UHGV-0139876_30	Pfam	PF06323	Phage antitermination protein Q	Phage_antiter_Q
UHGV-0139876_30	Structural annotation	PF06323	NA	NA
UHGV-0139876_31	PHROG	phrog_32723	NA	unknown function
UHGV-0139876_32	PHROG	phrog_785	holin	lysis
UHGV-0139876_32	UniRef90	UniRef90_A0A330YPJ8	Drug/metabolite transporter (DMT) superfamily permease	NA
UHGV-0139876_32	eggNOG-mapper	155864.EDL933_1818	LydA holin phage, holin superfamily III	NA
UHGV-0139876_32	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0139876_32	Structural annotation	PF16083	NA	NA
UHGV-0139876_33	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0139876_33	PHROG	phrog_7	endolysin	lysis
UHGV-0139876_33	UniRef90	UniRef90_A0A2A5MIQ5	Lysozyme	NA
UHGV-0139876_33	eggNOG-mapper	90371.CY43_05255	Phage lysozyme	NA
UHGV-0139876_33	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0139876_33	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0139876_33	HAMAP	MF_04110	Endolysin	NA
UHGV-0139876_33	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0139876_34	PHROG	phrog_8494	NA	unknown function
UHGV-0139876_34	eggNOG-mapper	279714.FuraDRAFT_2438	NA	NA
UHGV-0139876_35	PHROG	phrog_370	terminase small subunit	head and packaging
UHGV-0139876_35	UniRef90	UniRef90_A4W7N1	Putative bacteriophage protein	NA
UHGV-0139876_35	eggNOG-mapper	571.MC52_23605	DNA packaging	NA
UHGV-0139876_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0139876_35	Structural annotation	PF19824, MF_01506, NF041271, COG1579	NA	NA
UHGV-0139876_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0139876_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0139876_36	UniRef90	UniRef90_UPI00162A492D	terminase family protein	NA
UHGV-0139876_36	eggNOG-mapper	571.MC52_23600	phage Terminase large subunit	NA
UHGV-0139876_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0139876_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0139876_36	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG5323	NA	NA
UHGV-0139876_37	KOfam	K09961	NA	NA
UHGV-0139876_37	PHROG	phrog_146	portal protein	head and packaging
UHGV-0139876_37	UniRef90	UniRef90_UPI00191C9E84	NA	NA
UHGV-0139876_37	eggNOG-mapper	571.MC52_23595	NA	NA
UHGV-0139876_37	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0139876_37	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0139876_38	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0139876_38	eggNOG-mapper	399742.Ent638_1032	NA	NA
UHGV-0139876_38	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0139876_39	KOfam	K03574	mutT, NUDT15, MTH2; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]	NA
UHGV-0139876_39	PHROG	phrog_6216	NA	unknown function
UHGV-0139876_39	UniRef90	UniRef90_A0A7I7A8Q7	Nudix hydrolase domain-containing protein	NA
UHGV-0139876_39	eggNOG-mapper	571.MC52_23585	GDP-mannose mannosyl hydrolase activity	NA
UHGV-0139876_39	Pfam	PF00293	NUDIX domain	NUDIX
UHGV-0139876_39	Pfam	PF09979	NA	DUF2213
UHGV-0139876_39	COG	COG1051	ADP-ribose pyrophosphatase YjhB, NUDIX family	NA
UHGV-0139876_39	Structural annotation	PF00293, PF09979, MF_00297, NF001299, COG1051, COG3566	NA	NA
UHGV-0139876_40	PHROG	phrog_6268	NA	unknown function
UHGV-0139876_40	eggNOG-mapper	399742.Ent638_1034	NA	NA
UHGV-0139876_40	Structural annotation	PF12195	NA	NA
UHGV-0139876_41	PHROG	phrog_6671	NA	unknown function
UHGV-0139876_41	UniRef90	UniRef90_A0A1Q5V773	NA	NA
UHGV-0139876_41	eggNOG-mapper	571.MC52_23575	NA	NA
UHGV-0139876_41	Structural annotation	PF09950, MF_04119, TIGR01554, COG4834	NA	NA
UHGV-0139876_42	PHROG	phrog_6737	NA	unknown function
UHGV-0139876_42	eggNOG-mapper	571.MC52_23570	NA	NA
UHGV-0139876_43	PHROG	phrog_6356	NA	unknown function
UHGV-0139876_43	eggNOG-mapper	571.MC52_23565	NA	NA
UHGV-0139876_44	PHROG	phrog_6560	NA	unknown function
UHGV-0139876_44	eggNOG-mapper	571.MC52_23560	NA	NA
UHGV-0139876_45	PHROG	phrog_6359	NA	unknown function
UHGV-0139876_45	eggNOG-mapper	571.MC52_23555	NA	NA
UHGV-0139876_45	Structural annotation	PF16807, PF12206	NA	NA
UHGV-0139876_46	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0139876_46	eggNOG-mapper	571.MC52_23550	NA	NA
UHGV-0139876_46	Structural annotation	PF11863, NF040942, COG4386	NA	NA
UHGV-0139876_47	PHROG	phrog_6566	NA	unknown function
UHGV-0139876_47	eggNOG-mapper	571.MC52_23545	NA	NA
UHGV-0139876_47	Structural annotation	PF11681, TIGR02126, COG5437	NA	NA
UHGV-0139876_48	PHROG	phrog_11810	NA	unknown function
UHGV-0139876_48	eggNOG-mapper	571.MC52_23540	NA	NA
UHGV-0139876_49	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0139876_49	PHROG	phrog_7694	NA	unknown function
UHGV-0139876_49	UniRef90	UniRef90_UPI00064C6825	lytic transglycosylase domain-containing protein	NA
UHGV-0139876_49	eggNOG-mapper	571.MC52_23535	lytic transglycosylase activity	NA
UHGV-0139876_49	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0139876_49	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0139876_50	PHROG	phrog_7750	NA	unknown function
UHGV-0139876_50	eggNOG-mapper	399742.Ent638_1044	NA	NA
UHGV-0139876_51	PHROG	phrog_8737	NA	unknown function
UHGV-0139876_51	Structural annotation	PF06531	NA	NA
UHGV-0139876_52	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0139876_52	eggNOG-mapper	399742.Ent638_1046	NA	NA
UHGV-0139876_52	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0139876_53	eggNOG-mapper	399742.Ent638_1047	NA	NA
UHGV-0139876_53	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-0139876_54	PHROG	phrog_7986	NA	unknown function
UHGV-0139876_54	eggNOG-mapper	571.MC52_23510	NA	NA
UHGV-0139876_55	KOfam	K03178	UBE1, UBA1; ubiquitin-activating enzyme E1 [EC:6.2.1.45]	NA
UHGV-0139876_55	PHROG	phrog_6	baseplate protein	tail
UHGV-0139876_55	UniRef90	UniRef90_A0A3Q9U5S4	Baseplate J-like family protein	NA
UHGV-0139876_55	eggNOG-mapper	571.MC52_23505	Baseplate J-like protein	NA
UHGV-0139876_55	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0139876_55	Pfam	PF16190	Ubiquitin-activating enzyme E1 FCCH domain	E1_FCCH
UHGV-0139876_55	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0139876_56	PHROG	phrog_8212	NA	unknown function
UHGV-0139876_56	eggNOG-mapper	571.MC52_23500	NA	NA
UHGV-0139876_56	Structural annotation	PF11041	NA	NA
UHGV-0139876_57	PHROG	phrog_33858	NA	unknown function
UHGV-0139876_57	eggNOG-mapper	1214065.BAGV01000077_gene1406	NA	NA
UHGV-0139876_57	COG	COG4461	Lysozyme inhibitor LprI	NA
UHGV-0139876_58	PHROG	phrog_19652	NA	unknown function
UHGV-0139876_58	eggNOG-mapper	1204521.I7B6L0_9CAUD	virus tail, fiber	NA