UHGV-0139965

Genome information

Genome length 56,738 bps

CDS count 78

Completeness 76.97% (medium-quality)

geNomad score 0.9659

Prediction confidence Confident

Genome information
Genome ID	UHGV-0139965
vOTU ID	vOTU-022327
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_383804
BioSample	SAMN04209236
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	76.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9659
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.03
Jumbo phage	No

Genome content
Genome length	56,738 bps
GC content	40.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	91.49%
Average CDS length	669.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0139965_2	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0139965_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0139965_2	UniRef90	UniRef90_S3YCA5	Core-binding (CB) domain-containing protein	NA
UHGV-0139965_2	eggNOG-mapper	484018.BACPLE_00687	Belongs to the 'phage' integrase family	NA
UHGV-0139965_2	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0139965_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0139965_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0139965_2	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-0139965_3	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0139965_3	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0139965_3	UniRef90	UniRef90_B5CVF7	Beta sliding clamp	NA
UHGV-0139965_3	eggNOG-mapper	484018.BACPLE_00686	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0139965_3	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0139965_3	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0139965_3	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0139965_3	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-0139965_3	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0139965_3	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0139965_4	PHROG	phrog_7445	NA	unknown function
UHGV-0139965_4	UniRef90	UniRef90_UPI001C02E32F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0139965_4	eggNOG-mapper	484018.BACPLE_00685	PcfK-like protein	NA
UHGV-0139965_4	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0139965_4	Structural annotation	PF14058	NA	NA
UHGV-0139965_5	PHROG	phrog_8470	NA	unknown function
UHGV-0139965_5	UniRef90	UniRef90_UPI00189C6D95	PcfJ domain-containing protein	NA
UHGV-0139965_5	eggNOG-mapper	484018.BACPLE_00684	NA	NA
UHGV-0139965_5	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0139965_5	Structural annotation	PF14284	NA	NA
UHGV-0139965_6	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0139965_6	UniRef90	UniRef90_A0A485AT41	Primosomal protein I	NA
UHGV-0139965_6	eggNOG-mapper	484018.BACPLE_00683	NA	NA
UHGV-0139965_6	Structural annotation	PF21552, NF000244, COG0735	NA	NA
UHGV-0139965_7	PHROG	phrog_35728	NA	unknown function
UHGV-0139965_7	UniRef90	UniRef90_F3QQU4	Conserved domain protein	NA
UHGV-0139965_7	eggNOG-mapper	484018.BACPLE_00682	NA	NA
UHGV-0139965_7	Pfam	PF20338	NA	DUF6633
UHGV-0139965_9	eggNOG-mapper	484018.BACPLE_00680	NA	NA
UHGV-0139965_9	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-0139965_12	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0139965_12	UniRef90	UniRef90_A0A844JIW7	ANT domain-containing protein	NA
UHGV-0139965_12	eggNOG-mapper	99179.B5TRB0_9CAUD	DNA binding	NA
UHGV-0139965_12	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0139965_12	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0139965_12	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0139965_14	KOfam	K01495	GCH1, folE; GTP cyclohydrolase IA [EC:3.5.4.16]	NA
UHGV-0139965_14	PHROG	phrog_2197	GTP cyclohydrolase	other
UHGV-0139965_14	UniRef90	UniRef90_A0A5J4P8Z9	GTP cyclohydrolase I (Fragment)	NA
UHGV-0139965_14	eggNOG-mapper	484018.BACPLE_00674	GTP cyclohydrolase I	NA
UHGV-0139965_14	Pfam	PF01227	GTP cyclohydrolase I	GTP_cyclohydroI
UHGV-0139965_14	COG	COG0302	GTP cyclohydrolase I	NA
UHGV-0139965_15	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0139965_15	UniRef90	UniRef90_A0A4Q5G6H1	Helix-turn-helix domain-containing protein	NA
UHGV-0139965_15	eggNOG-mapper	484018.BACPLE_00673	transposase activity	NA
UHGV-0139965_15	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0139965_15	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0139965_15	Structural annotation	PF07141	NA	NA
UHGV-0139965_16	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0139965_16	UniRef90	UniRef90_A0A416VUC6	Terminase large subunit	NA
UHGV-0139965_16	eggNOG-mapper	484018.BACPLE_00672	domain protein	NA
UHGV-0139965_16	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0139965_16	COG	COG5410	NA	NA
UHGV-0139965_16	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0139965_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0139965_17	UniRef90	UniRef90_S3YC94	SPP1 family phage portal protein	NA
UHGV-0139965_17	eggNOG-mapper	484018.BACPLE_00670	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0139965_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0139965_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0139965_18	PHROG	phrog_35295	NA	unknown function
UHGV-0139965_18	UniRef90	UniRef90_A0A844JHN9	NAD(+)--protein-arginine ADP-ribosyltransferase	NA
UHGV-0139965_18	eggNOG-mapper	484018.BACPLE_00669	NA	NA
UHGV-0139965_18	Pfam	PF01129	NAD:arginine ADP-ribosyltransferase	ART
UHGV-0139965_18	Structural annotation	PF03496, PF06152, MF_04139, NF041404	NA	NA
UHGV-0139965_20	eggNOG-mapper	484018.BACPLE_00667	NA	NA
UHGV-0139965_21	PHROG	phrog_20501	NA	unknown function
UHGV-0139965_21	eggNOG-mapper	484018.BACPLE_00666	NA	NA
UHGV-0139965_22	PHROG	phrog_29	major head protein	head and packaging
UHGV-0139965_22	UniRef90	UniRef90_A0A416VUG2	Major capsid protein E	NA
UHGV-0139965_22	eggNOG-mapper	484018.BACPLE_00665	Phage major capsid protein E	NA
UHGV-0139965_22	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0139965_22	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0139965_23	eggNOG-mapper	484018.BACPLE_00664	NA	NA
UHGV-0139965_23	Structural annotation	PF20449	NA	NA
UHGV-0139965_24	eggNOG-mapper	484018.BACPLE_00663	NA	NA
UHGV-0139965_24	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0139965_25	PHROG	phrog_5377	NA	unknown function
UHGV-0139965_25	UniRef90	UniRef90_UPI00189E77B6	HK97 gp10 family phage protein	NA
UHGV-0139965_25	eggNOG-mapper	484018.BACPLE_00662	NA	NA
UHGV-0139965_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0139965_26	PHROG	phrog_5597	NA	unknown function
UHGV-0139965_26	eggNOG-mapper	484018.BACPLE_00661	NA	NA
UHGV-0139965_26	Structural annotation	PF09646, COG3167	NA	NA
UHGV-0139965_27	PHROG	phrog_6767	NA	unknown function
UHGV-0139965_27	eggNOG-mapper	484018.BACPLE_00660	NA	NA
UHGV-0139965_27	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0139965_28	eggNOG-mapper	484018.BACPLE_00659	NA	NA
UHGV-0139965_29	PHROG	phrog_21917	NA	unknown function
UHGV-0139965_29	UniRef90	UniRef90_E5UUY1	PhageMin_Tail domain-containing protein	NA
UHGV-0139965_29	eggNOG-mapper	484018.BACPLE_00656	Phage-related minor tail protein	NA
UHGV-0139965_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0139965_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0139965_29	COG	COG1511	NA	NA
UHGV-0139965_29	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0139965_30	PHROG	phrog_10156	NA	unknown function
UHGV-0139965_30	eggNOG-mapper	484018.BACPLE_00655	NA	NA
UHGV-0139965_31	eggNOG-mapper	484018.BACPLE_00654	Pectate lyase	NA
UHGV-0139965_31	COG	COG3866	Pectate lyase	NA
UHGV-0139965_31	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0139965_32	PHROG	phrog_17422	NA	unknown function
UHGV-0139965_32	eggNOG-mapper	484018.BACPLE_00653	Phage minor structural protein	NA
UHGV-0139965_32	COG	COG4926	Phage-related protein	NA
UHGV-0139965_33	PHROG	phrog_3267	tail protein	tail
UHGV-0139965_33	Structural annotation	PF02010, MF_04116, NF041431, COG1361	NA	NA
UHGV-0139965_35	PHROG	phrog_3267	tail protein	tail
UHGV-0139965_35	Structural annotation	PF16407, MF_04116, NF033597	NA	NA
UHGV-0139965_36	eggNOG-mapper	1347393.HG726027_gene2419	Phage minor structural protein	NA
UHGV-0139965_36	COG	COG4926	Phage-related protein	NA
UHGV-0139965_36	Structural annotation	PF16562, PF20944, NF041740	NA	NA
UHGV-0139965_43	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0139965_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0139965_43	UniRef90	UniRef90_A0A108T4G0	Putative tyrosine recombinase, XerD-like	NA
UHGV-0139965_43	eggNOG-mapper	357276.EL88_22680	Arm DNA-binding domain	NA
UHGV-0139965_43	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0139965_43	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0139965_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0139965_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0139965_43	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0139965_45	PHROG	phrog_32423	NA	unknown function
UHGV-0139965_45	UniRef90	UniRef90_UPI001105E37C	DNA replication initiation control protein YabA	NA
UHGV-0139965_45	eggNOG-mapper	449673.BACSTE_00852	NA	NA
UHGV-0139965_46	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0139965_46	PHROG	phrog_894	endolysin	lysis
UHGV-0139965_46	UniRef90	UniRef90_S3ZKM2	Peptidase_M15_3 domain-containing protein	NA
UHGV-0139965_46	eggNOG-mapper	449673.BACSTE_00851	Peptidase M15	NA
UHGV-0139965_46	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0139965_46	COG	COG3108	NA	NA
UHGV-0139965_46	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0139965_47	PHROG	phrog_26448	NA	unknown function
UHGV-0139965_47	eggNOG-mapper	762984.HMPREF9445_00190	NA	NA
UHGV-0139965_47	Pfam	PF20647	NA	DUF6808
UHGV-0139965_47	Structural annotation	PF20647	NA	NA
UHGV-0139965_49	eggNOG-mapper	449673.BACSTE_00845	NA	NA
UHGV-0139965_50	PHROG	phrog_19698	NA	unknown function
UHGV-0139965_50	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-0139965_52	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0139965_52	PHROG	phrog_435	endolysin	lysis
UHGV-0139965_52	UniRef90	UniRef90_S3ZJE6	MurNAc-LAA domain-containing protein	NA
UHGV-0139965_52	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-0139965_52	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0139965_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0139965_52	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0139965_53	PHROG	phrog_14010	NA	unknown function
UHGV-0139965_53	eggNOG-mapper	484018.BACPLE_02424	NA	NA
UHGV-0139965_53	Pfam	PF20186	NA	DUF6549
UHGV-0139965_53	Structural annotation	PF20186	NA	NA
UHGV-0139965_54	PHROG	phrog_28609	NA	unknown function
UHGV-0139965_54	UniRef90	UniRef90_S3YTA3	VRR-NUC domain-containing protein	NA
UHGV-0139965_54	eggNOG-mapper	484018.BACPLE_02423	VRR_NUC	NA
UHGV-0139965_54	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0139965_55	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0139965_55	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0139965_55	UniRef90	UniRef90_S3YGT9	PAPS_reduct domain-containing protein	NA
UHGV-0139965_55	eggNOG-mapper	411901.BACCAC_01181	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0139965_55	PADLOC	SspD_00001	SspD	SSP
UHGV-0139965_55	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0139965_55	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0139965_55	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0139965_56	PHROG	phrog_874	NA	unknown function
UHGV-0139965_56	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0139965_56	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0139965_57	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-0139965_59	PHROG	phrog_22725	NA	unknown function
UHGV-0139965_59	eggNOG-mapper	476272.RUMHYD_03319	NA	NA
UHGV-0139965_63	PHROG	phrog_17519	NA	unknown function
UHGV-0139965_63	UniRef90	UniRef90_A0A174S5G9	NA	NA
UHGV-0139965_63	eggNOG-mapper	484018.BACPLE_02420	NA	NA
UHGV-0139965_63	Pfam	PF12083	NA	DUF3560
UHGV-0139965_63	Structural annotation	PF12083	NA	NA
UHGV-0139965_64	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0139965_64	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0139965_64	UniRef90	UniRef90_B5D093	Helicase C-terminal domain protein	NA
UHGV-0139965_64	eggNOG-mapper	484018.BACPLE_02416	SNF2 family N-terminal domain	NA
UHGV-0139965_64	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0139965_64	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0139965_64	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0139965_64	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0139965_64	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0139965_65	eggNOG-mapper	484018.BACPLE_02415	NA	NA
UHGV-0139965_67	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0139965_67	eggNOG-mapper	484018.BACPLE_02413	NA	NA
UHGV-0139965_67	Structural annotation	PF11056	NA	NA
UHGV-0139965_68	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0139965_68	UniRef90	UniRef90_A0A7J5LDP5	HNHc domain-containing protein	NA
UHGV-0139965_68	eggNOG-mapper	420324.KI911970_gene1424	HNH endonuclease	NA
UHGV-0139965_68	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0139965_69	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0139965_69	UniRef90	UniRef90_UPI0018A0FDEF	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0139965_69	eggNOG-mapper	484018.BACPLE_02412	NA	NA
UHGV-0139965_69	Structural annotation	PF06023, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0139965_70	eggNOG-mapper	484018.BACPLE_02411	NA	NA
UHGV-0139965_71	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0139965_71	UniRef90	UniRef90_A0A7J5LDS0	Serine/threonine protein kinase	NA
UHGV-0139965_71	eggNOG-mapper	484018.BACPLE_02410	RecT family	NA
UHGV-0139965_71	Pfam	PF03837	RecT family	RecT
UHGV-0139965_71	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0139965_71	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0139965_73	eggNOG-mapper	484018.BACPLE_02408	NA	NA
UHGV-0139965_74	UniRef90	UniRef90_B5D084	Transcriptional regulator, LuxR family	NA
UHGV-0139965_74	eggNOG-mapper	484018.BACPLE_02407	helix_turn_helix, Lux Regulon	NA
UHGV-0139965_74	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0139965_75	UniRef90	UniRef90_A0A3E4NCV5	Transcriptional regulator	NA
UHGV-0139965_76	eggNOG-mapper	435591.BDI_0872	NA	NA
UHGV-0139965_77	PHROG	phrog_15742	NA	unknown function
UHGV-0139965_77	eggNOG-mapper	1235788.C802_00094	NA	NA
UHGV-0139965_78	PHROG	phrog_11704	transposase	integration and excision
UHGV-0139965_78	UniRef90	UniRef90_H1HNR0	DDE_Tnp_1 domain-containing protein	NA
UHGV-0139965_78	eggNOG-mapper	866771.HMPREF9296_0370	NA	NA
UHGV-0139965_78	Pfam	PF01609	Transposase DDE domain	DDE_Tnp_1
UHGV-0139965_78	NCBIFam	NF033539.1	IS1380 family transposase	NA
UHGV-0139965_78	Structural annotation	PF13701, NF033539, COG5659	NA	NA