UHGV-0140094

Genome information

Genome length 29,364 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9692

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140094
vOTU ID	vOTU-046030
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_358022
BioSample	SAMN02675503
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9692
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.93
Jumbo phage	No

Genome content
Genome length	29,364 bps
GC content	43.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.29%
Average CDS length	555.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140094_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0140094_1	UniRef90	UniRef90_A0A374LFF8	Class V aminotransferase	NA
UHGV-0140094_1	eggNOG-mapper	913865.DOT_0576	NA	NA
UHGV-0140094_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0140094_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0140094_2	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0140094_2	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0140094_2	UniRef90	UniRef90_A0A845RJ44	DNA methyltransferase	NA
UHGV-0140094_2	eggNOG-mapper	411468.CLOSCI_01467	Belongs to the MT-A70-like family	NA
UHGV-0140094_2	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0140094_2	Pfam	PF05063	MT-A70	MT-A70
UHGV-0140094_2	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0140094_2	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0140094_5	PHROG	phrog_5781	NA	unknown function
UHGV-0140094_5	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0140094_5	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0140094_5	Pfam	PF14359	NA	DUF4406
UHGV-0140094_5	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0140094_5	Structural annotation	PF14359, MF_03036, NF007783, COG3613	NA	NA
UHGV-0140094_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0140094_7	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0140094_7	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0140094_8	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0140094_8	UniRef90	UniRef90_A0A6B9SX71	Transposase/terminase small subunit	NA
UHGV-0140094_8	eggNOG-mapper	1262449.CP6013_2071	transposase activity	NA
UHGV-0140094_8	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0140094_8	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0140094_8	Structural annotation	PF07141	NA	NA
UHGV-0140094_12	PHROG	phrog_1863	NA	unknown function
UHGV-0140094_12	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0140094_13	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0140094_13	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0140094_13	UniRef90	UniRef90_A0A2V2FIT2	Peptidase_M23 domain-containing protein	NA
UHGV-0140094_13	eggNOG-mapper	665956.HMPREF1032_00102	heme binding	NA
UHGV-0140094_13	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0140094_13	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0140094_13	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0140094_13	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0140094_13	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0140094_14	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0140094_14	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0140094_14	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0140094_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0140094_14	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0140094_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0140094_16	UniRef90	UniRef90_A0A843HV62	Terminase large subunit	NA
UHGV-0140094_16	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0140094_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0140094_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0140094_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0140094_16	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0140094_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0140094_17	UniRef90	UniRef90_A0A6B9SS26	Portal protein	NA
UHGV-0140094_17	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0140094_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0140094_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0140094_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0140094_18	KOfam	K06904	NA	NA
UHGV-0140094_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0140094_18	UniRef90	UniRef90_UPI0007174281	HK97 family phage prohead protease	NA
UHGV-0140094_18	eggNOG-mapper	293826.Amet_2413	Phage prohead protease, HK97 family	NA
UHGV-0140094_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0140094_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0140094_18	COG	COG3740	Phage head maturation protease	NA
UHGV-0140094_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0140094_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0140094_19	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0140094_19	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0140094_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0140094_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0140094_19	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0140094_20	UniRef90	UniRef90_A0A843GGX3	Phage head-tail connector protein	NA
UHGV-0140094_20	eggNOG-mapper	1196322.A370_05715	NA	NA
UHGV-0140094_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0140094_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0140094_21	UniRef90	UniRef90_A0A415G8B6	Head-tail adaptor protein	NA
UHGV-0140094_21	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0140094_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0140094_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0140094_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0140094_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0140094_22	UniRef90	UniRef90_A0A6B9STC9	Tail completion protein	NA
UHGV-0140094_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0140094_22	Structural annotation	TIGR01725	NA	NA
UHGV-0140094_23	Structural annotation	PF05657	NA	NA
UHGV-0140094_24	PHROG	phrog_88	major tail protein	tail
UHGV-0140094_24	UniRef90	UniRef90_A0A6B9SV22	Major tail protein	NA
UHGV-0140094_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0140094_24	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0140094_27	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0140094_27	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0140094_27	COG	COG5283	Phage-related tail protein	NA
UHGV-0140094_27	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0140094_28	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0140094_28	UniRef90	UniRef90_A0A843HU58	Phage tail family protein	NA
UHGV-0140094_28	eggNOG-mapper	411473.RUMCAL_03181	Phage tail protein	NA
UHGV-0140094_28	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0140094_28	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0140094_29	PHROG	phrog_538	minor tail protein	tail
UHGV-0140094_29	UniRef90	UniRef90_A0A843HVV8	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0140094_29	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0140094_29	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0140094_29	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0140094_30	PHROG	phrog_1220	head protein	head and packaging
UHGV-0140094_30	UniRef90	UniRef90_A0A1K1YMU3	Leucine rich repeat-containing protein	NA
UHGV-0140094_30	eggNOG-mapper	1033737.CAEV01000028_gene283	NA	NA
UHGV-0140094_30	Structural annotation	PF03906, PF20747	NA	NA
UHGV-0140094_35	KOfam	K14059	int; integrase	NA
UHGV-0140094_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0140094_35	UniRef90	UniRef90_A0A3D5PC96	Site-specific integrase	NA
UHGV-0140094_35	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0140094_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140094_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0140094_35	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0140094_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140094_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140094_36	UniRef90	UniRef90_A0A174DL41	Cro/CI family transcriptional regulator	NA
UHGV-0140094_36	eggNOG-mapper	887929.HMP0721_0749	Peptidase S24-like	NA
UHGV-0140094_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140094_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140094_36	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0140094_37	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0140094_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140094_37	UniRef90	UniRef90_R9MG03	HTH cro/C1-type domain-containing protein	NA
UHGV-0140094_37	eggNOG-mapper	1235799.C818_02407	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140094_37	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0140094_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140094_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140094_42	eggNOG-mapper	1235792.C808_01043	DnaD domain protein	NA
UHGV-0140094_42	Pfam	PF19481	NA	DUF6017
UHGV-0140094_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0140094_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0140094_43	UniRef90	UniRef90_R6RCC6	Gp31	NA
UHGV-0140094_43	eggNOG-mapper	1414720.CBYM010000002_gene589	NA	NA
UHGV-0140094_43	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0140094_44	PHROG	phrog_824	NA	unknown function
UHGV-0140094_44	UniRef90	UniRef90_A0A7G8TE01	VRR-NUC domain-containing protein	NA
UHGV-0140094_44	eggNOG-mapper	1414720.CBYM010000002_gene588	VRR-NUC domain	NA
UHGV-0140094_44	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0140094_44	Structural annotation	PF08774	NA	NA
UHGV-0140094_45	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140094_45	UniRef90	UniRef90_UPI001D0B2024	ASCH domain-containing protein	NA
UHGV-0140094_45	eggNOG-mapper	1582152.A0A0A8WI22_9CAUD	NA	NA
UHGV-0140094_45	Pfam	PF12961	NA	DUF3850
UHGV-0140094_45	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0140094_47	PHROG	phrog_24518	NA	unknown function
UHGV-0140094_47	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0140094_49	PHROG	phrog_38338	NA	unknown function
UHGV-0140094_49	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0140094_49	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-0140094_49	Pfam	PF14058	PcfK-like protein	PcfK