UHGV-0140231

Genome information

Genome length 32,484 bps

CDS count 54

Completeness 67.80% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140231
vOTU ID	vOTU-016300
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_376079
BioSample	SAMN03653683
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.94
Jumbo phage	No

Genome content
Genome length	32,484 bps
GC content	36.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.95%
Average CDS length	569.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140231_1	PHROG	phrog_4577	tail protein	tail
UHGV-0140231_1	eggNOG-mapper	1104325.M7W_1368	NA	NA
UHGV-0140231_1	Structural annotation	NF041901	NA	NA
UHGV-0140231_2	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0140231_2	UniRef90	UniRef90_A0A0M2B4A6	Phage minor structural protein	NA
UHGV-0140231_2	eggNOG-mapper	768486.EHR_00575	Prophage endopeptidase tail	NA
UHGV-0140231_2	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0140231_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0140231_2	COG	COG4926	Phage-related protein	NA
UHGV-0140231_2	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0140231_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0140231_3	UniRef90	UniRef90_UPI001D0B70BE	phage tail family protein	NA
UHGV-0140231_3	eggNOG-mapper	768486.EHR_00580	Phage tail protein	NA
UHGV-0140231_3	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0140231_3	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0140231_4	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0140231_4	UniRef90	UniRef90_C9APV9	PhageMin_Tail domain-containing protein	NA
UHGV-0140231_4	eggNOG-mapper	768486.EHR_00585	Phage-related minor tail protein	NA
UHGV-0140231_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0140231_4	COG	COG3953	SLT domain protein	NA
UHGV-0140231_5	PHROG	phrog_17321	NA	unknown function
UHGV-0140231_5	UniRef90	UniRef90_UPI001D09C291	phage tail tape measure protein	NA
UHGV-0140231_5	eggNOG-mapper	1158614.I592_00631	Phage-related minor tail protein	NA
UHGV-0140231_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0140231_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0140231_5	COG	COG3953	SLT domain protein	NA
UHGV-0140231_6	PHROG	phrog_10068	NA	unknown function
UHGV-0140231_6	UniRef90	UniRef90_C9B4L9	Predicted protein	NA
UHGV-0140231_6	eggNOG-mapper	1140001.I571_01754	NA	NA
UHGV-0140231_7	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0140231_7	UniRef90	UniRef90_C9APW1	Predicted protein	NA
UHGV-0140231_7	eggNOG-mapper	1158614.I592_00629	NA	NA
UHGV-0140231_7	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0140231_8	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0140231_8	PHROG	phrog_341	major tail protein	tail
UHGV-0140231_8	UniRef90	UniRef90_A0A8B2RPZ7	BIG2 domain-containing protein	NA
UHGV-0140231_8	eggNOG-mapper	1158614.I592_00628	PFAM Bacterial Ig-like domain (group 2)	NA
UHGV-0140231_8	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0140231_8	COG	COG5492	NA	NA
UHGV-0140231_8	Structural annotation	PF02368, MF_04116, TIGR04225, COG5492	NA	NA
UHGV-0140231_9	PHROG	phrog_88	major tail protein	tail
UHGV-0140231_9	UniRef90	UniRef90_A0A0M2B3T9	Putative phage major tail protein	NA
UHGV-0140231_9	eggNOG-mapper	1158614.I592_00627	Phage tail tube protein	NA
UHGV-0140231_9	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0140231_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0140231_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0140231_10	PHROG	phrog_78	tail terminator	connector
UHGV-0140231_10	UniRef90	UniRef90_A0A7Z9DHX8	Gp10 family protein	NA
UHGV-0140231_10	eggNOG-mapper	1158614.I592_00626	NA	NA
UHGV-0140231_10	Structural annotation	PF05657	NA	NA
UHGV-0140231_11	UniRef90	UniRef90_A0A0M2B3I2	Phage protein, HK97 gp10 family	NA
UHGV-0140231_11	eggNOG-mapper	1158614.I592_00625	NA	NA
UHGV-0140231_11	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0140231_12	UniRef90	UniRef90_UPI0008A1CBE9	phage head-tail adapter protein	NA
UHGV-0140231_12	eggNOG-mapper	768486.EHR_00620	NA	NA
UHGV-0140231_12	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0140231_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0140231_13	UniRef90	UniRef90_C9APW7	Predicted protein	NA
UHGV-0140231_13	eggNOG-mapper	431943.CKL_4064	Phage gp6-like head-tail connector protein	NA
UHGV-0140231_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0140231_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0140231_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0140231_14	UniRef90	UniRef90_A0A0M2B3T3	Phage capsid family protein	NA
UHGV-0140231_14	eggNOG-mapper	768486.EHR_00635	Phage capsid family	NA
UHGV-0140231_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0140231_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0140231_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0140231_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0140231_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0140231_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0140231_15	UniRef90	UniRef90_A0A0M2B3B2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0140231_15	eggNOG-mapper	768486.EHR_00640	Clp protease	NA
UHGV-0140231_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0140231_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0140231_15	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0140231_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0140231_16	UniRef90	UniRef90_A0A0M2B3H8	Phage portal protein, HK97 family	NA
UHGV-0140231_16	eggNOG-mapper	768486.EHR_00645	portal protein	NA
UHGV-0140231_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0140231_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0140231_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0140231_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0140231_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0140231_17	UniRef90	UniRef90_I6T7J1	Phage terminase-like protein, large subunit	NA
UHGV-0140231_17	eggNOG-mapper	768486.EHR_00650	Phage Terminase	NA
UHGV-0140231_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0140231_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0140231_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0140231_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0140231_18	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0140231_18	UniRef90	UniRef90_UPI001E3150F1	phage terminase small subunit P27 family	NA
UHGV-0140231_18	eggNOG-mapper	768486.EHR_00655	phage terminase, small subunit	NA
UHGV-0140231_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0140231_18	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0140231_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0140231_19	eggNOG-mapper	931276.Cspa_c31100	NA	NA
UHGV-0140231_20	UniRef90	UniRef90_C9APX4	Predicted protein	NA
UHGV-0140231_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0140231_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140231_21	UniRef90	UniRef90_A0A3F3NT65	HNHc domain-containing protein	NA
UHGV-0140231_21	eggNOG-mapper	768486.EHR_00665	HNH endonuclease	NA
UHGV-0140231_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0140231_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0140231_22	PHROG	phrog_23915	NA	unknown function
UHGV-0140231_22	eggNOG-mapper	1158614.I592_00615	NA	NA
UHGV-0140231_23	PHROG	phrog_11846	NA	unknown function
UHGV-0140231_23	UniRef90	UniRef90_C9A192	Predicted protein	NA
UHGV-0140231_23	eggNOG-mapper	768486.EHR_00675	NA	NA
UHGV-0140231_24	PHROG	phrog_1202	NA	unknown function
UHGV-0140231_24	UniRef90	UniRef90_C9APX8	Predicted protein	NA
UHGV-0140231_24	eggNOG-mapper	1140001.I571_01149	NA	NA
UHGV-0140231_24	Structural annotation	PF18789	NA	NA
UHGV-0140231_25	PHROG	phrog_9904	NA	unknown function
UHGV-0140231_25	UniRef90	UniRef90_A0A132P4F8	Thymidylate synthase	NA
UHGV-0140231_27	PHROG	phrog_2131	NA	unknown function
UHGV-0140231_27	UniRef90	UniRef90_O34053	ORF22	NA
UHGV-0140231_27	eggNOG-mapper	85154.O34053_BPO12	NA	NA
UHGV-0140231_28	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0140231_28	UniRef90	UniRef90_Q47836	Putative autolysin regulatory protein ArpU	NA
UHGV-0140231_28	eggNOG-mapper	1104325.M7W_1345	NA	NA
UHGV-0140231_28	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0140231_28	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0140231_29	PHROG	phrog_3302	NA	unknown function
UHGV-0140231_29	UniRef90	UniRef90_Q47835	ArpT	NA
UHGV-0140231_29	eggNOG-mapper	1140001.I571_02100	NA	NA
UHGV-0140231_29	Structural annotation	PF09953, MF_00906, NF000331, COG4873	NA	NA
UHGV-0140231_33	PHROG	phrog_10711	NA	unknown function
UHGV-0140231_33	UniRef90	UniRef90_Q47834	ArpS	NA
UHGV-0140231_33	eggNOG-mapper	768486.EHR_09515	NA	NA
UHGV-0140231_34	PHROG	phrog_29063	NA	unknown function
UHGV-0140231_35	PHROG	phrog_121	NA	unknown function
UHGV-0140231_35	UniRef90	UniRef90_UPI001F060DB0	NA	NA
UHGV-0140231_35	eggNOG-mapper	1158604.I591_00394	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0140231_35	Pfam	PF07852	NA	DUF1642
UHGV-0140231_35	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0140231_35	Structural annotation	PF07852	NA	NA
UHGV-0140231_36	PHROG	phrog_1083	NA	unknown function
UHGV-0140231_36	UniRef90	UniRef90_A0A242IFJ0	NA	NA
UHGV-0140231_36	eggNOG-mapper	565664.EFXG_01151	NA	NA
UHGV-0140231_36	Pfam	PF06600	NA	DUF1140
UHGV-0140231_36	Structural annotation	PF06600, COG5420	NA	NA
UHGV-0140231_37	PHROG	phrog_5224	NA	unknown function
UHGV-0140231_37	eggNOG-mapper	768486.EHR_09495	NA	NA
UHGV-0140231_37	Structural annotation	PF04936	NA	NA
UHGV-0140231_38	PHROG	phrog_7773	NA	unknown function
UHGV-0140231_38	UniRef90	UniRef90_A0A7V7KSZ0	Antitoxin	NA
UHGV-0140231_38	eggNOG-mapper	1104325.M7W_2064	NA	NA
UHGV-0140231_38	Structural annotation	PF19824, MF_01506, NF011893	NA	NA
UHGV-0140231_39	PHROG	phrog_5224	NA	unknown function
UHGV-0140231_39	eggNOG-mapper	565664.EFXG_01148	NA	NA
UHGV-0140231_39	Structural annotation	PF04936	NA	NA
UHGV-0140231_40	PHROG	phrog_21958	NA	unknown function
UHGV-0140231_40	eggNOG-mapper	565664.EFXG_01147	NA	NA
UHGV-0140231_40	Structural annotation	PF07870, NF011893, COG3461	NA	NA
UHGV-0140231_41	PHROG	phrog_26325	NA	unknown function
UHGV-0140231_41	eggNOG-mapper	565664.EFXG_01146	NA	NA
UHGV-0140231_42	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0140231_42	UniRef90	UniRef90_A0A133CKH9	Helix-turn-helix domain-containing protein	NA
UHGV-0140231_42	eggNOG-mapper	565664.EFXG_01145	Helix-turn-helix domain	NA
UHGV-0140231_42	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0140231_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0140231_42	Structural annotation	PF04492, MF_01819, NF040939, COG3355	NA	NA
UHGV-0140231_43	PHROG	phrog_398	NA	unknown function
UHGV-0140231_43	UniRef90	UniRef90_UPI00115945F6	putative HNHc nuclease	NA
UHGV-0140231_43	eggNOG-mapper	565664.EFXG_01144	Putative HNHc nuclease	NA
UHGV-0140231_43	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0140231_43	Structural annotation	PF16784	NA	NA
UHGV-0140231_44	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0140231_44	UniRef90	UniRef90_A0A1V8Y9M0	Topoisomerase	NA
UHGV-0140231_44	eggNOG-mapper	1158604.I591_00385	NA	NA
UHGV-0140231_44	Pfam	PF06378	NA	DUF1071
UHGV-0140231_44	Structural annotation	PF06378, TIGR00607, COG4712	NA	NA
UHGV-0140231_45	PHROG	phrog_13506	NA	unknown function
UHGV-0140231_45	eggNOG-mapper	1104325.M7W_2069	NA	NA
UHGV-0140231_46	PHROG	phrog_11542	NA	unknown function
UHGV-0140231_46	eggNOG-mapper	768486.EHR_09455	NA	NA
UHGV-0140231_47	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0140231_47	UniRef90	UniRef90_A0A1V8Y9Q9	Antirepressor	NA
UHGV-0140231_47	eggNOG-mapper	1158604.I591_00383	ORF6C domain	NA
UHGV-0140231_47	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0140231_47	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0140231_47	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0140231_47	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0140231_50	PHROG	phrog_13092	NA	unknown function
UHGV-0140231_50	UniRef90	UniRef90_C9B4H9	Predicted protein	NA
UHGV-0140231_50	eggNOG-mapper	1158604.I591_00380	NA	NA
UHGV-0140231_51	PHROG	phrog_7989	NA	unknown function
UHGV-0140231_52	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0140231_52	UniRef90	UniRef90_A0A0V7Y6N7	HTH cro/C1-type domain-containing protein	NA
UHGV-0140231_52	eggNOG-mapper	1158610.UC3_02385	NA	NA
UHGV-0140231_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140231_52	Structural annotation	PF12844, NF041677, COG3655	NA	NA
UHGV-0140231_53	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0140231_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140231_53	UniRef90	UniRef90_A0A0V7Y741	Helix-turn-helix transcriptional regulator	NA
UHGV-0140231_53	eggNOG-mapper	1300150.EMQU_1760	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140231_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140231_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140231_53	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0140231_54	PHROG	phrog_87	metallo-protease	other
UHGV-0140231_54	UniRef90	UniRef90_A0A2C9XRI9	Peptidase_M78 domain-containing protein	NA
UHGV-0140231_54	eggNOG-mapper	768486.EHR_09785	IrrE N-terminal-like domain	NA
UHGV-0140231_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0140231_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0140231_54	Structural annotation	PF06114, COG2856	NA	NA