UHGV-0140242

Genome information

Genome length 31,814 bps

CDS count 47

Completeness 83.49% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140242
vOTU ID	vOTU-018717
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_393006
BioSample	SAMN04436833
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	85.64
Jumbo phage	No

Genome content
Genome length	31,814 bps
GC content	36.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.90%
Average CDS length	625.21 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140242_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0140242_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0140242_1	UniRef90	UniRef90_A0A7H4KVP8	LexA repressor	NA
UHGV-0140242_1	eggNOG-mapper	1139219.I569_01413	Peptidase S24-like	NA
UHGV-0140242_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140242_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0140242_1	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0140242_1	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0140242_2	UniRef90	UniRef90_V7ZP21	XRE family transcriptional regulator	NA
UHGV-0140242_2	eggNOG-mapper	1140001.I571_01122	NA	NA
UHGV-0140242_2	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0140242_3	PHROG	phrog_17173	NA	unknown function
UHGV-0140242_3	UniRef90	UniRef90_V7ZTD6	XRE family transcriptional regulator (Fragment)	NA
UHGV-0140242_4	PHROG	phrog_10973	NA	unknown function
UHGV-0140242_5	PHROG	phrog_7246	NA	unknown function
UHGV-0140242_6	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0140242_6	UniRef90	UniRef90_D2IYT0	Anti-repressor protein	NA
UHGV-0140242_6	eggNOG-mapper	673832.D2IYT0_9CAUD	DNA binding	NA
UHGV-0140242_6	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0140242_6	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0140242_6	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0140242_6	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0140242_7	PHROG	phrog_1655	NA	unknown function
UHGV-0140242_7	eggNOG-mapper	1300150.EMQU_2298	NA	NA
UHGV-0140242_8	PHROG	phrog_1270	NA	unknown function
UHGV-0140242_9	PHROG	phrog_21427	NA	unknown function
UHGV-0140242_10	PHROG	phrog_4384	NA	unknown function
UHGV-0140242_11	PHROG	phrog_5100	NA	unknown function
UHGV-0140242_12	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0140242_12	UniRef90	UniRef90_E6I945	Erf family protein	NA
UHGV-0140242_12	eggNOG-mapper	945021.TEH_18390	ERF superfamily	NA
UHGV-0140242_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0140242_12	Structural annotation	PF04404, TIGR00607, COG5468	NA	NA
UHGV-0140242_13	PHROG	phrog_674	NA	unknown function
UHGV-0140242_13	UniRef90	UniRef90_A0A7Z8SRV7	NA	NA
UHGV-0140242_13	eggNOG-mapper	663241.C9E2N0_9CAUD	NA	NA
UHGV-0140242_13	Pfam	PF07083	NA	DUF1351
UHGV-0140242_13	Structural annotation	PF07083	NA	NA
UHGV-0140242_14	PHROG	phrog_398	NA	unknown function
UHGV-0140242_14	UniRef90	UniRef90_UPI000330E66A	putative HNHc nuclease	NA
UHGV-0140242_14	eggNOG-mapper	663241.C9E2N1_9CAUD	Pfam:HNHc_6	NA
UHGV-0140242_14	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0140242_14	Structural annotation	PF16784	NA	NA
UHGV-0140242_15	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0140242_15	UniRef90	UniRef90_E0HGB1	Phage replisome organizer N-terminal domain protein	NA
UHGV-0140242_15	eggNOG-mapper	663241.C9E2N2_9CAUD	calcium ion binding	NA
UHGV-0140242_15	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0140242_15	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0140242_15	Structural annotation	PF09681, TIGR01714, COG1321	NA	NA
UHGV-0140242_16	PHROG	phrog_10188	NA	unknown function
UHGV-0140242_16	eggNOG-mapper	1140001.I571_02092	NA	NA
UHGV-0140242_17	PHROG	phrog_5677	NA	unknown function
UHGV-0140242_18	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0140242_18	UniRef90	UniRef90_D2IZ07	DNA cytosine methyltransferase	NA
UHGV-0140242_18	eggNOG-mapper	673832.D2IYU6_9CAUD	methyltransferase activity	NA
UHGV-0140242_18	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0140242_18	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0140242_18	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0140242_19	PHROG	phrog_6270	NA	unknown function
UHGV-0140242_19	UniRef90	UniRef90_D2IYU7	PcfU	NA
UHGV-0140242_20	PHROG	phrog_98	NA	unknown function
UHGV-0140242_20	UniRef90	UniRef90_C9E2N7	YopX domain-containing protein	NA
UHGV-0140242_20	eggNOG-mapper	663241.C9E2N7_9CAUD	YopX protein	NA
UHGV-0140242_20	Pfam	PF09643	YopX protein	YopX
UHGV-0140242_20	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0140242_20	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0140242_21	PHROG	phrog_1773	6-phosphofructokinase	other
UHGV-0140242_21	UniRef90	UniRef90_A0A097BY78	6-phosphofructokinase	NA
UHGV-0140242_22	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140242_22	UniRef90	UniRef90_C9E2N9	Asch domain protein	NA
UHGV-0140242_22	eggNOG-mapper	663241.C9E2N9_9CAUD	NA	NA
UHGV-0140242_22	Pfam	PF12961	NA	DUF3850
UHGV-0140242_22	Structural annotation	PF12961, NF003443, COG4043	NA	NA
UHGV-0140242_23	PHROG	phrog_2776	NA	unknown function
UHGV-0140242_23	UniRef90	UniRef90_K8E4E2	Lin2596 protein	NA
UHGV-0140242_23	eggNOG-mapper	663241.C9E2P0_9CAUD	NA	NA
UHGV-0140242_23	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0140242_24	PHROG	phrog_6559	NA	unknown function
UHGV-0140242_25	PHROG	phrog_1335	NA	unknown function
UHGV-0140242_26	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0140242_26	UniRef90	UniRef90_D2IZS6	Transcriptional regulator	NA
UHGV-0140242_26	eggNOG-mapper	1201292.DR75_1521	ArpU family	NA
UHGV-0140242_26	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0140242_26	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0140242_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0140242_27	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0140242_27	UniRef90	UniRef90_V7ZMV0	Terminase	NA
UHGV-0140242_27	eggNOG-mapper	665959.HMPREF1013_05324	phage terminase small subunit	NA
UHGV-0140242_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0140242_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0140242_27	Structural annotation	PF06056, NF040785, COG5484	NA	NA
UHGV-0140242_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140242_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0140242_28	UniRef90	UniRef90_V7ZP56	Terminase	NA
UHGV-0140242_28	eggNOG-mapper	1234679.BN424_2627	Phage terminase, large subunit	NA
UHGV-0140242_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0140242_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0140242_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0140242_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140242_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0140242_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0140242_29	UniRef90	UniRef90_V7ZN55	Capsid protein	NA
UHGV-0140242_29	eggNOG-mapper	768486.EHR_02635	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0140242_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0140242_29	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0140242_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0140242_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0140242_30	UniRef90	UniRef90_A0A7Z8WPA9	Capsid protein	NA
UHGV-0140242_30	eggNOG-mapper	1158601.I585_01158	Phage minor capsid protein 2	NA
UHGV-0140242_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0140242_30	COG	COG2369	NA	NA
UHGV-0140242_30	Structural annotation	PF06152	NA	NA
UHGV-0140242_31	PHROG	phrog_918	NA	unknown function
UHGV-0140242_31	UniRef90	UniRef90_UPI000FFEACEB	NA	NA
UHGV-0140242_31	eggNOG-mapper	272626.lin0103	NA	NA
UHGV-0140242_31	Pfam	PF19791	NA	DUF6275
UHGV-0140242_31	Structural annotation	PF19791	NA	NA
UHGV-0140242_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140242_32	UniRef90	UniRef90_V7ZRB5	Capsid protein	NA
UHGV-0140242_32	eggNOG-mapper	768486.EHR_02625	Phage minor structural protein GP20	NA
UHGV-0140242_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0140242_32	Structural annotation	PF06810	NA	NA
UHGV-0140242_33	PHROG	phrog_422	major head protein	head and packaging
UHGV-0140242_33	UniRef90	UniRef90_V7ZS76	Capsid protein	NA
UHGV-0140242_33	eggNOG-mapper	1158601.I585_01156	NA	NA
UHGV-0140242_33	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0140242_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0140242_34	UniRef90	UniRef90_I6SVS1	Protein gp8	NA
UHGV-0140242_34	eggNOG-mapper	1234679.BN424_2621	NA	NA
UHGV-0140242_35	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0140242_35	UniRef90	UniRef90_A0A4S2CEY0	Minor capsid protein	NA
UHGV-0140242_35	eggNOG-mapper	768486.EHR_02605	Minor capsid protein	NA
UHGV-0140242_35	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0140242_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0140242_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0140242_36	UniRef90	UniRef90_V7ZQV6	Capsid protein	NA
UHGV-0140242_36	eggNOG-mapper	1158601.I585_01153	Minor capsid protein	NA
UHGV-0140242_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0140242_36	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0140242_37	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0140242_37	UniRef90	UniRef90_V7ZRB1	Capsid protein	NA
UHGV-0140242_37	eggNOG-mapper	1158601.I585_01152	Minor capsid protein from bacteriophage	NA
UHGV-0140242_37	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0140242_37	Structural annotation	PF12691	NA	NA
UHGV-0140242_38	PHROG	phrog_820	major tail protein	tail
UHGV-0140242_38	UniRef90	UniRef90_A0A8I1FBJ6	Phage tail protein	NA
UHGV-0140242_38	eggNOG-mapper	1158601.I585_01151	NA	NA
UHGV-0140242_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0140242_39	PHROG	phrog_341	major tail protein	tail
UHGV-0140242_39	UniRef90	UniRef90_UPI000A191C1D	phage tail protein	NA
UHGV-0140242_39	eggNOG-mapper	1486428.A0A097BY60_9CAUD	peptidase activity	NA
UHGV-0140242_39	Structural annotation	PF02368, MF_04116, TIGR04225, COG5492	NA	NA
UHGV-0140242_40	PHROG	phrog_1061	NA	unknown function
UHGV-0140242_40	UniRef90	UniRef90_A0A380KJJ3	NA	NA
UHGV-0140242_40	eggNOG-mapper	1158601.I585_01150	NA	NA
UHGV-0140242_40	Structural annotation	PF10666	NA	NA
UHGV-0140242_41	PHROG	phrog_706	NA	unknown function
UHGV-0140242_41	UniRef90	UniRef90_A0A828QPX0	Bacteriophage Gp15 protein	NA
UHGV-0140242_41	eggNOG-mapper	1158601.I585_01149	Bacteriophage Gp15 protein	NA
UHGV-0140242_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0140242_41	Structural annotation	PF06854	NA	NA
UHGV-0140242_42	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0140242_42	UniRef90	UniRef90_A0A7Z8WRF8	Phage tail tape measure protein	NA
UHGV-0140242_42	eggNOG-mapper	1140003.I573_01294	phage tail tape measure protein	NA
UHGV-0140242_42	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0140242_42	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0140242_42	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0140242_42	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0140242_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0140242_43	UniRef90	UniRef90_V7ZMX6	Phage tail protein	NA
UHGV-0140242_43	eggNOG-mapper	1158601.I585_01147	phage tail	NA
UHGV-0140242_43	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0140242_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0140242_43	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0140242_44	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0140242_44	UniRef90	UniRef90_UPI0010F85B65	phage tail protein	NA
UHGV-0140242_44	eggNOG-mapper	1158601.I585_01146	Prophage endopeptidase tail	NA
UHGV-0140242_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0140242_44	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0140242_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0140242_44	COG	COG4926	Phage-related protein	NA
UHGV-0140242_45	PHROG	phrog_1665	NA	unknown function
UHGV-0140242_45	UniRef90	UniRef90_UPI001371D1DB	BppU family phage baseplate upper protein	NA
UHGV-0140242_45	eggNOG-mapper	673832.D2IYX9_9CAUD	NA	NA
UHGV-0140242_45	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0140242_46	PHROG	phrog_199	holin	lysis
UHGV-0140242_46	UniRef90	UniRef90_A0A097BY69	Holin	NA
UHGV-0140242_46	eggNOG-mapper	1486428.A0A097BY69_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0140242_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0140242_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0140242_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0140242_47	PHROG	phrog_670	endolysin	lysis
UHGV-0140242_47	UniRef90	UniRef90_A0A097BY70	Lysin	NA
UHGV-0140242_47	eggNOG-mapper	1486428.A0A097BY70_9CAUD	peptidoglycan catabolic process	NA
UHGV-0140242_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0140242_47	Structural annotation	PF01510, MF_04111, COG5632	NA	NA