UHGV-0140303

Genome information

Genome length 18,482 bps

CDS count 29

Completeness 92.19% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140303
vOTU ID	vOTU-071693
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_384518
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34
Jumbo phage	No

Genome content
Genome length	18,482 bps
GC content	49.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	93.77%
Average CDS length	602.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140303_2	PHROG	phrog_14030	NA	unknown function
UHGV-0140303_2	UniRef90	UniRef90_UPI00156DF79C	NlpC/P60 family protein	NA
UHGV-0140303_2	eggNOG-mapper	706433.HMPREF9430_01868	NLP P60 protein	NA
UHGV-0140303_2	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0140303_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0140303_2	Structural annotation	PF05382, NF040678, COG0791	NA	NA
UHGV-0140303_3	PHROG	phrog_2150	terminase	head and packaging
UHGV-0140303_3	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0140303_3	eggNOG-mapper	1162304.I3PV13_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0140303_3	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0140303_3	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0140303_4	PHROG	phrog_199	holin	lysis
UHGV-0140303_4	UniRef90	UniRef90_UPI001C595E0D	phage holin family protein	NA
UHGV-0140303_4	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0140303_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0140303_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0140303_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0140303_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0140303_5	PHROG	phrog_291	endolysin	lysis
UHGV-0140303_5	UniRef90	UniRef90_J9FII9	Glycoside hydrolase, family 25 (Fragment)	NA
UHGV-0140303_5	eggNOG-mapper	1437608.BBIA_1423	Glycosyl hydrolases family 25	NA
UHGV-0140303_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0140303_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0140303_5	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0140303_8	Structural annotation	PF08931	NA	NA
UHGV-0140303_9	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0140303_9	UniRef90	UniRef90_A6XAD8	Lower collar	NA
UHGV-0140303_9	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0140303_12	PHROG	phrog_2038	upper collar connector	connector
UHGV-0140303_12	UniRef90	UniRef90_A0A1X9SGN4	Upper collar protein	NA
UHGV-0140303_12	eggNOG-mapper	1309583.M4W5Z5_9CAUD	Phage Connector (GP10)	NA
UHGV-0140303_12	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0140303_13	PHROG	phrog_2248	tail protein	tail
UHGV-0140303_13	UniRef90	UniRef90_A0A843GL83	Caud_tail_N domain-containing protein	NA
UHGV-0140303_13	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0140303_13	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0140303_13	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0140303_13	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0140303_14	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0140303_14	UniRef90	UniRef90_J9H241	Major head protein	NA
UHGV-0140303_14	eggNOG-mapper	573061.Clocel_3246	Bacterial Ig-like domain (group 2)	NA
UHGV-0140303_14	COG	COG2382	Enterochelin esterase or related enzyme	NA
UHGV-0140303_14	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0140303_16	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0140303_16	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0140303_16	UniRef90	UniRef90_A0A2V2GAI8	DNA polymerase	NA
UHGV-0140303_16	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0140303_16	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0140303_16	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0140303_17	Structural annotation	PF05435	NA	NA
UHGV-0140303_18	Pfam	PF05464	Phi-29-like late genes activator (early protein GP4)	Phi-29_GP4
UHGV-0140303_18	Structural annotation	PF05464	NA	NA
UHGV-0140303_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0140303_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140303_20	UniRef90	UniRef90_A0A437USM9	Single-stranded DNA-binding protein	NA
UHGV-0140303_20	eggNOG-mapper	445975.COLSTE_01126	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0140303_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140303_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0140303_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0140303_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0140303_20	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0140303_21	Structural annotation	PF17548	NA	NA