UHGV-0140321

Genome information

Genome length 39,030 bps

CDS count 53

Completeness 90.48% (high-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140321
vOTU ID	vOTU-074171
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_356320
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.48% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.31
Jumbo phage	No

Genome content
Genome length	39,030 bps
GC content	38.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.59%
Average CDS length	675.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140321_1	KOfam	K14059	int; integrase	NA
UHGV-0140321_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0140321_1	UniRef90	UniRef90_A0A415UCT2	Integrase	NA
UHGV-0140321_1	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0140321_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140321_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140321_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0140321_2	Structural annotation	PF12869, PF01336, NF012035, COG4085	NA	NA
UHGV-0140321_3	UniRef90	UniRef90_UPI00129D7E5C	EbhA	NA
UHGV-0140321_3	eggNOG-mapper	1121865.OMW_00786	NA	NA
UHGV-0140321_3	Structural annotation	PF20650	NA	NA
UHGV-0140321_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0140321_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0140321_5	UniRef90	UniRef90_A0A415UCN7	XRE family transcriptional regulator	NA
UHGV-0140321_5	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0140321_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0140321_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140321_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140321_5	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0140321_7	UniRef90	UniRef90_UPI001D0976C2	actin family protein	NA
UHGV-0140321_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140321_8	UniRef90	UniRef90_A0A415UCP1	XRE family transcriptional regulator	NA
UHGV-0140321_8	eggNOG-mapper	1449343.JQLQ01000002_gene686	NA	NA
UHGV-0140321_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140321_8	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0140321_9	Structural annotation	PF10922	NA	NA
UHGV-0140321_10	PHROG	phrog_3777	NA	unknown function
UHGV-0140321_10	UniRef90	UniRef90_UPI001ADD9B3A	NA	NA
UHGV-0140321_10	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0140321_10	Structural annotation	PF12957	NA	NA
UHGV-0140321_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140321_11	UniRef90	UniRef90_A0A415UCZ1	Endonuclease	NA
UHGV-0140321_11	eggNOG-mapper	1235799.C818_02268	YqaJ-like viral recombinase domain	NA
UHGV-0140321_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0140321_11	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0140321_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0140321_11	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0140321_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0140321_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0140321_12	UniRef90	UniRef90_A0A415UCR6	Recombinase RecT	NA
UHGV-0140321_12	eggNOG-mapper	658088.HMPREF0987_00529	RecT family	NA
UHGV-0140321_12	Pfam	PF03837	RecT family	RecT
UHGV-0140321_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0140321_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0140321_12	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0140321_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0140321_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0140321_13	UniRef90	UniRef90_A0A415UCR1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0140321_13	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0140321_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0140321_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0140321_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0140321_14	PHROG	phrog_15768	NA	unknown function
UHGV-0140321_14	UniRef90	UniRef90_A0A415ZXW9	NA	NA
UHGV-0140321_14	eggNOG-mapper	742740.HMPREF9474_03492	DnaD domain protein	NA
UHGV-0140321_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0140321_14	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0140321_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0140321_16	PHROG	phrog_26861	NA	unknown function
UHGV-0140321_16	UniRef90	UniRef90_A0A2V2D5V3	Single-stranded DNA-binding protein	NA
UHGV-0140321_16	eggNOG-mapper	411469.EUBHAL_02815	NA	NA
UHGV-0140321_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140321_16	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0140321_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0140321_16	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0140321_18	UniRef90	UniRef90_A0A2V2D5M3	NA	NA
UHGV-0140321_18	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-0140321_18	Pfam	PF04448	NA	DUF551
UHGV-0140321_22	PHROG	phrog_1455	NA	unknown function
UHGV-0140321_22	eggNOG-mapper	445335.CBN_3005	NA	NA
UHGV-0140321_22	Pfam	PF21793	NA	DUF6877
UHGV-0140321_22	Structural annotation	PF21793	NA	NA
UHGV-0140321_23	PHROG	phrog_6568	NA	unknown function
UHGV-0140321_23	eggNOG-mapper	742740.HMPREF9474_02283	NA	NA
UHGV-0140321_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0140321_24	UniRef90	UniRef90_UPI001F372FD7	sigma-70 region 4 domain-containing protein	NA
UHGV-0140321_24	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-0140321_24	Structural annotation	PF02996	NA	NA
UHGV-0140321_25	eggNOG-mapper	1173020.Cha6605_5303	NA	NA
UHGV-0140321_25	Structural annotation	PF20505, NF001461	NA	NA
UHGV-0140321_26	Structural annotation	PF11026	NA	NA
UHGV-0140321_27	PHROG	phrog_8680	NA	unknown function
UHGV-0140321_27	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0140321_27	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0140321_27	Pfam	PF14386	NA	DUF4417
UHGV-0140321_27	Structural annotation	PF14386	NA	NA
UHGV-0140321_28	Structural annotation	PF06167, NF041907	NA	NA
UHGV-0140321_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0140321_29	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0140321_29	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0140321_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0140321_29	Structural annotation	PF16677	NA	NA
UHGV-0140321_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140321_30	PHROG	phrog_10250	NA	unknown function
UHGV-0140321_30	UniRef90	UniRef90_A0A415UCP7	PBSX family phage terminase large subunit	NA
UHGV-0140321_30	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0140321_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0140321_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0140321_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140321_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0140321_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0140321_31	UniRef90	UniRef90_A0A415G5I2	Phage capsid protein	NA
UHGV-0140321_31	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0140321_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0140321_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0140321_32	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0140321_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0140321_32	UniRef90	UniRef90_A0A415UCR3	Phage capsid protein	NA
UHGV-0140321_32	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0140321_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0140321_32	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0140321_32	COG	COG2369	NA	NA
UHGV-0140321_32	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0140321_34	PHROG	phrog_24129	NA	unknown function
UHGV-0140321_34	UniRef90	UniRef90_W6NHA7	Antirepressor [Bacteriophage A118]	NA
UHGV-0140321_34	eggNOG-mapper	1298920.KI911353_gene2074	BRO family, N-terminal domain	NA
UHGV-0140321_34	COG	COG3617	Prophage antirepressor	NA
UHGV-0140321_35	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0140321_35	UniRef90	UniRef90_A0A415G5D8	Bro-N domain-containing protein	NA
UHGV-0140321_35	eggNOG-mapper	1151292.QEW_2476	BRO family, N-terminal domain	NA
UHGV-0140321_35	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0140321_35	COG	COG3617	Prophage antirepressor	NA
UHGV-0140321_36	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0140321_36	UniRef90	UniRef90_A0A415UCX1	NA	NA
UHGV-0140321_36	eggNOG-mapper	411461.DORFOR_01165	NA	NA
UHGV-0140321_36	Structural annotation	PF14359	NA	NA
UHGV-0140321_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140321_37	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-0140321_37	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0140321_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0140321_37	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0140321_38	PHROG	phrog_247	major head protein	head and packaging
UHGV-0140321_38	UniRef90	UniRef90_A0A415UCN2	Phage coat protein	NA
UHGV-0140321_38	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0140321_38	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0140321_38	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0140321_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0140321_39	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0140321_39	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0140321_40	PHROG	phrog_3366	NA	unknown function
UHGV-0140321_40	eggNOG-mapper	411490.ANACAC_00775	NA	NA
UHGV-0140321_40	Pfam	PF20536	NA	DUF6751
UHGV-0140321_40	Structural annotation	PF20536	NA	NA
UHGV-0140321_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0140321_41	UniRef90	UniRef90_A0A415UCL3	Capsid protein	NA
UHGV-0140321_41	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0140321_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0140321_41	Structural annotation	PF11114	NA	NA
UHGV-0140321_42	PHROG	phrog_3266	tail completion	connector
UHGV-0140321_42	UniRef90	UniRef90_A0A415UCP6	Chloramphenicol resistance protein	NA
UHGV-0140321_42	eggNOG-mapper	411490.ANACAC_00773	NA	NA
UHGV-0140321_42	Structural annotation	PF12691	NA	NA
UHGV-0140321_43	PHROG	phrog_3099	NA	unknown function
UHGV-0140321_43	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0140321_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0140321_44	PHROG	phrog_4450	NA	unknown function
UHGV-0140321_44	eggNOG-mapper	411490.ANACAC_00770	NA	NA
UHGV-0140321_44	Structural annotation	PF20378	NA	NA
UHGV-0140321_45	PHROG	phrog_706	NA	unknown function
UHGV-0140321_45	UniRef90	UniRef90_B0MAY5	Bacteriophage Gp15 protein	NA
UHGV-0140321_45	eggNOG-mapper	411490.ANACAC_00711	Bacteriophage Gp15 protein	NA
UHGV-0140321_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0140321_45	Structural annotation	PF06854	NA	NA
UHGV-0140321_46	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0140321_46	PHROG	phrog_19074	NA	unknown function
UHGV-0140321_46	UniRef90	UniRef90_A0A415UCW1	Phage tail tape measure protein	NA
UHGV-0140321_46	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0140321_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0140321_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0140321_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0140321_46	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0140321_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0140321_47	UniRef90	UniRef90_A0A415UCK7	MtfA protein	NA
UHGV-0140321_47	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0140321_47	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0140321_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0140321_47	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0140321_48	PHROG	phrog_3558	tail protein	tail
UHGV-0140321_48	UniRef90	UniRef90_A0A415UCM3	Prophage_tail domain-containing protein	NA
UHGV-0140321_48	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0140321_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0140321_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0140321_48	COG	COG4926	Phage-related protein	NA
UHGV-0140321_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0140321_49	PHROG	phrog_36886	NA	unknown function
UHGV-0140321_49	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0140321_49	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0140321_50	PHROG	phrog_5717	tail protein	tail
UHGV-0140321_50	UniRef90	UniRef90_A0A4U8Q6R4	Baseplate wedge subunit and tail pin	NA
UHGV-0140321_50	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0140321_50	COG	COG4675	Phage tail collar domain	NA
UHGV-0140321_50	Structural annotation	COG4675	NA	NA
UHGV-0140321_51	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0140321_52	PHROG	phrog_19695	NA	unknown function
UHGV-0140321_52	eggNOG-mapper	476272.RUMHYD_01995	NA	NA
UHGV-0140321_53	Structural annotation	PF03412, NF033920, COG4990	NA	NA