UHGV-0140334

Genome information

Genome length 46,208 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140334
vOTU ID	vOTU-046035
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_382499
BioSample	SAMN04209239
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.9
Jumbo phage	No

Genome content
Genome length	46,208 bps
GC content	32.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	85.67%
Average CDS length	560.58 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140334_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0140334_1	PHROG	phrog_7698	endolysin	lysis
UHGV-0140334_1	UniRef90	UniRef90_UPI001D0AA402	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0140334_1	eggNOG-mapper	1125712.HMPREF1316_2631	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0140334_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0140334_1	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0140334_1	Structural annotation	COG5632	NA	NA
UHGV-0140334_3	PHROG	phrog_443	holin	lysis
UHGV-0140334_3	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0140334_3	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0140334_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0140334_3	Structural annotation	PF16945	NA	NA
UHGV-0140334_5	PHROG	phrog_20016	NA	unknown function
UHGV-0140334_5	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-0140334_5	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0140334_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0140334_6	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0140334_6	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0140334_11	UniRef90	UniRef90_UPI001D0A24DA	SGNH/GDSL hydrolase family protein	NA
UHGV-0140334_11	eggNOG-mapper	1122931.AUAE01000019_gene984	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0140334_12	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-0140334_13	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0140334_14	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0140334_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0140334_15	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0140334_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0140334_15	COG	COG4926	Phage-related protein	NA
UHGV-0140334_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0140334_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0140334_16	UniRef90	UniRef90_UPI001124B7B2	phage tail family protein	NA
UHGV-0140334_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0140334_16	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0140334_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0140334_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0140334_17	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0140334_17	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0140334_17	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-0140334_17	eggNOG-mapper	999425.HMPREF9186_02045	Phage-related minor tail protein	NA
UHGV-0140334_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0140334_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0140334_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0140334_17	Structural annotation	PF10145, TIGR01760, TIGR01843, COG5280	NA	NA
UHGV-0140334_18	PHROG	phrog_709	NA	unknown function
UHGV-0140334_18	Structural annotation	PF11836	NA	NA
UHGV-0140334_19	PHROG	phrog_88	major tail protein	tail
UHGV-0140334_19	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0140334_19	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0140334_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0140334_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0140334_20	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0140334_20	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0140334_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0140334_20	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0140334_21	eggNOG-mapper	1145276.T479_19945	NA	NA
UHGV-0140334_21	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0140334_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0140334_22	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0140334_22	eggNOG-mapper	588581.Cpap_1270	NA	NA
UHGV-0140334_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0140334_23	PHROG	phrog_5223	neck protein	connector
UHGV-0140334_23	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0140334_23	Structural annotation	TIGR01560	NA	NA
UHGV-0140334_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0140334_24	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0140334_24	eggNOG-mapper	1157490.EL26_20710	Phage capsid family	NA
UHGV-0140334_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0140334_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0140334_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0140334_24	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0140334_25	KOfam	K06904	NA	NA
UHGV-0140334_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0140334_25	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0140334_25	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0140334_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0140334_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0140334_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0140334_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0140334_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0140334_26	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0140334_26	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0140334_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0140334_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0140334_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0140334_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0140334_27	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0140334_27	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0140334_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0140334_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0140334_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0140334_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0140334_28	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0140334_28	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0140334_28	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0140334_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0140334_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0140334_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0140334_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140334_29	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0140334_29	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0140334_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0140334_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0140334_30	UniRef90	UniRef90_A0A374RVC6	XRE family transcriptional regulator	NA
UHGV-0140334_30	eggNOG-mapper	1145276.T479_12115	Helix-turn-helix domain	NA
UHGV-0140334_30	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0140334_31	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0140334_31	UniRef90	UniRef90_A0A395WEU5	Antirestriction protein ArdA	NA
UHGV-0140334_31	eggNOG-mapper	411467.BACCAP_02490	NA	NA
UHGV-0140334_31	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0140334_31	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0140334_31	COG	COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	NA
UHGV-0140334_31	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0140334_35	eggNOG-mapper	1403948.Q618_VCMC00003G0140	NA	NA
UHGV-0140334_40	Structural annotation	PF10879	NA	NA
UHGV-0140334_41	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-0140334_41	Pfam	PF07374	NA	DUF1492
UHGV-0140334_41	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0140334_44	Structural annotation	PF11061	NA	NA
UHGV-0140334_46	PHROG	phrog_7711	NA	unknown function
UHGV-0140334_46	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0140334_46	eggNOG-mapper	886882.PPSC2_p0287	NA	NA
UHGV-0140334_46	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0140334_48	PHROG	phrog_918	NA	unknown function
UHGV-0140334_48	UniRef90	UniRef90_UPI001D0B68F4	NA	NA
UHGV-0140334_48	eggNOG-mapper	411473.RUMCAL_00361	NA	NA
UHGV-0140334_48	Pfam	PF19791	NA	DUF6275
UHGV-0140334_48	Structural annotation	PF19791	NA	NA
UHGV-0140334_49	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0140334_49	UniRef90	UniRef90_UPI001D0A0924	dUTP diphosphatase	NA
UHGV-0140334_49	eggNOG-mapper	218284.CCDN010000001_gene545	dUTPase	NA
UHGV-0140334_49	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0140334_49	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0140334_49	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0140334_50	UniRef90	UniRef90_A0A843GVY1	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0140334_50	eggNOG-mapper	1410650.JHWL01000037_gene595	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0140334_50	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0140334_51	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0140334_51	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0140334_51	UniRef90	UniRef90_A0A3E3DZX6	PAPS_reduct domain-containing protein	NA
UHGV-0140334_51	eggNOG-mapper	1410650.JHWL01000037_gene595	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0140334_51	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0140334_51	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0140334_52	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0140334_55	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0140334_55	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0140334_55	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-0140334_55	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0140334_55	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0140334_55	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0140334_55	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0140334_56	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0140334_56	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-0140334_56	eggNOG-mapper	279808.SH2379	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0140334_56	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0140334_56	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0140334_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0140334_56	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0140334_58	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0140334_59	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0140334_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0140334_59	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-0140334_59	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0140334_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140334_59	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0140334_59	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0140334_62	UniRef90	UniRef90_UPI001D14AAA4	NA	NA
UHGV-0140334_65	UniRef90	UniRef90_UPI000E4DF961	ribbon-helix-helix domain-containing protein	NA
UHGV-0140334_65	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0140334_65	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0140334_67	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140334_67	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0140334_67	UniRef90	UniRef90_A0A395WA05	XRE family transcriptional regulator	NA
UHGV-0140334_67	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140334_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140334_67	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140334_67	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0140334_69	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0140334_69	UniRef90	UniRef90_A0A413UEK4	NA	NA
UHGV-0140334_69	eggNOG-mapper	936573.HMPREF1147_0268	NA	NA
UHGV-0140334_69	Pfam	PF10097	NA	DUF2335
UHGV-0140334_69	COG	COG5346	NA	NA
UHGV-0140334_69	Structural annotation	PF10097, COG5346	NA	NA
UHGV-0140334_71	KOfam	K14059	int; integrase	NA
UHGV-0140334_71	PHROG	phrog_1	integrase	integration and excision
UHGV-0140334_71	UniRef90	UniRef90_A0A395WBW7	Site-specific integrase	NA
UHGV-0140334_71	eggNOG-mapper	1235796.C815_00955	DNA integration	NA
UHGV-0140334_71	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140334_71	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140334_71	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA