UHGV-0140340

Genome information

Genome length 29,655 bps

CDS count 47

Completeness 77.88% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140340
vOTU ID	vOTU-022924
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_382473
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.95
Jumbo phage	No

Genome content
Genome length	29,655 bps
GC content	43.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	89.89%
Average CDS length	572.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140340_1	KOfam	K14059	int; integrase	NA
UHGV-0140340_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0140340_1	UniRef90	UniRef90_A0A3E3JY51	Site-specific integrase	NA
UHGV-0140340_1	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0140340_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140340_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140340_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0140340_2	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0140340_2	UniRef90	UniRef90_R5C1M0	KilA-N domain-containing protein	NA
UHGV-0140340_2	eggNOG-mapper	476272.RUMHYD_02819	COG NOG08824 non supervised orthologous group	NA
UHGV-0140340_2	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0140340_2	Structural annotation	PF04383, NF033622, COG3943	NA	NA
UHGV-0140340_3	PHROG	phrog_5610	NA	unknown function
UHGV-0140340_3	UniRef90	UniRef90_UPI001958800F	NA	NA
UHGV-0140340_3	eggNOG-mapper	1220589.CD32_21330	NA	NA
UHGV-0140340_3	Pfam	PF16729	NA	DUF5067
UHGV-0140340_3	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0140340_3	Structural annotation	PF16729, MF_00791, NF003967, COG2967	NA	NA
UHGV-0140340_4	PHROG	phrog_20886	NA	unknown function
UHGV-0140340_4	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0140340_4	Structural annotation	PF06114	NA	NA
UHGV-0140340_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140340_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140340_5	UniRef90	UniRef90_A0A4Q5C5Y2	XRE family transcriptional regulator	NA
UHGV-0140340_5	eggNOG-mapper	476272.RUMHYD_02826	TRANSCRIPTIONal	NA
UHGV-0140340_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140340_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0140340_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0140340_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140340_6	UniRef90	UniRef90_A0A4Q5C3E1	XRE family transcriptional regulator	NA
UHGV-0140340_6	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0140340_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140340_6	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0140340_9	UniRef90	UniRef90_A0A3E3JY61	XRE family transcriptional regulator	NA
UHGV-0140340_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140340_9	Structural annotation	PF13560, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0140340_10	Structural annotation	PF18822	NA	NA
UHGV-0140340_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0140340_11	UniRef90	UniRef90_UPI0015EBC975	siphovirus Gp157 family protein	NA
UHGV-0140340_11	eggNOG-mapper	1232453.BAIF02000010_gene3334	Siphovirus Gp157	NA
UHGV-0140340_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0140340_11	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0140340_13	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0140340_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0140340_14	UniRef90	UniRef90_UPI0015EC7CDD	AAA family ATPase	NA
UHGV-0140340_14	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-0140340_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0140340_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0140340_15	PHROG	phrog_18107	NA	unknown function
UHGV-0140340_15	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0140340_15	Structural annotation	PF05037	NA	NA
UHGV-0140340_16	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0140340_16	PHROG	phrog_11992	NA	unknown function
UHGV-0140340_16	UniRef90	UniRef90_UPI0015ECD565	CHC2 zinc finger domain-containing protein	NA
UHGV-0140340_16	eggNOG-mapper	1232453.BAIF02000010_gene3339	DNA primase activity	NA
UHGV-0140340_16	PADLOC	drt-UG29	DRT	DRT
UHGV-0140340_16	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0140340_16	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0140340_16	Structural annotation	PF01807	NA	NA
UHGV-0140340_17	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0140340_17	UniRef90	UniRef90_UPI001A9B8EFD	NA	NA
UHGV-0140340_17	eggNOG-mapper	1232453.BAIF02000010_gene3340	NA	NA
UHGV-0140340_17	Pfam	PF06048	NA	DUF927
UHGV-0140340_17	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0140340_17	COG	COG5519	NA	NA
UHGV-0140340_17	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0140340_18	KOfam	K03552	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	NA
UHGV-0140340_18	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0140340_18	UniRef90	UniRef90_UPI0015EBECE4	Holliday junction resolvase RecU	NA
UHGV-0140340_18	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-0140340_18	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0140340_18	Structural annotation	PF03838, MF_00130, NF002584, COG1591	NA	NA
UHGV-0140340_19	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0140340_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0140340_19	UniRef90	UniRef90_UPI0015EBF86F	DEAD/DEAH box helicase	NA
UHGV-0140340_19	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-0140340_19	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0140340_19	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0140340_19	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0140340_19	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0140340_19	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0140340_20	PHROG	phrog_23374	NA	unknown function
UHGV-0140340_21	eggNOG-mapper	658655.HMPREF0988_00867	NA	NA
UHGV-0140340_22	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0140340_22	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0140340_22	UniRef90	UniRef90_A0A3E3JY16	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0140340_22	eggNOG-mapper	1232452.BAIB02000007_gene1641	sigma factor activity	NA
UHGV-0140340_22	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0140340_22	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0140340_22	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0140340_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0140340_22	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-0140340_23	Structural annotation	PF00601	NA	NA
UHGV-0140340_26	PHROG	phrog_15198	NA	unknown function
UHGV-0140340_26	UniRef90	UniRef90_S2YMK7	NA	NA
UHGV-0140340_26	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0140340_26	Pfam	PF04448	NA	DUF551
UHGV-0140340_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0140340_28	UniRef90	UniRef90_A0A3E3JY24	RNA polymerase subunit sigma-70	NA
UHGV-0140340_28	eggNOG-mapper	1232452.BAIB02000007_gene1634	NA	NA
UHGV-0140340_28	Structural annotation	PF02996	NA	NA
UHGV-0140340_31	PHROG	phrog_2412	NA	unknown function
UHGV-0140340_31	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0140340_31	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0140340_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140340_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0140340_32	UniRef90	UniRef90_R6PMS4	Phage terminase large subunit PBSX family	NA
UHGV-0140340_32	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0140340_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0140340_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0140340_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140340_32	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0140340_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0140340_33	UniRef90	UniRef90_UPI001C8E2051	phage capsid protein	NA
UHGV-0140340_33	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0140340_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0140340_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0140340_34	UniRef90	UniRef90_UPI0009FA9B11	phage minor capsid protein	NA
UHGV-0140340_34	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0140340_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0140340_34	COG	COG2369	NA	NA
UHGV-0140340_34	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0140340_36	PHROG	phrog_918	NA	unknown function
UHGV-0140340_36	UniRef90	UniRef90_UPI001CF89D06	NA	NA
UHGV-0140340_36	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0140340_36	Pfam	PF19791	NA	DUF6275
UHGV-0140340_36	Structural annotation	PF19791	NA	NA
UHGV-0140340_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140340_37	UniRef90	UniRef90_UPI001C8E2BFB	phage scaffolding protein	NA
UHGV-0140340_37	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0140340_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0140340_37	Structural annotation	PF06810	NA	NA
UHGV-0140340_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-0140340_38	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0140340_38	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0140340_39	UniRef90	UniRef90_UPI001C8DA5AC	head fiber protein	NA
UHGV-0140340_39	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0140340_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0140340_40	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0140340_41	PHROG	phrog_3366	NA	unknown function
UHGV-0140340_41	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0140340_41	Pfam	PF20536	NA	DUF6751
UHGV-0140340_41	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0140340_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0140340_42	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0140340_42	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0140340_42	Structural annotation	PF11114	NA	NA
UHGV-0140340_43	PHROG	phrog_3266	tail completion	connector
UHGV-0140340_43	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0140340_43	Structural annotation	PF12691	NA	NA
UHGV-0140340_44	PHROG	phrog_3099	NA	unknown function
UHGV-0140340_44	eggNOG-mapper	1235792.C808_05373	NA	NA
UHGV-0140340_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0140340_45	PHROG	phrog_4450	NA	unknown function
UHGV-0140340_45	eggNOG-mapper	658655.HMPREF0988_02554	NA	NA
UHGV-0140340_45	Pfam	PF20378	NA	DUF6673
UHGV-0140340_45	Structural annotation	PF20378	NA	NA
UHGV-0140340_46	PHROG	phrog_706	NA	unknown function
UHGV-0140340_46	UniRef90	UniRef90_UPI00195660EF	Gp15 family bacteriophage protein	NA
UHGV-0140340_46	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0140340_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0140340_46	Structural annotation	PF06854	NA	NA
UHGV-0140340_47	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0140340_47	UniRef90	UniRef90_UPI00195EAA92	tape measure protein	NA
UHGV-0140340_47	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0140340_47	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0140340_47	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0140340_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0140340_47	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA