UHGV-0140343

Genome information

Genome length 29,331 bps

CDS count 51

Completeness 92.32% (high-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140343
vOTU ID	vOTU-059501
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_382467
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.73
Jumbo phage	No

Genome content
Genome length	29,331 bps
GC content	42.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.72%
Average CDS length	525.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140343_1	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0140343_2	PHROG	phrog_3639	minor tail protein	tail
UHGV-0140343_2	UniRef90	UniRef90_E7GTP7	BppU_N domain-containing protein	NA
UHGV-0140343_2	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0140343_2	Structural annotation	PF10651	NA	NA
UHGV-0140343_3	PHROG	phrog_12764	NA	unknown function
UHGV-0140343_3	Structural annotation	PF01176, MF_00085, TIGR00523, COG0361	NA	NA
UHGV-0140343_4	PHROG	phrog_26795	NA	unknown function
UHGV-0140343_4	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0140343_4	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0140343_5	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0140343_5	UniRef90	UniRef90_UPI00117786D0	DNRLRE domain-containing protein	NA
UHGV-0140343_5	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0140343_5	Structural annotation	PF06995, PF02010, MF_04116, TIGR02126, NF041431, COG3499, COG2372	NA	NA
UHGV-0140343_6	PHROG	phrog_33680	NA	unknown function
UHGV-0140343_6	UniRef90	UniRef90_A0A174XMM8	Tail tape measure protein TP901 core region	NA
UHGV-0140343_6	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0140343_6	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0140343_6	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0140343_9	PHROG	phrog_88	major tail protein	tail
UHGV-0140343_9	UniRef90	UniRef90_UPI001D1188C4	phage tail protein	NA
UHGV-0140343_9	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-0140343_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0140343_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0140343_10	Structural annotation	PF06141	NA	NA
UHGV-0140343_11	Structural annotation	TIGR01725	NA	NA
UHGV-0140343_12	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0140343_12	UniRef90	UniRef90_A0A2C5GPS3	Phage head-tail adapter protein	NA
UHGV-0140343_12	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0140343_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0140343_13	PHROG	phrog_5223	neck protein	connector
UHGV-0140343_13	UniRef90	UniRef90_UPI0011832E85	head-tail connector protein	NA
UHGV-0140343_13	eggNOG-mapper	742740.HMPREF9474_04303	NA	NA
UHGV-0140343_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0140343_13	Structural annotation	TIGR01560	NA	NA
UHGV-0140343_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0140343_14	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0140343_14	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0140343_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0140343_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0140343_14	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0140343_15	KOfam	K06904	NA	NA
UHGV-0140343_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0140343_15	UniRef90	UniRef90_E7GTR0	Caudovirus prohead protease	NA
UHGV-0140343_15	eggNOG-mapper	742740.HMPREF9474_04305	Phage prohead protease, HK97 family	NA
UHGV-0140343_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0140343_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0140343_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0140343_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0140343_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0140343_16	UniRef90	UniRef90_D1PNC9	Putative phage portal protein, HK97 family	NA
UHGV-0140343_16	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-0140343_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0140343_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0140343_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0140343_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0140343_17	UniRef90	UniRef90_UPI00073E3369	terminase large subunit	NA
UHGV-0140343_17	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0140343_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0140343_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0140343_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0140343_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0140343_18	PHROG	phrog_1066	NA	unknown function
UHGV-0140343_18	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0140343_18	eggNOG-mapper	742740.HMPREF9474_04308	NA	NA
UHGV-0140343_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0140343_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140343_19	UniRef90	UniRef90_UPI001899B9AE	HNH endonuclease	NA
UHGV-0140343_19	eggNOG-mapper	742740.HMPREF9474_04309	HNH endonuclease	NA
UHGV-0140343_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0140343_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0140343_20	UniRef90	UniRef90_A0A3R6NEA8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0140343_20	eggNOG-mapper	742740.HMPREF9474_04310	NA	NA
UHGV-0140343_20	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0140343_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0140343_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0140343_22	UniRef90	UniRef90_A0A6N3HKR6	Tyrosine recombinase XerC	NA
UHGV-0140343_22	eggNOG-mapper	742740.HMPREF9474_04312	Belongs to the 'phage' integrase family	NA
UHGV-0140343_22	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0140343_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140343_22	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0140343_22	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0140343_23	PHROG	phrog_24368	NA	unknown function
UHGV-0140343_23	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-0140343_25	PHROG	phrog_17260	NA	unknown function
UHGV-0140343_25	eggNOG-mapper	1114964.L485_22640	NA	NA
UHGV-0140343_25	AcrCatalog	cluster_11231	NA	NA
UHGV-0140343_27	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0140343_27	eggNOG-mapper	1235797.C816_01664	COG NOG12663 non supervised orthologous group	NA
UHGV-0140343_27	Structural annotation	PF00765, MF_02210, NF040502, COG3981	NA	NA
UHGV-0140343_28	PHROG	phrog_2776	NA	unknown function
UHGV-0140343_28	UniRef90	UniRef90_A0A5S4VR73	Helix-turn-helix domain-containing protein	NA
UHGV-0140343_28	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0140343_28	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0140343_30	PHROG	phrog_16397	NA	unknown function
UHGV-0140343_30	eggNOG-mapper	742740.HMPREF9474_04316	NA	NA
UHGV-0140343_32	AcrCatalog	cluster_222026	NA	NA
UHGV-0140343_33	Structural annotation	PF16467	NA	NA
UHGV-0140343_34	AcrCatalog	cluster_171373	NA	NA
UHGV-0140343_35	PHROG	phrog_7566	NA	unknown function
UHGV-0140343_35	eggNOG-mapper	742740.HMPREF9474_04319	NA	NA
UHGV-0140343_36	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0140343_36	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0140343_36	UniRef90	UniRef90_U2BBG5	Ribonuclease H domain protein	NA
UHGV-0140343_36	eggNOG-mapper	742740.HMPREF9474_04320	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0140343_36	Pfam	PF00075	RNase H	RNase_H
UHGV-0140343_36	COG	COG0328	Ribonuclease HI	NA
UHGV-0140343_36	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0140343_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0140343_39	eggNOG-mapper	742740.HMPREF9474_04323	NA	NA
UHGV-0140343_39	Structural annotation	PF11726	NA	NA
UHGV-0140343_40	UniRef90	UniRef90_W1I5S0	Uncultured bacterium plasmid pRGI00460	NA
UHGV-0140343_42	PHROG	phrog_14105	NA	unknown function
UHGV-0140343_42	UniRef90	UniRef90_U2BMS0	Pentapeptide repeat protein	NA
UHGV-0140343_42	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-0140343_42	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0140343_42	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0140343_48	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0140343_48	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0140343_48	UniRef90	UniRef90_U2BBK0	DNA-binding helix-turn-helix protein	NA
UHGV-0140343_48	eggNOG-mapper	1235798.C817_05486	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140343_48	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0140343_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140343_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0140343_50	UniRef90	UniRef90_UPI001D073EE1	OB-fold putative lipoprotein	NA
UHGV-0140343_50	eggNOG-mapper	742740.HMPREF9474_04329	NA	NA
UHGV-0140343_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0140343_51	PHROG	phrog_95	integrase	integration and excision
UHGV-0140343_51	UniRef90	UniRef90_U2BTD7	Resolvase protein	NA
UHGV-0140343_51	eggNOG-mapper	1304866.K413DRAFT_0761	Recombinase	NA
UHGV-0140343_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0140343_51	Pfam	PF07508	Recombinase	Recombinase
UHGV-0140343_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0140343_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0140343_51	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA