UHGV-0140354

Genome information

Genome length 34,291 bps

CDS count 63

Completeness 93.26% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140354
vOTU ID	vOTU-069052
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_392413
BioSample	SAMN04414078
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.25
Jumbo phage	No

Genome content
Genome length	34,291 bps
GC content	51.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.08%
Average CDS length	511.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140354_1	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0140354_1	eggNOG-mapper	755731.Clo1100_1151	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0140354_1	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0140354_1	Structural annotation	COG1694	NA	NA
UHGV-0140354_2	Pfam	PF20037	NA	DUF6440
UHGV-0140354_2	Structural annotation	PF20037	NA	NA
UHGV-0140354_3	Pfam	PF04448	NA	DUF551
UHGV-0140354_3	Structural annotation	NF037951	NA	NA
UHGV-0140354_8	Structural annotation	MF_00387, TIGR03992, COG2171	NA	NA
UHGV-0140354_11	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0140354_11	eggNOG-mapper	926561.KB900623_gene754	NA	NA
UHGV-0140354_14	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0140354_14	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0140354_14	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0140354_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0140354_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0140354_16	UniRef90	UniRef90_A0A1C6FK91	Replicative DNA helicase	NA
UHGV-0140354_16	eggNOG-mapper	1347392.CCEZ01000011_gene2447	Participates in initiation and elongation during chromosome replication	NA
UHGV-0140354_16	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0140354_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0140354_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0140354_16	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0140354_17	PHROG	phrog_16304	NA	unknown function
UHGV-0140354_17	UniRef90	UniRef90_A0A417HNC3	NA	NA
UHGV-0140354_17	eggNOG-mapper	1226322.HMPREF1545_00016	HNH endonuclease	NA
UHGV-0140354_17	Pfam	PF19808	NA	DUF6291
UHGV-0140354_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0140354_17	Structural annotation	PF19808	NA	NA
UHGV-0140354_18	COG	COG4443	NA	NA
UHGV-0140354_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0140354_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140354_19	UniRef90	UniRef90_A0A316PZZ8	Single-stranded DNA-binding protein	NA
UHGV-0140354_19	eggNOG-mapper	1042163.BRLA_c046430	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0140354_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140354_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0140354_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0140354_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0140354_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0140354_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0140354_20	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140354_20	UniRef90	UniRef90_A0A498CPV0	HNH endonuclease	NA
UHGV-0140354_20	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0140354_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0140354_21	PHROG	phrog_1389	NA	unknown function
UHGV-0140354_21	eggNOG-mapper	1280692.AUJL01000025_gene2094	NA	NA
UHGV-0140354_21	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0140354_22	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0140354_22	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-0140354_22	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0140354_22	Pfam	PF06378	NA	DUF1071
UHGV-0140354_22	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0140354_23	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0140354_23	UniRef90	UniRef90_UPI00189A2233	siphovirus Gp157 family protein	NA
UHGV-0140354_23	eggNOG-mapper	903814.ELI_1272	Siphovirus Gp157	NA
UHGV-0140354_23	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0140354_23	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0140354_27	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0140354_30	eggNOG-mapper	663952.SDD27957_09355	NA	NA
UHGV-0140354_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0140354_30	Structural annotation	PF21291, NF041951, COG3655	NA	NA
UHGV-0140354_31	KOfam	K14059	int; integrase	NA
UHGV-0140354_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0140354_31	UniRef90	UniRef90_UPI001928E55F	tyrosine-type recombinase/integrase	NA
UHGV-0140354_31	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0140354_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140354_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140354_33	eggNOG-mapper	397290.C810_01330	NA	NA
UHGV-0140354_34	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0140354_36	PHROG	phrog_21718	NA	unknown function
UHGV-0140354_38	PHROG	phrog_881	holin	lysis
UHGV-0140354_38	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0140354_38	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0140354_38	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0140354_38	Structural annotation	PF16938	NA	NA
UHGV-0140354_39	PHROG	phrog_1863	NA	unknown function
UHGV-0140354_39	UniRef90	UniRef90_A0A7X2Z1D1	t-SNARE coiled-coil homology domain-containing protein	NA
UHGV-0140354_39	eggNOG-mapper	1122918.KB907250_gene3599	NA	NA
UHGV-0140354_40	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-0140354_40	PHROG	phrog_329	minor tail protein	tail
UHGV-0140354_40	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0140354_40	eggNOG-mapper	755731.Clo1100_1179	cysteine-type peptidase activity	NA
UHGV-0140354_40	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0140354_40	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0140354_40	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0140354_40	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0140354_41	Structural annotation	PF12988	NA	NA
UHGV-0140354_42	PHROG	phrog_918	NA	unknown function
UHGV-0140354_42	UniRef90	UniRef90_Q5ULN6	Orf78	NA
UHGV-0140354_42	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0140354_42	Pfam	PF19791	NA	DUF6275
UHGV-0140354_42	Structural annotation	PF19791	NA	NA
UHGV-0140354_43	Structural annotation	PF14600, COG3979	NA	NA
UHGV-0140354_45	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0140354_45	Pfam	PF19789	NA	DUF6273
UHGV-0140354_45	Structural annotation	PF19789	NA	NA
UHGV-0140354_46	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0140354_46	PHROG	phrog_819	tail protein	tail
UHGV-0140354_46	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0140354_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0140354_46	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0140354_47	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0140354_48	PHROG	phrog_26795	NA	unknown function
UHGV-0140354_48	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0140354_48	eggNOG-mapper	642492.Clole_0754	NA	NA
UHGV-0140354_48	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0140354_49	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0140354_49	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0140354_49	Pfam	PF19789	NA	DUF6273
UHGV-0140354_49	Structural annotation	PF19077, PF06199, PF16794, PF08329, MF_04116, NF040520, COG3401, COG3499	NA	NA
UHGV-0140354_50	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0140354_50	UniRef90	UniRef90_A0A414AVE7	PhageMin_Tail domain-containing protein	NA
UHGV-0140354_50	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0140354_50	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0140354_50	COG	COG5283	Phage-related tail protein	NA
UHGV-0140354_50	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0140354_51	PHROG	phrog_2115	tail protein	tail
UHGV-0140354_51	Structural annotation	PF11836	NA	NA
UHGV-0140354_52	PHROG	phrog_88	major tail protein	tail
UHGV-0140354_52	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0140354_52	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0140354_52	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0140354_52	COG	COG5492	NA	NA
UHGV-0140354_52	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0140354_53	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0140354_53	Structural annotation	TIGR01725	NA	NA
UHGV-0140354_54	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0140354_54	Structural annotation	PF05657	NA	NA
UHGV-0140354_55	PHROG	phrog_25	head closure Hc1	connector
UHGV-0140354_55	UniRef90	UniRef90_UPI00164B7AD3	phage head closure protein	NA
UHGV-0140354_55	eggNOG-mapper	935948.KE386495_gene1331	Phage head-tail joining protein	NA
UHGV-0140354_55	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0140354_55	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0140354_55	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0140354_55	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0140354_56	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0140354_56	UniRef90	UniRef90_UPI00164A2E93	head-tail connector protein	NA
UHGV-0140354_56	eggNOG-mapper	1449126.JQKL01000051_gene3168	Phage gp6-like head-tail connector protein	NA
UHGV-0140354_56	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0140354_56	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0140354_56	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0140354_57	PHROG	phrog_10	major head protein	head and packaging
UHGV-0140354_57	UniRef90	UniRef90_UPI00164C0871	phage major capsid protein	NA
UHGV-0140354_57	eggNOG-mapper	1121324.CLIT_8c00760	phage major capsid protein, HK97 family	NA
UHGV-0140354_57	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0140354_57	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0140354_57	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0140354_57	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0140354_58	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0140354_58	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0140354_58	UniRef90	UniRef90_A0A1V5WAY6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0140354_58	eggNOG-mapper	748727.CLJU_c03550	Belongs to the peptidase S14 family	NA
UHGV-0140354_58	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0140354_58	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0140354_58	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0140354_59	PHROG	phrog_12	portal protein	head and packaging
UHGV-0140354_59	UniRef90	UniRef90_A0A1V5WBB3	Phage portal protein	NA
UHGV-0140354_59	eggNOG-mapper	1410624.JNKK01000017_gene1975	Phage portal protein	NA
UHGV-0140354_59	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0140354_59	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0140354_59	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0140354_59	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0140354_60	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0140354_60	UniRef90	UniRef90_UPI00164ABF0B	terminase large subunit	NA
UHGV-0140354_60	eggNOG-mapper	1122919.KB905559_gene1359	Terminase	NA
UHGV-0140354_60	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0140354_60	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0140354_60	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0140354_60	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0140354_61	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0140354_61	UniRef90	UniRef90_UPI0003615350	phage terminase small subunit P27 family	NA
UHGV-0140354_61	eggNOG-mapper	439292.Bsel_0787	Phage terminase small Subunit	NA
UHGV-0140354_61	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0140354_61	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0140354_61	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0140354_61	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0140354_62	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140354_62	UniRef90	UniRef90_A0A1M5WHB2	5-methylcytosine-specific restriction enzyme A	NA
UHGV-0140354_62	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0140354_63	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0140354_63	Structural annotation	PF05263, TIGR01636	NA	NA