UHGV-0140404

Genome information

Genome length 36,797 bps

CDS count 64

Completeness 94.46% (high-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140404
vOTU ID	vOTU-014832
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_354682
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.46% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.9
Jumbo phage	No

Genome content
Genome length	36,797 bps
GC content	41.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.52%
Average CDS length	531.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140404_10	PHROG	phrog_22529	NA	unknown function
UHGV-0140404_10	UniRef90	UniRef90_N9V9U6	3D domain-containing protein	NA
UHGV-0140404_10	eggNOG-mapper	796942.HMPREF9623_00735	3D domain protein	NA
UHGV-0140404_10	Pfam	PF06725	3D domain	3D
UHGV-0140404_10	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0140404_10	Structural annotation	PF06725, COG3584	NA	NA
UHGV-0140404_12	UniRef90	UniRef90_N9WI31	RHH_1 domain-containing protein	NA
UHGV-0140404_12	eggNOG-mapper	445971.ANASTE_00673	NA	NA
UHGV-0140404_12	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0140404_12	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0140404_15	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0140404_15	UniRef90	UniRef90_N9V9T9	Spo0A_C domain-containing protein	NA
UHGV-0140404_15	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0140404_15	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0140404_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0140404_17	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0140404_17	eggNOG-mapper	999413.HMPREF1094_02028	NA	NA
UHGV-0140404_17	Structural annotation	PF21578	NA	NA
UHGV-0140404_19	KOfam	K24451	zim; modification methylase	NA
UHGV-0140404_19	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0140404_19	UniRef90	UniRef90_A0A6N2XFY6	Methyltransferase	NA
UHGV-0140404_19	eggNOG-mapper	908340.HMPREF9406_2596	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0140404_19	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0140404_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0140404_19	COG	COG0863	DNA modification methylase	NA
UHGV-0140404_20	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0140404_20	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0140404_20	UniRef90	UniRef90_N9V9T3	Helicase ATP-binding domain-containing protein	NA
UHGV-0140404_20	eggNOG-mapper	999413.HMPREF1094_02025	DEAD-like helicases superfamily	NA
UHGV-0140404_20	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0140404_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0140404_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0140404_20	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-0140404_22	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140404_22	UniRef90	UniRef90_H1BE95	NA	NA
UHGV-0140404_22	eggNOG-mapper	908340.HMPREF9406_2594	NA	NA
UHGV-0140404_22	Pfam	PF12961	NA	DUF3850
UHGV-0140404_25	Structural annotation	PF04319, TIGR00686	NA	NA
UHGV-0140404_26	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0140404_26	UniRef90	UniRef90_A0A412AWF1	Restriction alleviation protein, Lar family	NA
UHGV-0140404_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0140404_26	Structural annotation	PF14354, NF007260, COG4888	NA	NA
UHGV-0140404_27	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0140404_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0140404_27	UniRef90	UniRef90_A0A6N2XFP5	Tyrosine recombinase XerD	NA
UHGV-0140404_27	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0140404_27	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0140404_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140404_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0140404_27	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0140404_28	eggNOG-mapper	269482.Bcep1808_1151	NA	NA
UHGV-0140404_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0140404_34	UniRef90	UniRef90_A0A6N2XDS2	Sigma-70, region 4	NA
UHGV-0140404_34	eggNOG-mapper	1321779.HMPREF1984_01313	NA	NA
UHGV-0140404_34	Pfam	PF07374	NA	DUF1492
UHGV-0140404_34	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0140404_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140404_35	UniRef90	UniRef90_A0A414B846	HNH endonuclease	NA
UHGV-0140404_35	eggNOG-mapper	999413.HMPREF1094_02014	HNH nucleases	NA
UHGV-0140404_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0140404_35	Structural annotation	TIGR02646	NA	NA
UHGV-0140404_37	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0140404_37	UniRef90	UniRef90_A0A1Y4FAU6	Terminase	NA
UHGV-0140404_37	eggNOG-mapper	908340.HMPREF9406_2581	Phage terminase, small subunit	NA
UHGV-0140404_37	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0140404_37	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0140404_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0140404_38	UniRef90	UniRef90_G1VMM3	Phage terminase, large subunit	NA
UHGV-0140404_38	eggNOG-mapper	908340.HMPREF9406_2580	Phage Terminase	NA
UHGV-0140404_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0140404_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0140404_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0140404_38	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0140404_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0140404_39	UniRef90	UniRef90_A0A099I918	Phage portal protein	NA
UHGV-0140404_39	eggNOG-mapper	908340.HMPREF9406_2579	Phage portal protein, HK97 family	NA
UHGV-0140404_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0140404_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0140404_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0140404_39	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0140404_40	KOfam	K06904	NA	NA
UHGV-0140404_40	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0140404_40	UniRef90	UniRef90_G1VMM5	Caudovirus prohead protease	NA
UHGV-0140404_40	eggNOG-mapper	908340.HMPREF9406_2578	Phage prohead protease, HK97 family	NA
UHGV-0140404_40	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0140404_40	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0140404_40	COG	COG3740	Phage head maturation protease	NA
UHGV-0140404_40	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0140404_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0140404_41	UniRef90	UniRef90_N9WI02	HK97 family phage major capsid protein	NA
UHGV-0140404_41	eggNOG-mapper	908340.HMPREF9406_2577	phage major capsid protein, HK97 family	NA
UHGV-0140404_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0140404_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0140404_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0140404_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0140404_42	PHROG	phrog_2550	NA	unknown function
UHGV-0140404_42	eggNOG-mapper	908340.HMPREF9406_2576	NA	NA
UHGV-0140404_43	PHROG	phrog_19734	NA	unknown function
UHGV-0140404_43	UniRef90	UniRef90_A0A3E5GR03	Head-tail adaptor protein	NA
UHGV-0140404_43	eggNOG-mapper	999413.HMPREF1094_02006	NA	NA
UHGV-0140404_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0140404_44	PHROG	phrog_78	tail terminator	connector
UHGV-0140404_44	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0140404_44	Structural annotation	PF05657	NA	NA
UHGV-0140404_45	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0140404_45	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0140404_45	Structural annotation	TIGR01725	NA	NA
UHGV-0140404_46	PHROG	phrog_88	major tail protein	tail
UHGV-0140404_46	UniRef90	UniRef90_N9WHZ7	Phi13 family phage major tail protein	NA
UHGV-0140404_46	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0140404_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0140404_46	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0140404_48	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0140404_48	PHROG	phrog_5218	NA	unknown function
UHGV-0140404_48	UniRef90	UniRef90_N9V933	PhageMin_Tail domain-containing protein	NA
UHGV-0140404_48	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0140404_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0140404_48	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0140404_48	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0140404_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0140404_49	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0140404_49	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0140404_49	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0140404_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0140404_49	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0140404_50	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0140404_50	UniRef90	UniRef90_G1VMN5	Prophage_tail domain-containing protein	NA
UHGV-0140404_50	eggNOG-mapper	908340.HMPREF9406_2568	Phage minor structural protein	NA
UHGV-0140404_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0140404_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0140404_50	COG	COG4926	Phage-related protein	NA
UHGV-0140404_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0140404_51	UniRef90	UniRef90_UPI001E4F503F	collagen-like protein	NA
UHGV-0140404_51	eggNOG-mapper	908340.HMPREF9406_2567	NA	NA
UHGV-0140404_52	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0140404_52	UniRef90	UniRef90_A0A0M2NIZ4	Microcystin dependent protein	NA
UHGV-0140404_52	eggNOG-mapper	908340.HMPREF9406_2566	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0140404_52	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0140404_53	PHROG	phrog_24451	NA	unknown function
UHGV-0140404_53	UniRef90	UniRef90_A0A3P6KYQ0	NA	NA
UHGV-0140404_53	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-0140404_54	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0140404_54	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0140404_55	PHROG	phrog_1129	holin	lysis
UHGV-0140404_55	UniRef90	UniRef90_A0A099I905	Holin	NA
UHGV-0140404_55	eggNOG-mapper	552396.HMPREF0863_01649	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0140404_55	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0140404_55	Structural annotation	PF06946	NA	NA
UHGV-0140404_57	UniRef90	UniRef90_A0A318KDR1	NlpC/P60 family protein	NA
UHGV-0140404_57	eggNOG-mapper	742740.HMPREF9474_01683	Glycosyl hydrolases family 25	NA
UHGV-0140404_57	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0140404_58	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0140404_58	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0140404_58	UniRef90	UniRef90_G1VMP2	HicB-like domain-containing protein	NA
UHGV-0140404_58	eggNOG-mapper	908340.HMPREF9406_2561	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0140404_58	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0140404_58	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0140404_58	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0140404_59	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0140404_59	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0140404_59	UniRef90	UniRef90_D0GMY5	Toxin-antitoxin system, toxin component, HicA family	NA
UHGV-0140404_59	eggNOG-mapper	908340.HMPREF9406_2560	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0140404_59	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0140404_59	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0140404_59	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0140404_60	KOfam	K19117	csd1, cas8c; CRISPR-associated protein Csd1	NA
UHGV-0140404_60	eggNOG-mapper	999413.HMPREF1094_00546	CRISPR-associated protein (Cas_Csd1)	NA
UHGV-0140404_60	PADLOC	pfam09709	CAS-I-C; effector_LS	CRISPR-CAS
UHGV-0140404_60	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0140404_61	PHROG	phrog_25567	NA	unknown function
UHGV-0140404_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140404_63	AcrCatalog	cluster_11486	NA	NA
UHGV-0140404_64	eggNOG-mapper	999413.HMPREF1094_00643	NA	NA