UHGV-0140420

Genome information

Genome length 38,876 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140420
vOTU ID	vOTU-063492
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_375748
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	36
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	103.4
Jumbo phage	No

Genome content
Genome length	38,876 bps
GC content	42.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	94.87%
Average CDS length	598.55 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140420_1	PHROG	phrog_1529	NA	unknown function
UHGV-0140420_1	UniRef90	UniRef90_UPI001E59F9AF	XRE family transcriptional regulator	NA
UHGV-0140420_1	Structural annotation	PF13443, TIGR02607, COG3655	NA	NA
UHGV-0140420_4	PHROG	phrog_6487	NA	unknown function
UHGV-0140420_4	UniRef90	UniRef90_A0A359YI00	NA	NA
UHGV-0140420_4	eggNOG-mapper	999425.HMPREF9186_02055	NA	NA
UHGV-0140420_5	PHROG	phrog_998	endolysin	lysis
UHGV-0140420_5	UniRef90	UniRef90_UPI00066E4AC5	peptidoglycan hydrolase	NA
UHGV-0140420_5	eggNOG-mapper	1069533.Sinf_0802	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0140420_5	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0140420_5	Pfam	PF16775	Target recognition domain of lytic exoenzyme	ZoocinA_TRD
UHGV-0140420_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0140420_5	Structural annotation	PF16775, PF05382, NF008096, COG0791	NA	NA
UHGV-0140420_6	PHROG	phrog_608	holin	lysis
UHGV-0140420_6	UniRef90	UniRef90_I2NHW5	Phage holin, LL-H family	NA
UHGV-0140420_6	eggNOG-mapper	585203.SMSK564_1272	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0140420_6	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0140420_6	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0140420_7	PHROG	phrog_4257	NA	unknown function
UHGV-0140420_7	UniRef90	UniRef90_A0A139QI86	NA	NA
UHGV-0140420_7	eggNOG-mapper	1005705.HMPREF9967_1056	NA	NA
UHGV-0140420_8	PHROG	phrog_1554	NA	unknown function
UHGV-0140420_8	UniRef90	UniRef90_A0A359YI08	NA	NA
UHGV-0140420_8	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-0140420_10	PHROG	phrog_2270	NA	unknown function
UHGV-0140420_10	UniRef90	UniRef90_A0A1F0ZPD4	Gp58 domain-containing protein	NA
UHGV-0140420_10	eggNOG-mapper	537874.B3GW15_9CAUD	peptidoglycan catabolic process	NA
UHGV-0140420_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0140420_10	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0140420_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0140420_10	Structural annotation	PF14594, PF00629, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0140420_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0140420_11	UniRef90	UniRef90_A0A1F0ZPE5	Phage tail protein	NA
UHGV-0140420_11	eggNOG-mapper	537874.B3GW14_9CAUD	Phage tail protein	NA
UHGV-0140420_11	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0140420_11	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0140420_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0140420_12	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0140420_12	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0140420_12	UniRef90	UniRef90_A0A1F0AUB7	TMP_3 domain-containing protein	NA
UHGV-0140420_12	eggNOG-mapper	537874.B3GW13_9CAUD	NA	NA
UHGV-0140420_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0140420_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0140420_12	Structural annotation	PF20155	NA	NA
UHGV-0140420_13	PHROG	phrog_706	NA	unknown function
UHGV-0140420_13	UniRef90	UniRef90_UPI001CBECD66	bacteriophage Gp15 family protein	NA
UHGV-0140420_13	eggNOG-mapper	537874.B3GW12_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0140420_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0140420_13	Structural annotation	PF06854	NA	NA
UHGV-0140420_14	PHROG	phrog_1061	NA	unknown function
UHGV-0140420_14	UniRef90	UniRef90_W4QLE4	NA	NA
UHGV-0140420_14	eggNOG-mapper	537874.B3GW11_9CAUD	NA	NA
UHGV-0140420_14	Structural annotation	PF10666	NA	NA
UHGV-0140420_15	PHROG	phrog_820	major tail protein	tail
UHGV-0140420_15	UniRef90	UniRef90_A0A3A5PYV9	Phage tail protein	NA
UHGV-0140420_15	eggNOG-mapper	537874.B3GW10_9CAUD	NA	NA
UHGV-0140420_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0140420_16	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0140420_16	UniRef90	UniRef90_A0A1F0ZPS1	Capsid protein	NA
UHGV-0140420_16	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-0140420_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0140420_16	Structural annotation	PF12691	NA	NA
UHGV-0140420_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0140420_17	UniRef90	UniRef90_A0A1F0ATP2	Capsid protein	NA
UHGV-0140420_17	eggNOG-mapper	537874.B3GW08_9CAUD	Minor capsid protein	NA
UHGV-0140420_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0140420_17	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0140420_18	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0140420_18	UniRef90	UniRef90_A0A1F0ZPS5	Minor capsid protein	NA
UHGV-0140420_18	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-0140420_18	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0140420_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0140420_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0140420_19	UniRef90	UniRef90_A0A501VK26	NA	NA
UHGV-0140420_19	eggNOG-mapper	764291.STRUR_2099	NA	NA
UHGV-0140420_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0140420_22	UniRef90	UniRef90_A0A1F0ZPF7	N4-gp56 family major capsid protein	NA
UHGV-0140420_22	eggNOG-mapper	1035189.HMPREF9954_0307	NA	NA
UHGV-0140420_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0140420_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0140420_23	UniRef90	UniRef90_A0A1F0ZPZ5	Scaffolding protein	NA
UHGV-0140420_23	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-0140420_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0140420_23	Structural annotation	PF06810	NA	NA
UHGV-0140420_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0140420_24	UniRef90	UniRef90_A0A1F0ZQ22	Capsid protein	NA
UHGV-0140420_24	eggNOG-mapper	537874.B3GW01_9CAUD	Phage minor capsid protein 2	NA
UHGV-0140420_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0140420_24	Structural annotation	PF06152	NA	NA
UHGV-0140420_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0140420_25	UniRef90	UniRef90_A0A1F0AVC3	Capsid protein	NA
UHGV-0140420_25	eggNOG-mapper	537874.B3GW00_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0140420_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0140420_25	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0140420_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0140420_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140420_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0140420_26	UniRef90	UniRef90_A0A2H4JD85	Putative terminase large subunit	NA
UHGV-0140420_26	eggNOG-mapper	1121871.AUAT01000040_gene913	Phage terminase, large subunit	NA
UHGV-0140420_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0140420_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0140420_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0140420_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140420_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0140420_27	PHROG	phrog_2412	NA	unknown function
UHGV-0140420_27	UniRef90	UniRef90_A0A4Y9JAF6	Stress-induced protein	NA
UHGV-0140420_27	eggNOG-mapper	12402.Q708N5_9CAUD	NA	NA
UHGV-0140420_28	PHROG	phrog_10302	NA	unknown function
UHGV-0140420_28	UniRef90	UniRef90_Q92CC5	Lin1263 protein	NA
UHGV-0140420_28	eggNOG-mapper	1035196.HMPREF9998_01727	NA	NA
UHGV-0140420_29	KOfam	K24451	zim; modification methylase	NA
UHGV-0140420_29	PHROG	phrog_12517	NA	unknown function
UHGV-0140420_29	UniRef90	UniRef90_A0A133YTU9	ParB domain-containing protein	NA
UHGV-0140420_29	eggNOG-mapper	1035196.HMPREF9998_01728	NA	NA
UHGV-0140420_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0140420_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0140420_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0140420_29	COG	COG0863	DNA modification methylase	NA
UHGV-0140420_29	Structural annotation	PF02195, PF01170, MF_02015, MF_01872, TIGR01177, TIGR04285, COG1041, COG5119	NA	NA
UHGV-0140420_30	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0140420_30	UniRef90	UniRef90_A0A1F0ATN1	Transcriptional regulator	NA
UHGV-0140420_30	eggNOG-mapper	1054460.SPPN_00355	Transcriptional regulator, ArpU family	NA
UHGV-0140420_30	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0140420_30	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0140420_35	PHROG	phrog_3606	NA	unknown function
UHGV-0140420_36	PHROG	phrog_3972	NA	unknown function
UHGV-0140420_36	UniRef90	UniRef90_D3H760	Prophage Pi3 protein	NA
UHGV-0140420_36	eggNOG-mapper	365659.smi_0430	NA	NA
UHGV-0140420_36	dbAPIS	APIS035	Broad-spectrum counter-defense.	NA
UHGV-0140420_37	PHROG	phrog_98	NA	unknown function
UHGV-0140420_37	UniRef90	UniRef90_A0A1F0ZQ58	YopX domain-containing protein	NA
UHGV-0140420_37	eggNOG-mapper	945021.TEH_08480	YopX protein	NA
UHGV-0140420_37	Pfam	PF09643	YopX protein	YopX
UHGV-0140420_37	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0140420_37	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0140420_38	PHROG	phrog_20891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140420_38	UniRef90	UniRef90_A0A1S5SA27	HNHc domain-containing protein	NA
UHGV-0140420_38	eggNOG-mapper	1286171.EAL2_c05180	HNH endonuclease	NA
UHGV-0140420_38	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0140420_39	PHROG	phrog_121	NA	unknown function
UHGV-0140420_39	UniRef90	UniRef90_UPI000B25F052	NA	NA
UHGV-0140420_39	eggNOG-mapper	585203.SMSK564_1299	NA	NA
UHGV-0140420_39	Pfam	PF07852	NA	DUF1642
UHGV-0140420_39	Structural annotation	PF07852, PF11061	NA	NA
UHGV-0140420_40	UniRef90	UniRef90_A0A139R8H2	Phage DNA-binding protein	NA
UHGV-0140420_41	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-0140420_41	UniRef90	UniRef90_A0A1F0YBE2	DNA-binding protein	NA
UHGV-0140420_41	eggNOG-mapper	999425.HMPREF9186_02016	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0140420_41	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0140420_41	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0140420_43	PHROG	phrog_827	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0140420_43	UniRef90	UniRef90_UPI001CC17D22	crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0140420_43	eggNOG-mapper	180332.JTGN01000008_gene4067	NA	NA
UHGV-0140420_43	Pfam	PF07066	Lactococcus phage M3 protein	DUF3882
UHGV-0140420_43	Structural annotation	PF07066, MF_00034, NF000711, COG0817	NA	NA
UHGV-0140420_44	PHROG	phrog_2486	NA	unknown function
UHGV-0140420_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0140420_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140420_45	UniRef90	UniRef90_A0A1F0ZPI6	Single-stranded DNA-binding protein	NA
UHGV-0140420_45	eggNOG-mapper	888833.HMPREF9421_0771	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0140420_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140420_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0140420_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0140420_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0140420_45	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0140420_46	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140420_46	UniRef90	UniRef90_A0A1F0YBD5	Nuclease	NA
UHGV-0140420_46	eggNOG-mapper	1069533.Sinf_0777	NA	NA
UHGV-0140420_46	Pfam	PF12684	NA	DUF3799
UHGV-0140420_46	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0140420_46	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0140420_47	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0140420_47	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0140420_47	UniRef90	UniRef90_A0A139NAY6	Recombinational DNA repair protein RecT (Prophage associated)	NA
UHGV-0140420_47	eggNOG-mapper	1123302.KB904167_gene495	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0140420_47	Pfam	PF03837	RecT family	RecT
UHGV-0140420_47	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0140420_47	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0140420_47	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0140420_48	PHROG	phrog_20706	NA	unknown function
UHGV-0140420_50	PHROG	phrog_2113	NA	unknown function
UHGV-0140420_50	UniRef90	UniRef90_A0A1F0YB88	HTH_11 domain-containing protein	NA
UHGV-0140420_50	eggNOG-mapper	1123315.AUIP01000028_gene271	NA	NA
UHGV-0140420_50	Pfam	PF08279	HTH domain	HTH_11
UHGV-0140420_50	Structural annotation	PF11994, NF041852, COG3388	NA	NA
UHGV-0140420_53	PHROG	phrog_3624	NA	unknown function
UHGV-0140420_55	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0140420_55	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0140420_55	UniRef90	UniRef90_A0A1F0YB84	AAA domain-containing protein	NA
UHGV-0140420_55	eggNOG-mapper	12402.Q708R1_9CAUD	IstB-like ATP binding protein	NA
UHGV-0140420_55	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0140420_55	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0140420_56	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0140420_56	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0140420_56	UniRef90	UniRef90_UPI0012BBB88B	DnaD domain protein	NA
UHGV-0140420_56	eggNOG-mapper	1289596.M1PFC4_9CAUD	Replication initiation and membrane attachment	NA
UHGV-0140420_56	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0140420_56	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0140420_56	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0140420_56	Structural annotation	PF06970, NF033789, COG3935	NA	NA
UHGV-0140420_57	UniRef90	UniRef90_A0A1F0YAV1	Phage repressor protein	NA
UHGV-0140420_57	eggNOG-mapper	469609.HMPREF0847_02166	NA	NA
UHGV-0140420_57	Pfam	PF05339	NA	DUF739
UHGV-0140420_57	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0140420_58	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0140420_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140420_58	UniRef90	UniRef90_A0A1F0YB07	HTH cro/C1-type domain-containing protein	NA
UHGV-0140420_58	eggNOG-mapper	469609.HMPREF0847_01324	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140420_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140420_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140420_58	Structural annotation	PF01381, MF_00535, TIGR02607, COG3655	NA	NA
UHGV-0140420_59	PHROG	phrog_87	metallo-protease	other
UHGV-0140420_59	UniRef90	UniRef90_A0A1F0YBB9	Peptidase_M78 domain-containing protein	NA
UHGV-0140420_59	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-0140420_59	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0140420_59	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0140420_59	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0140420_62	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0140420_62	PHROG	phrog_95	integrase	integration and excision
UHGV-0140420_62	UniRef90	UniRef90_A0A1F0YAW2	Integrase	NA
UHGV-0140420_62	eggNOG-mapper	1123309.AQYB01000022_gene10	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0140420_62	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0140420_62	Pfam	PF07508	Recombinase	Recombinase
UHGV-0140420_62	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0140420_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0140420_62	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA