UHGV-0140464

Genome information

Genome length 26,610 bps

CDS count 43

Completeness 66.01% (medium-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140464
vOTU ID	vOTU-031442
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_393760
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.78
Jumbo phage	No

Genome content
Genome length	26,610 bps
GC content	49.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	87.71%
Average CDS length	544.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140464_1	KOfam	K12149	dinI; DNA-damage-inducible protein I	NA
UHGV-0140464_1	PHROG	phrog_189	RecA filament binding protein DinI	DNA, RNA and nucleotide metabolism
UHGV-0140464_1	UniRef90	UniRef90_A0A4C6ZKA0	DNA-damage-inducible protein DinI	NA
UHGV-0140464_1	eggNOG-mapper	1399774.JDWH01000044_gene1728	DinI-like family	NA
UHGV-0140464_1	Pfam	PF06183	DinI-like family	DinI
UHGV-0140464_1	Structural annotation	PF06183, NF007893	NA	NA
UHGV-0140464_2	PHROG	phrog_17834	NA	unknown function
UHGV-0140464_2	UniRef90	UniRef90_UPI000EF28CFA	tail fiber domain-containing protein	NA
UHGV-0140464_2	eggNOG-mapper	101570.Q5G8V6_9CAUD	peptidoglycan catabolic process	NA
UHGV-0140464_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0140464_2	Structural annotation	PF12195	NA	NA
UHGV-0140464_3	PHROG	phrog_1119	Cor superinfection exclusion protein	moron, auxiliary metabolic gene and host takeover
UHGV-0140464_3	UniRef90	UniRef90_A0A0P8HH13	Cor protein	NA
UHGV-0140464_3	eggNOG-mapper	399742.Ent638_2217	NA	NA
UHGV-0140464_3	dbAPIS	APIS032	Superinfection exclusion, inactivates FhuA receptor.	NA
UHGV-0140464_3	Structural annotation	PF11717, NF007197, COG4568	NA	NA
UHGV-0140464_4	PHROG	phrog_425	membrane associated protein	moron, auxiliary metabolic gene and host takeover
UHGV-0140464_4	UniRef90	UniRef90_O64337	Gp23	NA
UHGV-0140464_4	eggNOG-mapper	40631.O64337_BPN15	NA	NA
UHGV-0140464_4	Structural annotation	PF20051	NA	NA
UHGV-0140464_5	PHROG	phrog_557	outer membrane protein	other
UHGV-0140464_5	UniRef90	UniRef90_A0A2R4PH40	Phage-like protein	NA
UHGV-0140464_5	eggNOG-mapper	1147158.K7PJS1_9CAUD	NA	NA
UHGV-0140464_6	PHROG	phrog_2589	tail protein	tail
UHGV-0140464_6	UniRef90	UniRef90_UPI001F318B6A	NA	NA
UHGV-0140464_6	eggNOG-mapper	1080067.BAZH01000027_gene3170	Putative phage tail protein	NA
UHGV-0140464_6	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0140464_6	Pfam	PF09327	NA	DUF1983
UHGV-0140464_6	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0140464_6	Structural annotation	PF09327, PF13550, PF16323, PF16383, PF14109, NF040662, COG4733	NA	NA
UHGV-0140464_7	PHROG	phrog_32	tail assembly protein	tail
UHGV-0140464_7	UniRef90	UniRef90_A0A1X1LSC0	Tail assembly protein	NA
UHGV-0140464_7	eggNOG-mapper	1147157.K7PM97_9CAUD	virus tail assembly	NA
UHGV-0140464_7	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-0140464_8	PHROG	phrog_914	NA	unknown function
UHGV-0140464_8	UniRef90	UniRef90_Q6UAW3	Gp19	NA
UHGV-0140464_8	eggNOG-mapper	35703.DQ02_13915	NA	NA
UHGV-0140464_8	Structural annotation	PF12092	NA	NA
UHGV-0140464_9	PHROG	phrog_2320	NA	unknown function
UHGV-0140464_9	eggNOG-mapper	1006000.GKAS_03248	NA	NA
UHGV-0140464_10	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0140464_10	PHROG	phrog_30	minor tail protein	tail
UHGV-0140464_10	UniRef90	UniRef90_A0A7Z8BXK9	Peptidase P60	NA
UHGV-0140464_10	eggNOG-mapper	1147158.K7PGV2_9CAUD	peptidoglycan catabolic process	NA
UHGV-0140464_10	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-0140464_10	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0140464_10	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-0140464_11	PHROG	phrog_18	minor tail protein	tail
UHGV-0140464_11	UniRef90	UniRef90_Q9MCS1	Gp18	NA
UHGV-0140464_11	eggNOG-mapper	906668.G8C7J7_9CAUD	Phage minor tail protein L	NA
UHGV-0140464_11	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0140464_11	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0140464_11	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0140464_12	PHROG	phrog_14	minor tail protein	tail
UHGV-0140464_12	UniRef90	UniRef90_K7P828	Minor tail protein	NA
UHGV-0140464_12	eggNOG-mapper	432200.K7P7R1_9CAUD	Phage minor tail protein	NA
UHGV-0140464_12	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0140464_12	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0140464_13	PHROG	phrog_10282	NA	unknown function
UHGV-0140464_13	eggNOG-mapper	1147143.K7P7A6_9CAUD	NA	NA
UHGV-0140464_14	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140464_14	UniRef90	UniRef90_K7P7P6	HNHc domain-containing protein	NA
UHGV-0140464_14	eggNOG-mapper	1147145.K7P7P6_9CAUD	HNH endonuclease	NA
UHGV-0140464_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0140464_15	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0140464_15	UniRef90	UniRef90_A0A7I7FZX7	Bacteriophage protein	NA
UHGV-0140464_15	eggNOG-mapper	432200.K7P7D2_9CAUD	transferase activity	NA
UHGV-0140464_15	Structural annotation	PF03071, TIGR03937, COG3306	NA	NA
UHGV-0140464_16	PHROG	phrog_1579	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0140464_16	UniRef90	UniRef90_A0A0F6RFB5	Glycosyltransferase	NA
UHGV-0140464_16	eggNOG-mapper	716541.ECL_01682	Glycosyl transferase, family 2	NA
UHGV-0140464_16	COG	COG1216	Glycosyltransferase, GT2 family	NA
UHGV-0140464_16	Structural annotation	PF03414, PF13641, MF_01520, TIGR03965, NF041524, COG1216, COG1442	NA	NA
UHGV-0140464_17	PHROG	phrog_16910	NA	unknown function
UHGV-0140464_17	UniRef90	UniRef90_UPI001C8C4339	NA	NA
UHGV-0140464_17	eggNOG-mapper	10713.M9NZE9_BPPH8	NA	NA
UHGV-0140464_19	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0140464_19	UniRef90	UniRef90_UPI001C5AC0A9	NA	NA
UHGV-0140464_19	eggNOG-mapper	906669.G8C7W1_9CAUD	NA	NA
UHGV-0140464_21	PHROG	phrog_198	holin	lysis
UHGV-0140464_21	UniRef90	UniRef90_UPI001C643637	phage holin family protein	NA
UHGV-0140464_21	eggNOG-mapper	977880.RALTA_A0925	Putative phage holin	NA
UHGV-0140464_21	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0140464_21	Structural annotation	PF16931	NA	NA
UHGV-0140464_22	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0140464_22	UniRef90	UniRef90_A0A2U3F230	Antitermination protein	NA
UHGV-0140464_22	eggNOG-mapper	1197719.A464_2031	Antitermination protein	NA
UHGV-0140464_22	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0140464_22	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0140464_22	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0140464_22	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0140464_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0140464_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0140464_23	UniRef90	UniRef90_A0A0P8K6E2	Helicase	NA
UHGV-0140464_23	eggNOG-mapper	1399774.JDWH01000024_gene4226	DnaB-like helicase N terminal domain	NA
UHGV-0140464_23	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0140464_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0140464_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-0140464_23	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0140464_24	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0140464_24	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0140464_24	UniRef90	UniRef90_A0A0P8HH73	AAA family ATPase	NA
UHGV-0140464_24	eggNOG-mapper	1399774.JDWH01000024_gene4225	DNA replication protein	NA
UHGV-0140464_24	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0140464_24	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0140464_24	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0140464_25	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0140464_25	UniRef90	UniRef90_UPI000EF26063	helix-turn-helix domain-containing protein	NA
UHGV-0140464_25	eggNOG-mapper	1399774.JDWH01000024_gene4224	Helix-turn-helix domain	NA
UHGV-0140464_25	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0140464_25	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0140464_25	Structural annotation	PF13730, MF_01909, TIGR02702, COG4738	NA	NA
UHGV-0140464_28	UniRef90	UniRef90_A0A2H9CIY4	Transcriptional regulator	NA
UHGV-0140464_28	eggNOG-mapper	406818.XBJ1_3974	NA	NA
UHGV-0140464_28	Structural annotation	PF01381, NF041677, COG4197	NA	NA
UHGV-0140464_29	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0140464_29	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0140464_29	UniRef90	UniRef90_A0A2H9C590	LexA repressor	NA
UHGV-0140464_29	eggNOG-mapper	1147149.K7PK07_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0140464_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140464_29	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0140464_29	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0140464_31	PHROG	phrog_4587	NA	unknown function
UHGV-0140464_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140464_32	PHROG	phrog_27579	NA	unknown function
UHGV-0140464_35	PHROG	phrog_1737	NA	unknown function
UHGV-0140464_35	UniRef90	UniRef90_A0A085AB20	NA	NA
UHGV-0140464_35	eggNOG-mapper	1197719.A464_2042	NA	NA
UHGV-0140464_35	Structural annotation	PF17345	NA	NA
UHGV-0140464_36	PHROG	phrog_1886	NA	unknown function
UHGV-0140464_36	eggNOG-mapper	716541.ECL_02716	NA	NA
UHGV-0140464_37	PHROG	phrog_1515	NA	unknown function
UHGV-0140464_37	UniRef90	UniRef90_A0A2R4PH07	Phage-like protein	NA
UHGV-0140464_37	eggNOG-mapper	716541.ECL_02717	NA	NA
UHGV-0140464_37	Structural annotation	PF17345	NA	NA
UHGV-0140464_38	PHROG	phrog_3007	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0140464_38	UniRef90	UniRef90_A0A2R4PGZ4	Phage-like protein	NA
UHGV-0140464_38	eggNOG-mapper	1205683.CAKR01000013_gene1136	NA	NA
UHGV-0140464_38	Structural annotation	MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0140464_39	PHROG	phrog_1001	NA	unknown function
UHGV-0140464_39	eggNOG-mapper	1197719.A464_2047	NA	NA
UHGV-0140464_39	Structural annotation	PF00936, MF_00854, NF012018, COG4577	NA	NA
UHGV-0140464_40	UniRef90	UniRef90_UPI0015E97D81	ATPase	NA
UHGV-0140464_40	eggNOG-mapper	1197719.A464_2049	NA	NA
UHGV-0140464_42	PHROG	phrog_539	excisionase	integration and excision
UHGV-0140464_42	UniRef90	UniRef90_A0A0P8I4G4	Excisionase	NA
UHGV-0140464_42	eggNOG-mapper	716541.ECL_02720	NA	NA
UHGV-0140464_42	Pfam	PF06806	NA	DUF1233
UHGV-0140464_42	Structural annotation	PF06806	NA	NA
UHGV-0140464_43	KOfam	K14059	int; integrase	NA
UHGV-0140464_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0140464_43	UniRef90	UniRef90_A0A653FUM6	Integrase	NA
UHGV-0140464_43	eggNOG-mapper	716541.ECL_02721	Belongs to the 'phage' integrase family	NA
UHGV-0140464_43	Pfam	PF12167	Arm DNA-binding domain	Arm-DNA-bind_2
UHGV-0140464_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140464_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140464_43	Structural annotation	PF00589, PF12167, PF14659, MF_01808, TIGR02224, COG4974	NA	NA