UHGV-0140598

Genome information

Genome length 28,905 bps

CDS count 47

Completeness 76.93% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140598
vOTU ID	vOTU-032167
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_393735
BioSample	SAMN04436860
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.02
Jumbo phage	No

Genome content
Genome length	28,905 bps
GC content	31.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.48%
Average CDS length	570.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140598_2	PHROG	phrog_10625	NA	unknown function
UHGV-0140598_2	Structural annotation	PF14634	NA	NA
UHGV-0140598_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0140598_4	UniRef90	UniRef90_UPI000C084940	siphovirus Gp157 family protein	NA
UHGV-0140598_4	eggNOG-mapper	1499683.CCFF01000014_gene3558	Siphovirus Gp157	NA
UHGV-0140598_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0140598_4	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0140598_5	PHROG	phrog_14970	NA	unknown function
UHGV-0140598_5	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0140598_5	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0140598_5	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0140598_5	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0140598_5	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0140598_7	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0140598_7	UniRef90	UniRef90_UPI000C082241	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0140598_7	eggNOG-mapper	1499683.CCFF01000013_gene501	phage replisome	NA
UHGV-0140598_7	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0140598_7	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0140598_7	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0140598_8	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0140598_8	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0140598_8	UniRef90	UniRef90_A0A7T0GMR8	DNA helicase	NA
UHGV-0140598_8	eggNOG-mapper	1408306.JHXX01000004_gene379	Participates in initiation and elongation during chromosome replication	NA
UHGV-0140598_8	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0140598_8	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0140598_8	COG	COG0305	Replicative DNA helicase	NA
UHGV-0140598_8	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0140598_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0140598_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140598_11	UniRef90	UniRef90_UPI000C087C34	single-stranded DNA-binding protein	NA
UHGV-0140598_11	eggNOG-mapper	1391647.AVSV01000022_gene2534	Single-stranded DNA-binding protein	NA
UHGV-0140598_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140598_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0140598_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0140598_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0140598_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0140598_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0140598_12	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0140598_12	UniRef90	UniRef90_UPI000C08AB2C	DNA cytosine methyltransferase	NA
UHGV-0140598_12	eggNOG-mapper	1211817.CCAT010000049_gene2479	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0140598_12	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0140598_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0140598_12	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0140598_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0140598_12	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0140598_15	PHROG	phrog_98	NA	unknown function
UHGV-0140598_15	UniRef90	UniRef90_UPI00189ECD6F	YopX family protein	NA
UHGV-0140598_15	eggNOG-mapper	536233.CLO_1555	YopX protein	NA
UHGV-0140598_15	Pfam	PF09643	YopX protein	YopX
UHGV-0140598_15	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0140598_16	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0140598_16	UniRef90	UniRef90_A0A1V9I0L9	ERCC4 domain-containing protein	NA
UHGV-0140598_16	eggNOG-mapper	1443122.Z958_05760	ERCC4 domain	NA
UHGV-0140598_16	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0140598_16	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0140598_17	UniRef90	UniRef90_UPI000C077448	metallophosphoesterase family protein	NA
UHGV-0140598_17	Pfam	PF12850	Calcineurin-like phosphoesterase superfamily domain	Metallophos_2
UHGV-0140598_19	PHROG	phrog_236	nucleotide kinase	other
UHGV-0140598_19	UniRef90	UniRef90_UPI001A9A39DC	NA	NA
UHGV-0140598_19	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0140598_19	Pfam	PF11753	NA	DUF3310
UHGV-0140598_22	PHROG	phrog_10157	NA	unknown function
UHGV-0140598_22	UniRef90	UniRef90_UPI000C076F29	helix-turn-helix domain-containing protein	NA
UHGV-0140598_22	Structural annotation	PF04545, MF_00674, NF009180, COG2771	NA	NA
UHGV-0140598_23	PHROG	phrog_37916	NA	unknown function
UHGV-0140598_25	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0140598_25	UniRef90	UniRef90_UPI000C0728F3	phBC6A51 family helix-turn-helix protein	NA
UHGV-0140598_25	eggNOG-mapper	1391647.AVSV01000022_gene2554	NA	NA
UHGV-0140598_25	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0140598_25	Structural annotation	PF13022, COG3677	NA	NA
UHGV-0140598_26	PHROG	phrog_11978	NA	unknown function
UHGV-0140598_26	UniRef90	UniRef90_A0A0C1R0Y0	Putative 6-phospho-beta-glucosidase BglA	NA
UHGV-0140598_26	eggNOG-mapper	1123405.AUMM01000039_gene155	TIGRFAM Phage	NA
UHGV-0140598_26	COG	COG5362	Phage terminase large subunit	NA
UHGV-0140598_26	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0140598_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0140598_27	UniRef90	UniRef90_UPI000EA3F913	phage portal protein	NA
UHGV-0140598_27	eggNOG-mapper	536233.CLO_1562	portal protein, SPP1 Gp6-like	NA
UHGV-0140598_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0140598_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0140598_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0140598_28	UniRef90	UniRef90_UPI000C06D26A	minor capsid protein	NA
UHGV-0140598_28	eggNOG-mapper	1499683.CCFF01000005_gene66	Phage Mu protein F like protein	NA
UHGV-0140598_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0140598_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0140598_28	COG	COG2369	NA	NA
UHGV-0140598_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0140598_30	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0140598_30	UniRef90	UniRef90_UPI000C086442	NA	NA
UHGV-0140598_30	eggNOG-mapper	1415774.U728_1666	NA	NA
UHGV-0140598_30	Pfam	PF14265	NA	DUF4355
UHGV-0140598_30	Structural annotation	PF14265	NA	NA
UHGV-0140598_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0140598_31	UniRef90	UniRef90_A0A3P6KSI0	NA	NA
UHGV-0140598_31	eggNOG-mapper	1415774.U728_1665	NA	NA
UHGV-0140598_31	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0140598_33	UniRef90	UniRef90_UPI0013C967CA	phage head-tail connector protein	NA
UHGV-0140598_33	eggNOG-mapper	1499683.CCFF01000005_gene71	NA	NA
UHGV-0140598_34	eggNOG-mapper	1391647.AVSV01000022_gene2564	NA	NA
UHGV-0140598_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0140598_35	UniRef90	UniRef90_UPI000EA091A2	HK97 gp10 family phage protein	NA
UHGV-0140598_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0140598_35	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0140598_36	Structural annotation	PF20765	NA	NA
UHGV-0140598_37	PHROG	phrog_885	major tail protein	tail
UHGV-0140598_37	eggNOG-mapper	1123309.AQYB01000018_gene816	NA	NA
UHGV-0140598_37	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0140598_38	PHROG	phrog_1021	NA	unknown function
UHGV-0140598_38	eggNOG-mapper	1443125.Z962_07950	NA	NA
UHGV-0140598_40	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0140598_40	UniRef90	UniRef90_UPI00189A2A14	phage tail tape measure protein	NA
UHGV-0140598_40	eggNOG-mapper	1321778.HMPREF1982_03558	phage tail tape measure protein	NA
UHGV-0140598_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0140598_40	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0140598_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0140598_41	UniRef90	UniRef90_UPI000C0747FD	phage tail family protein	NA
UHGV-0140598_41	eggNOG-mapper	573061.Clocel_0222	tail component	NA
UHGV-0140598_41	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0140598_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0140598_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0140598_42	PHROG	phrog_7043	tail protein	tail
UHGV-0140598_42	UniRef90	UniRef90_UPI000EA2B1DE	phage tail protein	NA
UHGV-0140598_42	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0140598_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0140598_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0140598_42	COG	COG4926	Phage-related protein	NA
UHGV-0140598_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0140598_44	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0140598_44	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0140598_44	UniRef90	UniRef90_UPI00189D6502	SGNH/GDSL hydrolase family protein	NA
UHGV-0140598_44	eggNOG-mapper	1280689.AUJC01000011_gene1533	NA	NA
UHGV-0140598_44	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0140598_44	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0140598_44	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0140598_44	Structural annotation	PF10651, PF16255, NF040788, COG2755, COG5456	NA	NA
UHGV-0140598_45	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-0140598_45	UniRef90	UniRef90_UPI000BE2C14C	BhlA/UviB family holin-like peptide	NA
UHGV-0140598_45	eggNOG-mapper	1415774.U728_1063	BhlA holin family	NA
UHGV-0140598_45	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0140598_46	PHROG	phrog_34399	NA	unknown function
UHGV-0140598_46	UniRef90	UniRef90_B2TMH8	Putative membrane protein	NA
UHGV-0140598_46	eggNOG-mapper	536232.CLM_1681	NA	NA
UHGV-0140598_47	KOfam	K07273	acm; lysozyme	NA
UHGV-0140598_47	PHROG	phrog_6219	endolysin	lysis
UHGV-0140598_47	UniRef90	UniRef90_UPI000EA2B524	glycoside hydrolase	NA
UHGV-0140598_47	eggNOG-mapper	999411.HMPREF1092_03098	family 25	NA
UHGV-0140598_47	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0140598_47	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0140598_47	Structural annotation	PF01183, PF08230, COG3757	NA	NA