UHGV-0140609

Genome information

Genome length 40,390 bps

CDS count 46

Completeness 98.26% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140609
vOTU ID	vOTU-069485
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_376244
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.19
Jumbo phage	No

Genome content
Genome length	40,390 bps
GC content	43.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.94%
Average CDS length	838.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140609_1	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0140609_1	UniRef90	UniRef90_F5KZP9	HTH_59 domain-containing protein	NA
UHGV-0140609_1	eggNOG-mapper	1401067.HMPREF0872_03330	NA	NA
UHGV-0140609_1	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0140609_1	Structural annotation	PF20038, NF040990	NA	NA
UHGV-0140609_2	UniRef90	UniRef90_F5KZP8	Conserved domain protein	NA
UHGV-0140609_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0140609_4	PHROG	phrog_435	endolysin	lysis
UHGV-0140609_4	UniRef90	UniRef90_A0A6N3A5B7	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0140609_4	eggNOG-mapper	546273.VEIDISOL_00739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0140609_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0140609_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0140609_4	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0140609_5	PHROG	phrog_27828	NA	unknown function
UHGV-0140609_5	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0140609_5	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0140609_7	PHROG	phrog_25213	NA	unknown function
UHGV-0140609_8	PHROG	phrog_2427	NA	unknown function
UHGV-0140609_9	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0140609_9	UniRef90	UniRef90_F5KZP0	Fibronectin type III domain protein	NA
UHGV-0140609_9	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0140609_9	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0140609_9	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0140609_9	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0140609_9	COG	COG1511	NA	NA
UHGV-0140609_9	Structural annotation	PF13550, PF16383, PF00041, PF17936, PF14109, MF_04116, NF040662, NF033506, COG4733	NA	NA
UHGV-0140609_10	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0140609_10	PHROG	phrog_329	minor tail protein	tail
UHGV-0140609_10	UniRef90	UniRef90_UPI00068174D5	NlpC/P60 family protein	NA
UHGV-0140609_10	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0140609_10	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0140609_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0140609_10	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0140609_11	PHROG	phrog_18	minor tail protein	tail
UHGV-0140609_11	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0140609_11	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0140609_11	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0140609_11	COG	COG4672	Phage tail protein	NA
UHGV-0140609_11	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0140609_12	PHROG	phrog_22443	NA	unknown function
UHGV-0140609_12	UniRef90	UniRef90_F5KZN7	Phage tail tape measure protein, lambda family	NA
UHGV-0140609_12	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0140609_12	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0140609_12	COG	COG4913	NA	NA
UHGV-0140609_12	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0140609_13	PHROG	phrog_23549	NA	unknown function
UHGV-0140609_13	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-0140609_13	Structural annotation	PF08809	NA	NA
UHGV-0140609_14	PHROG	phrog_27248	NA	unknown function
UHGV-0140609_15	PHROG	phrog_290	minor tail protein	tail
UHGV-0140609_15	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0140609_15	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0140609_15	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0140609_15	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0140609_16	PHROG	phrog_17431	NA	unknown function
UHGV-0140609_16	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0140609_16	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0140609_17	PHROG	phrog_222	tail protein	tail
UHGV-0140609_17	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0140609_17	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0140609_17	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0140609_18	PHROG	phrog_27032	NA	unknown function
UHGV-0140609_18	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0140609_19	PHROG	phrog_122	head decoration	head and packaging
UHGV-0140609_19	UniRef90	UniRef90_A0A4Q9TLG5	NA	NA
UHGV-0140609_19	eggNOG-mapper	1235835.C814_03476	NA	NA
UHGV-0140609_19	Pfam	PF09956	NA	DUF2190
UHGV-0140609_19	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0140609_19	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0140609_20	KOfam	K06904	NA	NA
UHGV-0140609_20	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0140609_20	UniRef90	UniRef90_A0A2S7YZ16	Peptidase	NA
UHGV-0140609_20	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0140609_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0140609_20	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0140609_20	COG	COG3087	Cell division protein FtsN	NA
UHGV-0140609_20	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0140609_21	PHROG	phrog_21	portal protein	head and packaging
UHGV-0140609_21	UniRef90	UniRef90_A0A2S7YZ05	Phage portal protein	NA
UHGV-0140609_21	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0140609_21	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0140609_21	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0140609_21	COG	COG5511	Phage capsid protein	NA
UHGV-0140609_21	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0140609_22	PHROG	phrog_20307	NA	unknown function
UHGV-0140609_22	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0140609_22	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0140609_23	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0140609_23	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0140609_23	UniRef90	UniRef90_A0A2S7YYZ0	Terminase	NA
UHGV-0140609_23	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0140609_23	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0140609_23	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0140609_23	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0140609_23	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0140609_24	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0140609_24	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-0140609_24	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0140609_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0140609_25	UniRef90	UniRef90_U7UBY9	PF07374 family protein	NA
UHGV-0140609_25	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-0140609_25	Pfam	PF07374	NA	DUF1492
UHGV-0140609_25	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0140609_26	Structural annotation	PF18895, NF009243	NA	NA
UHGV-0140609_28	PHROG	phrog_236	nucleotide kinase	other
UHGV-0140609_28	UniRef90	UniRef90_UPI00098A44D4	NA	NA
UHGV-0140609_28	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0140609_28	Pfam	PF11753	NA	DUF3310
UHGV-0140609_28	Structural annotation	PF11753	NA	NA
UHGV-0140609_29	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0140609_29	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0140609_29	UniRef90	UniRef90_A0A2S7YZ18	DEAD/DEAH box helicase	NA
UHGV-0140609_29	eggNOG-mapper	706434.HMPREF9429_00390	SNF2 family N-terminal domain protein	NA
UHGV-0140609_29	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0140609_29	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0140609_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0140609_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0140609_29	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-0140609_30	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140609_30	UniRef90	UniRef90_A0A2S7YZ17	VRR-NUC domain-containing protein	NA
UHGV-0140609_30	eggNOG-mapper	706434.HMPREF9429_00391	VRR_NUC	NA
UHGV-0140609_30	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0140609_31	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0140609_31	UniRef90	UniRef90_A0A2S7YZ26	Virulence-associated protein E	NA
UHGV-0140609_31	eggNOG-mapper	706434.HMPREF9429_00392	Virulence-associated protein E	NA
UHGV-0140609_31	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0140609_31	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0140609_31	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0140609_32	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0140609_32	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0140609_32	UniRef90	UniRef90_A0A2S7YZ14	POLAc domain-containing protein	NA
UHGV-0140609_32	eggNOG-mapper	1128111.HMPREF0870_01780	DNA polymerase	NA
UHGV-0140609_32	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0140609_32	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0140609_32	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0140609_33	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0140609_33	UniRef90	UniRef90_A0A2S7YZ12	NA	NA
UHGV-0140609_33	eggNOG-mapper	706434.HMPREF9429_00394	NA	NA
UHGV-0140609_33	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0140609_33	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0140609_34	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0140609_34	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0140609_34	UniRef90	UniRef90_A0A2S7YZ00	NA	NA
UHGV-0140609_34	eggNOG-mapper	706434.HMPREF9429_00395	NA	NA
UHGV-0140609_34	Pfam	PF10926	NA	DUF2800
UHGV-0140609_34	COG	COG2887	RecB family exonuclease	NA
UHGV-0140609_34	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0140609_35	PHROG	phrog_18562	NA	unknown function
UHGV-0140609_35	eggNOG-mapper	592028.GCWU000321_01361	NA	NA
UHGV-0140609_36	KOfam	K24451	zim; modification methylase	NA
UHGV-0140609_36	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0140609_36	UniRef90	UniRef90_A0A2S7YZ09	Methyltransferase	NA
UHGV-0140609_36	eggNOG-mapper	1111454.HMPREF1250_1036	DNA methylase	NA
UHGV-0140609_36	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0140609_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0140609_36	COG	COG0863	DNA modification methylase	NA
UHGV-0140609_36	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0140609_37	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0140609_37	UniRef90	UniRef90_UPI001D073C21	NA	NA
UHGV-0140609_37	eggNOG-mapper	883156.HMPREF9282_01229	NA	NA
UHGV-0140609_37	Pfam	PF14359	NA	DUF4406
UHGV-0140609_37	Structural annotation	PF14359	NA	NA
UHGV-0140609_38	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0140609_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0140609_38	UniRef90	UniRef90_A0A2S7YZ25	Helicase	NA
UHGV-0140609_38	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-0140609_38	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0140609_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0140609_38	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0140609_38	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-0140609_39	PHROG	phrog_3489	NA	unknown function
UHGV-0140609_39	Structural annotation	PF19157	NA	NA
UHGV-0140609_40	PHROG	phrog_30876	NA	unknown function
UHGV-0140609_40	UniRef90	UniRef90_F5KZK9	Conserved domain protein	NA
UHGV-0140609_41	PHROG	phrog_29542	NA	unknown function
UHGV-0140609_42	PHROG	phrog_6058	NA	unknown function
UHGV-0140609_42	Structural annotation	PF09035, NF033787	NA	NA
UHGV-0140609_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0140609_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140609_43	UniRef90	UniRef90_F5KZK6	DNA-binding helix-turn-helix protein	NA
UHGV-0140609_43	eggNOG-mapper	521393.JH806632_gene1096	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140609_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140609_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0140609_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0140609_44	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0140609_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0140609_44	UniRef90	UniRef90_F5KZK5	DNA-binding helix-turn-helix protein	NA
UHGV-0140609_44	eggNOG-mapper	596315.HMPREF0634_1108	helix-turn-helix	NA
UHGV-0140609_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140609_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0140609_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0140609_44	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0140609_45	UniRef90	UniRef90_D6KK82	Ribosomal protein S4	NA
UHGV-0140609_45	eggNOG-mapper	866776.HMPREF9321_1007	Domain present in PSD-95, Dlg, and ZO-1/2.	NA
UHGV-0140609_45	Pfam	PF17820	PDZ domain	PDZ_6
UHGV-0140609_46	KOfam	K14059	int; integrase	NA
UHGV-0140609_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0140609_46	UniRef90	UniRef90_A0A3A6W8L8	Site-specific integrase	NA
UHGV-0140609_46	eggNOG-mapper	1401067.HMPREF0872_03560	Belongs to the 'phage' integrase family	NA
UHGV-0140609_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140609_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140609_46	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA