UHGV-0140613

Genome information

Genome length 32,109 bps

CDS count 40

Completeness 80.78% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0140613
vOTU ID	vOTU-042475
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_376254
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.03
Jumbo phage	No

Genome content
Genome length	32,109 bps
GC content	28.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	85.02%
Average CDS length	684.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0140613_2	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0140613_2	UniRef90	UniRef90_A0A0B3VTK9	Phg_2220_C domain-containing protein	NA
UHGV-0140613_2	eggNOG-mapper	1009370.ALO_12756	NA	NA
UHGV-0140613_2	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0140613_2	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0140613_2	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0140613_2	Structural annotation	PF09524, PF02334, TIGR02220	NA	NA
UHGV-0140613_3	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0140613_3	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0140613_3	UniRef90	UniRef90_UPI0004AF2BB0	AAA family ATPase	NA
UHGV-0140613_3	eggNOG-mapper	1301100.HG529227_gene5459	Participates in initiation and elongation during chromosome replication	NA
UHGV-0140613_3	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0140613_3	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0140613_3	COG	COG0305	Replicative DNA helicase	NA
UHGV-0140613_3	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0140613_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0140613_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0140613_5	UniRef90	UniRef90_A0A0B3W1J4	Single-stranded DNA-binding protein	NA
UHGV-0140613_5	eggNOG-mapper	596315.HMPREF0634_0385	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0140613_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0140613_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0140613_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0140613_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0140613_5	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0140613_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0140613_8	UniRef90	UniRef90_A0A0B3VH46	Sigma70_r4 domain-containing protein	NA
UHGV-0140613_8	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0140613_9	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0140613_9	PHROG	phrog_216	integrase	integration and excision
UHGV-0140613_9	UniRef90	UniRef90_A0A0B3WNN4	Integrase	NA
UHGV-0140613_9	eggNOG-mapper	457396.CSBG_01042	Phage integrase family	NA
UHGV-0140613_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0140613_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0140613_9	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0140613_10	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0140613_10	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0140613_10	UniRef90	UniRef90_A0A0B3VU34	Resolvase	NA
UHGV-0140613_10	eggNOG-mapper	1321778.HMPREF1982_03545	Resolvase, N terminal domain	NA
UHGV-0140613_10	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0140613_10	Pfam	PF08279	HTH domain	HTH_11
UHGV-0140613_10	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0140613_10	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0140613_11	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0140613_11	UniRef90	UniRef90_A0A1C6HZX5	Phage terminase small subunit	NA
UHGV-0140613_11	eggNOG-mapper	1211817.CCAT010000007_gene1043	DNA packaging	NA
UHGV-0140613_11	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0140613_11	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0140613_11	COG	COG5484	NA	NA
UHGV-0140613_11	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-0140613_12	PHROG	phrog_2428	NA	unknown function
UHGV-0140613_12	UniRef90	UniRef90_A0A0B3W1I8	ABC transporter ATPase	NA
UHGV-0140613_12	eggNOG-mapper	632245.CLP_1645	NA	NA
UHGV-0140613_12	dbAPIS	APIS024	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	NA
UHGV-0140613_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0140613_13	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0140613_13	UniRef90	UniRef90_A0A0B3VH41	Terminase	NA
UHGV-0140613_13	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-0140613_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0140613_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0140613_13	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0140613_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0140613_14	UniRef90	UniRef90_A0A0B3WNM7	Capsid protein	NA
UHGV-0140613_14	eggNOG-mapper	195103.CPF_0951	NA	NA
UHGV-0140613_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0140613_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0140613_15	UniRef90	UniRef90_UPI00129E2690	capsid protein	NA
UHGV-0140613_15	eggNOG-mapper	1391647.AVSV01000003_gene1804	Phage minor capsid protein 2	NA
UHGV-0140613_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0140613_15	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0140613_15	COG	COG2369	NA	NA
UHGV-0140613_15	Structural annotation	PF06152	NA	NA
UHGV-0140613_16	PHROG	phrog_1865	NA	unknown function
UHGV-0140613_16	UniRef90	UniRef90_A0A6P1WX26	LSM domain protein	NA
UHGV-0140613_16	eggNOG-mapper	1582156.A0A0A8WJ56_9CAUD	NA	NA
UHGV-0140613_16	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-0140613_18	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0140613_18	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0140613_18	eggNOG-mapper	1305708.M9Q248_9CAUD	NA	NA
UHGV-0140613_18	Structural annotation	PF10788	NA	NA
UHGV-0140613_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0140613_19	UniRef90	UniRef90_A0A0B3W1I1	Capsid protein	NA
UHGV-0140613_19	eggNOG-mapper	195103.CPF_0956	NA	NA
UHGV-0140613_19	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0140613_20	PHROG	phrog_1378	NA	unknown function
UHGV-0140613_20	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0140613_20	eggNOG-mapper	1391647.AVSV01000003_gene1809	NA	NA
UHGV-0140613_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0140613_21	eggNOG-mapper	1280692.AUJL01000027_gene2158	NA	NA
UHGV-0140613_22	PHROG	phrog_8710	NA	unknown function
UHGV-0140613_22	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0140613_22	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-0140613_22	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0140613_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0140613_23	UniRef90	UniRef90_UPI000C085B44	minor capsid protein	NA
UHGV-0140613_23	eggNOG-mapper	1280692.AUJL01000027_gene2156	Minor capsid protein	NA
UHGV-0140613_24	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0140613_24	UniRef90	UniRef90_UPI00129ED4DA	minor capsid protein	NA
UHGV-0140613_24	eggNOG-mapper	1280692.AUJL01000027_gene2155	NA	NA
UHGV-0140613_24	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0140613_24	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0140613_25	PHROG	phrog_820	major tail protein	tail
UHGV-0140613_25	UniRef90	UniRef90_U2PYP6	Big_5 domain-containing protein	NA
UHGV-0140613_25	eggNOG-mapper	1280692.AUJL01000027_gene2154	domain, Protein	NA
UHGV-0140613_25	COG	COG5492	NA	NA
UHGV-0140613_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0140613_26	PHROG	phrog_8300	NA	unknown function
UHGV-0140613_26	eggNOG-mapper	1294142.CINTURNW_1036	NA	NA
UHGV-0140613_26	Structural annotation	PF06896	NA	NA
UHGV-0140613_27	PHROG	phrog_8355	NA	unknown function
UHGV-0140613_27	UniRef90	UniRef90_UPI00129D77AF	Gp15 family bacteriophage protein	NA
UHGV-0140613_27	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0140613_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0140613_28	UniRef90	UniRef90_UPI0003F4F1A1	membrane protein	NA
UHGV-0140613_28	eggNOG-mapper	1391647.AVSV01000003_gene1817	phage tail tape measure protein	NA
UHGV-0140613_28	COG	COG1511	NA	NA
UHGV-0140613_29	PHROG	phrog_1194	NA	unknown function
UHGV-0140613_29	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0140613_29	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-0140613_29	Pfam	PF20458	NA	DUF6711
UHGV-0140613_29	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0140613_31	PHROG	phrog_1401	NA	unknown function
UHGV-0140613_31	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-0140613_31	eggNOG-mapper	195103.CPF_0968	NA	NA
UHGV-0140613_31	Structural annotation	PF07761	NA	NA
UHGV-0140613_32	PHROG	phrog_16267	NA	unknown function
UHGV-0140613_32	UniRef90	UniRef90_UPI0005DF2D39	phage tail protein	NA
UHGV-0140613_32	eggNOG-mapper	1499683.CCFF01000014_gene3896	Phage minor structural protein	NA
UHGV-0140613_32	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0140613_32	COG	COG4926	Phage-related protein	NA
UHGV-0140613_34	PHROG	phrog_199	holin	lysis
UHGV-0140613_34	UniRef90	UniRef90_A0A1C6DVN9	Phage-related holin (Lysis protein)	NA
UHGV-0140613_34	eggNOG-mapper	1211844.CBLM010000016_gene1474	Bacteriophage holin family	NA
UHGV-0140613_34	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0140613_34	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0140613_34	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0140613_35	KOfam	K07273	acm; lysozyme	NA
UHGV-0140613_35	PHROG	phrog_291	endolysin	lysis
UHGV-0140613_35	UniRef90	UniRef90_UPI001D166439	glycoside hydrolase family 25 protein	NA
UHGV-0140613_35	eggNOG-mapper	445973.CLOBAR_02013	Glycosyl hydrolases family 25	NA
UHGV-0140613_35	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0140613_35	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0140613_36	PHROG	phrog_20920	NA	unknown function
UHGV-0140613_36	eggNOG-mapper	1536770.R50345_22870	NA	NA
UHGV-0140613_36	Structural annotation	PF16674	NA	NA
UHGV-0140613_37	eggNOG-mapper	641107.CDLVIII_0528	NA	NA
UHGV-0140613_40	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0140613_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0140613_40	UniRef90	UniRef90_UPI000933B85D	helix-turn-helix domain-containing protein	NA
UHGV-0140613_40	eggNOG-mapper	717606.PaecuDRAFT_0701	Helix-turn-helix XRE-family like proteins	NA
UHGV-0140613_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0140613_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA